causaliq-knowledge 0.1.0__tar.gz → 0.3.0__tar.gz

{causaliq_knowledge-0.1.0/src/causaliq_knowledge.egg-info → causaliq_knowledge-0.3.0}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: causaliq-knowledge
-Version: 0.1.0
+Version: 0.3.0
 Summary: Incorporating LLM and human knowledge into causal discovery
 Author-email: CausalIQ <info@causaliq.com>
 Maintainer-email: CausalIQ <info@causaliq.com>
@@ -85,18 +85,14 @@ print(f"Reasoning: {result.reasoning}")
 
 ## Features
 
-Under development:
-
-- **Release v0.1.0 - Foundation LLM**: Simple LLM queries to 1 or 2 LLMs about edge existence and orientation to support graph averaging
-
 Currently implemented releases:
 
-- None
+- **Release v0.1.0 - Foundation LLM**: Simple LLM queries to 1 or 2 LLMs about edge existence and orientation to support graph averaging
+- **Release v0.2.0 - Additional LLMs**: Support for 7 LLM providers (Groq, Gemini, OpenAI, Anthropic, DeepSeek, Mistral, Ollama)
+- **Release v0.3.0 - LLM Caching** *(in development)*: SQLite-based response caching with CLI tools for cache management
 
 Planned:
 
-- **Release v0.2.0 - Additional LLMs**: Support for more LLM providers (OpenAI, Anthropic)
-- **Release v0.3.0 - LLM Caching**: Caching of LLM queries and responses
 - **Release v0.4.0 - LLM Context**: Variable/role/literature etc context
 - **Release v0.5.0 - Algorithm integration**: Integration into structure learning algorithms
 - **Release v0.6.0 - Legacy Reference**: Support for legacy approaches of deriving knowledge from reference networks
@@ -128,8 +124,11 @@ This approach keeps the package lightweight, reliable, and easy to debug.
 |----------|--------|--------|-----------|
 | **Groq** | `GroqClient` | llama-3.1-8b-instant | ✅ Generous |
 | **Google Gemini** | `GeminiClient` | gemini-2.5-flash | ✅ Generous |
-
-Additional providers (OpenAI, Anthropic) can be added in future releases.
+| **OpenAI** | `OpenAIClient` | gpt-4o-mini | ❌ Paid |
+| **Anthropic** | `AnthropicClient` | claude-sonnet-4-20250514 | ❌ Paid |
+| **DeepSeek** | `DeepSeekClient` | deepseek-chat | ✅ Low cost |
+| **Mistral** | `MistralClient` | mistral-small-latest | ❌ Paid |
+| **Ollama** | `OllamaClient` | llama3 | ✅ Free (local) |
 
 ## Upcoming Key Innovations
 

{causaliq_knowledge-0.1.0 → causaliq_knowledge-0.3.0}/README.md

@@ -31,18 +31,14 @@ print(f"Reasoning: {result.reasoning}")
 
 ## Features
 
-Under development:
-
-- **Release v0.1.0 - Foundation LLM**: Simple LLM queries to 1 or 2 LLMs about edge existence and orientation to support graph averaging
-
 Currently implemented releases:
 
-- None
+- **Release v0.1.0 - Foundation LLM**: Simple LLM queries to 1 or 2 LLMs about edge existence and orientation to support graph averaging
+- **Release v0.2.0 - Additional LLMs**: Support for 7 LLM providers (Groq, Gemini, OpenAI, Anthropic, DeepSeek, Mistral, Ollama)
+- **Release v0.3.0 - LLM Caching** *(in development)*: SQLite-based response caching with CLI tools for cache management
 
 Planned:
 
-- **Release v0.2.0 - Additional LLMs**: Support for more LLM providers (OpenAI, Anthropic)
-- **Release v0.3.0 - LLM Caching**: Caching of LLM queries and responses
 - **Release v0.4.0 - LLM Context**: Variable/role/literature etc context
 - **Release v0.5.0 - Algorithm integration**: Integration into structure learning algorithms
 - **Release v0.6.0 - Legacy Reference**: Support for legacy approaches of deriving knowledge from reference networks
@@ -74,8 +70,11 @@ This approach keeps the package lightweight, reliable, and easy to debug.
 |----------|--------|--------|-----------|
 | **Groq** | `GroqClient` | llama-3.1-8b-instant | ✅ Generous |
 | **Google Gemini** | `GeminiClient` | gemini-2.5-flash | ✅ Generous |
-
-Additional providers (OpenAI, Anthropic) can be added in future releases.
+| **OpenAI** | `OpenAIClient` | gpt-4o-mini | ❌ Paid |
+| **Anthropic** | `AnthropicClient` | claude-sonnet-4-20250514 | ❌ Paid |
+| **DeepSeek** | `DeepSeekClient` | deepseek-chat | ✅ Low cost |
+| **Mistral** | `MistralClient` | mistral-small-latest | ❌ Paid |
+| **Ollama** | `OllamaClient` | llama3 | ✅ Free (local) |
 
 ## Upcoming Key Innovations
 

{causaliq_knowledge-0.1.0 → causaliq_knowledge-0.3.0}/src/causaliq_knowledge/__init__.py

@@ -5,7 +5,7 @@ causaliq-knowledge: LLM and human knowledge for causal discovery.
 from causaliq_knowledge.base import KnowledgeProvider
 from causaliq_knowledge.models import EdgeDirection, EdgeKnowledge
 
-__version__ = "0.1.0"
+__version__ = "0.3.0"
 __author__ = "CausalIQ"
 __email__ = "info@causaliq.com"
 
@@ -16,8 +16,8 @@ __description__ = "LLM and human knowledge for causal discovery"
 __url__ = "https://github.com/causaliq/causaliq-knowledge"
 __license__ = "MIT"
 
-# Version tuple for programmatic access
-VERSION = tuple(map(int, __version__.split(".")))
+# Version tuple for programmatic access (major, minor, patch)
+VERSION = (0, 3, 0)
 
 __all__ = [
     "__version__",

causaliq_knowledge-0.3.0/src/causaliq_knowledge/cache/__init__.py

@@ -0,0 +1,18 @@
+"""
+Core caching infrastructure for causaliq.
+
+This module provides a generic caching system with:
+- SQLite-backed storage with concurrency support
+- Pluggable encoders for type-specific compression
+- Shared token dictionary for cross-entry compression
+- Import/export for human-readable formats
+
+Note: This module is designed for future migration to causaliq-core.
+LLM-specific caching code remains in causaliq_knowledge.llm.cache.
+"""
+
+from causaliq_knowledge.cache.token_cache import TokenCache
+
+__all__ = [
+    "TokenCache",
+]

causaliq_knowledge-0.3.0/src/causaliq_knowledge/cache/encoders/__init__.py

@@ -0,0 +1,13 @@
+"""
+Pluggable encoders for type-specific cache entry compression.
+
+Encoders transform data to/from compact binary representations,
+using a shared token dictionary for cross-entry compression.
+
+Note: This submodule is designed for future migration to causaliq-core.
+"""
+
+from causaliq_knowledge.cache.encoders.base import EntryEncoder
+from causaliq_knowledge.cache.encoders.json_encoder import JsonEncoder
+
+__all__ = ["EntryEncoder", "JsonEncoder"]

causaliq_knowledge-0.3.0/src/causaliq_knowledge/cache/encoders/base.py

@@ -0,0 +1,90 @@
+"""
+Abstract base class for cache entry encoders.
+
+Encoders transform data to/from compact binary representations,
+optionally using a shared token dictionary for compression.
+"""
+
+from __future__ import annotations
+
+from abc import ABC, abstractmethod
+from pathlib import Path
+from typing import TYPE_CHECKING, Any
+
+if TYPE_CHECKING:  # pragma: no cover
+    from causaliq_knowledge.cache.token_cache import TokenCache
+
+
+class EntryEncoder(ABC):
+    """Abstract base class for type-specific cache entry encoders.
+
+    Encoders handle:
+    - Encoding data to compact binary format for storage
+    - Decoding binary data back to original structure
+    - Exporting to human-readable formats (JSON, GraphML, etc.)
+    - Importing from human-readable formats
+
+    Encoders may use the shared token dictionary in TokenCache
+    for cross-entry compression of repeated strings.
+
+    Example:
+        >>> class MyEncoder(EntryEncoder):
+        ...     def encode(self, data, token_cache):
+        ...         return json.dumps(data).encode()
+        ...     def decode(self, blob, token_cache):
+        ...         return json.loads(blob.decode())
+        ...     # ... export/import methods
+    """
+
+    @property
+    def default_export_format(self) -> str:
+        """Default file extension for exports (e.g. 'json', 'graphml')."""
+        return "json"
+
+    @abstractmethod
+    def encode(self, data: Any, token_cache: TokenCache) -> bytes:
+        """Encode data to binary format.
+
+        Args:
+            data: The data to encode (type depends on encoder).
+            token_cache: Cache instance for shared token dictionary.
+
+        Returns:
+            Compact binary representation.
+        """
+        ...
+
+    @abstractmethod
+    def decode(self, blob: bytes, token_cache: TokenCache) -> Any:
+        """Decode binary data back to original structure.
+
+        Args:
+            blob: Binary data from cache.
+            token_cache: Cache instance for shared token dictionary.
+
+        Returns:
+            Decoded data in original format.
+        """
+        ...
+
+    @abstractmethod
+    def export(self, data: Any, path: Path) -> None:
+        """Export data to human-readable file format.
+
+        Args:
+            data: The data to export (decoded format).
+            path: Destination file path.
+        """
+        ...
+
+    @abstractmethod
+    def import_(self, path: Path) -> Any:
+        """Import data from human-readable file format.
+
+        Args:
+            path: Source file path.
+
+        Returns:
+            Imported data ready for encoding.
+        """
+        ...

causaliq_knowledge-0.3.0/src/causaliq_knowledge/cache/encoders/json_encoder.py

@@ -0,0 +1,418 @@
+"""
+Generic JSON encoder with tokenisation and literal handling.
+
+Tokenises JSON structure (keys, structural chars, string values) while
+storing numbers as compact binary literals. Achieves 50-70% compression
+on typical JSON data.
+
+Note: This module is designed for future migration to causaliq-core.
+"""
+
+from __future__ import annotations
+
+import json
+import re
+import struct
+from pathlib import Path
+from typing import TYPE_CHECKING, Any
+
+from causaliq_knowledge.cache.encoders.base import EntryEncoder
+
+if TYPE_CHECKING:  # pragma: no cover
+    from causaliq_knowledge.cache.token_cache import TokenCache
+
+
+# Type markers for encoded values
+TOKEN_REF = 0x00
+LITERAL_INT = 0x01
+LITERAL_FLOAT = 0x02
+
+
+class JsonEncoder(EntryEncoder):
+    """Tokenised encoding for JSON-serialisable data.
+
+    Uses shared token dictionary for JSON structure and text content.
+    Numbers are stored as binary literals. Typical compression is 50-70%.
+
+    Encoding format:
+        - Token reference: 0x00 + uint16 (token ID)
+        - Integer literal: 0x01 + int64 (8 bytes, signed)
+        - Float literal: 0x02 + float64 (8 bytes, double)
+
+    Example:
+        >>> from causaliq_knowledge.cache import TokenCache
+        >>> with TokenCache(":memory:") as cache:
+        ...     encoder = JsonEncoder()
+        ...     data = {"key": "value", "count": 42}
+        ...     blob = encoder.encode(data, cache)
+        ...     decoded = encoder.decode(blob, cache)
+        ...     assert decoded == data
+    """
+
+    def _get_token(self, token_id: int, token_cache: TokenCache) -> str:
+        """Get token by ID, raising error if not found.
+
+        Args:
+            token_id: The token ID to look up.
+            token_cache: Cache instance for token dictionary.
+
+        Returns:
+            The token string.
+
+        Raises:
+            ValueError: If token ID not found (corrupted cache).
+        """
+        token = token_cache.get_token(token_id)
+        if token is None:
+            raise ValueError(f"Unknown token ID: {token_id}")
+        return token
+
+    @property
+    def default_export_format(self) -> str:
+        """Default file extension for exports."""
+        return "json"
+
+    def encode(self, data: Any, token_cache: TokenCache) -> bytes:
+        """Encode JSON-serialisable data to tokenised binary format.
+
+        Args:
+            data: Any JSON-serialisable data (dict, list, str, int, etc.).
+            token_cache: Cache instance for shared token dictionary.
+
+        Returns:
+            Compact binary representation using token IDs and literals.
+        """
+        result = bytearray()
+        self._encode_value(data, token_cache, result)
+        return bytes(result)
+
+    def decode(self, blob: bytes, token_cache: TokenCache) -> Any:
+        """Decode tokenised binary data back to JSON structure.
+
+        Args:
+            blob: Binary data from cache.
+            token_cache: Cache instance for shared token dictionary.
+
+        Returns:
+            Decoded JSON-compatible data structure.
+        """
+        offset = 0
+        value, _ = self._decode_value(blob, offset, token_cache)
+        return value
+
+    def export(self, data: Any, path: Path) -> None:
+        """Export data to JSON file.
+
+        Args:
+            data: The decoded data to export.
+            path: Destination file path.
+        """
+        path.write_text(json.dumps(data, indent=2))
+
+    def import_(self, path: Path) -> Any:
+        """Import data from JSON file.
+
+        Args:
+            path: Source file path.
+
+        Returns:
+            Imported JSON data ready for encoding.
+        """
+        return json.loads(path.read_text())
+
+    def _encode_value(
+        self, value: Any, token_cache: TokenCache, result: bytearray
+    ) -> None:
+        """Recursively encode a JSON value.
+
+        Args:
+            value: Value to encode.
+            token_cache: Cache for token dictionary.
+            result: Bytearray to append encoded data to.
+        """
+        if value is None:
+            self._encode_token("null", token_cache, result)
+        elif isinstance(value, bool):
+            # Must check bool before int (bool is subclass of int)
+            self._encode_token(
+                "true" if value else "false", token_cache, result
+            )
+        elif isinstance(value, int):
+            result.append(LITERAL_INT)
+            result.extend(struct.pack("<q", value))
+        elif isinstance(value, float):
+            result.append(LITERAL_FLOAT)
+            result.extend(struct.pack("<d", value))
+        elif isinstance(value, str):
+            self._encode_string(value, token_cache, result)
+        elif isinstance(value, list):
+            self._encode_list(value, token_cache, result)
+        elif isinstance(value, dict):
+            self._encode_dict(value, token_cache, result)
+        else:
+            # Fallback: convert to string
+            self._encode_string(str(value), token_cache, result)
+
+    def _encode_token(
+        self, token: str, token_cache: TokenCache, result: bytearray
+    ) -> None:
+        """Encode a single token reference.
+
+        Args:
+            token: Token string to encode.
+            token_cache: Cache for token dictionary.
+            result: Bytearray to append encoded data to.
+        """
+        token_id = token_cache.get_or_create_token(token)
+        result.append(TOKEN_REF)
+        result.extend(struct.pack("<H", token_id))
+
+    def _encode_string(
+        self, value: str, token_cache: TokenCache, result: bytearray
+    ) -> None:
+        """Encode a string value with tokenisation.
+
+        Strings are split into tokens (words/punctuation) with special
+        markers for string start/end.
+
+        Args:
+            value: String to encode.
+            token_cache: Cache for token dictionary.
+            result: Bytearray to append encoded data to.
+        """
+        self._encode_token('"', token_cache, result)
+        # Split on whitespace and punctuation, keeping delimiters
+        tokens = self._tokenise_string(value)
+        for token in tokens:
+            self._encode_token(token, token_cache, result)
+        self._encode_token('"', token_cache, result)
+
+    def _encode_list(
+        self, value: list, token_cache: TokenCache, result: bytearray
+    ) -> None:
+        """Encode a list value.
+
+        Args:
+            value: List to encode.
+            token_cache: Cache for token dictionary.
+            result: Bytearray to append encoded data to.
+        """
+        self._encode_token("[", token_cache, result)
+        for i, item in enumerate(value):
+            if i > 0:
+                self._encode_token(",", token_cache, result)
+            self._encode_value(item, token_cache, result)
+        self._encode_token("]", token_cache, result)
+
+    def _encode_dict(
+        self, value: dict, token_cache: TokenCache, result: bytearray
+    ) -> None:
+        """Encode a dict value.
+
+        Args:
+            value: Dict to encode.
+            token_cache: Cache for token dictionary.
+            result: Bytearray to append encoded data to.
+        """
+        self._encode_token("{", token_cache, result)
+        for i, (key, val) in enumerate(value.items()):
+            if i > 0:
+                self._encode_token(",", token_cache, result)
+            self._encode_string(str(key), token_cache, result)
+            self._encode_token(":", token_cache, result)
+            self._encode_value(val, token_cache, result)
+        self._encode_token("}", token_cache, result)
+
+    def _tokenise_string(self, value: str) -> list[str]:
+        """Split string into tokens for encoding.
+
+        Splits on whitespace and punctuation boundaries, preserving
+        all characters. Empty string returns empty list.
+
+        Args:
+            value: String to tokenise.
+
+        Returns:
+            List of token strings.
+        """
+        if not value:
+            return []
+        # Split on word boundaries, keeping all parts
+        # Matches: word chars, whitespace runs, or single punctuation
+        tokens = re.findall(r"\w+|\s+|[^\w\s]", value)
+        return tokens
+
+    def _decode_value(
+        self, blob: bytes, offset: int, token_cache: TokenCache
+    ) -> tuple[Any, int]:
+        """Decode a single value from blob at offset.
+
+        Args:
+            blob: Binary data to decode.
+            offset: Current position in blob.
+            token_cache: Cache for token dictionary.
+
+        Returns:
+            Tuple of (decoded value, new offset).
+        """
+        if offset >= len(blob):
+            raise ValueError("Unexpected end of data")
+
+        type_marker = blob[offset]
+        offset += 1
+
+        if type_marker == LITERAL_INT:
+            value = struct.unpack("<q", blob[offset : offset + 8])[0]
+            return value, offset + 8
+        elif type_marker == LITERAL_FLOAT:
+            value = struct.unpack("<d", blob[offset : offset + 8])[0]
+            return value, offset + 8
+        elif type_marker == TOKEN_REF:
+            token_id = struct.unpack("<H", blob[offset : offset + 2])[0]
+            offset += 2
+            token = self._get_token(token_id, token_cache)
+
+            if token == "null":
+                return None, offset
+            elif token == "true":
+                return True, offset
+            elif token == "false":
+                return False, offset
+            elif token == '"':
+                return self._decode_string(blob, offset, token_cache)
+            elif token == "[":
+                return self._decode_list(blob, offset, token_cache)
+            elif token == "{":
+                return self._decode_dict(blob, offset, token_cache)
+            else:
+                raise ValueError(
+                    f"Unexpected token at value position: {token}"
+                )
+        else:
+            raise ValueError(f"Unknown type marker: {type_marker}")
+
+    def _decode_string(
+        self, blob: bytes, offset: int, token_cache: TokenCache
+    ) -> tuple[str, int]:
+        """Decode a string value (after opening quote consumed).
+
+        Args:
+            blob: Binary data to decode.
+            offset: Current position (after opening quote).
+            token_cache: Cache for token dictionary.
+
+        Returns:
+            Tuple of (decoded string, new offset).
+        """
+        parts: list[str] = []
+        while offset < len(blob):
+            type_marker = blob[offset]
+            if type_marker != TOKEN_REF:
+                raise ValueError(
+                    f"Expected token in string, got {type_marker}"
+                )
+            token_id = struct.unpack("<H", blob[offset + 1 : offset + 3])[0]
+            offset += 3
+            token = self._get_token(token_id, token_cache)
+            if token == '"':
+                # End of string
+                return "".join(parts), offset
+            parts.append(token)
+        raise ValueError("Unterminated string")
+
+    def _decode_list(
+        self, blob: bytes, offset: int, token_cache: TokenCache
+    ) -> tuple[list, int]:
+        """Decode a list value (after opening bracket consumed).
+
+        Args:
+            blob: Binary data to decode.
+            offset: Current position (after opening bracket).
+            token_cache: Cache for token dictionary.
+
+        Returns:
+            Tuple of (decoded list, new offset).
+        """
+        items = []
+        # Check for empty list
+        if offset < len(blob) and blob[offset] == TOKEN_REF:
+            token_id = struct.unpack("<H", blob[offset + 1 : offset + 3])[0]
+            token = self._get_token(token_id, token_cache)
+            if token == "]":
+                return [], offset + 3
+
+        while offset < len(blob):
+            value, offset = self._decode_value(blob, offset, token_cache)
+            items.append(value)
+
+            # Check for comma or closing bracket
+            if offset >= len(blob):
+                raise ValueError("Unterminated list")
+            if blob[offset] != TOKEN_REF:
+                raise ValueError("Expected token after list item")
+            token_id = struct.unpack("<H", blob[offset + 1 : offset + 3])[0]
+            offset += 3
+            token = self._get_token(token_id, token_cache)
+            if token == "]":
+                return items, offset
+            elif token != ",":
+                raise ValueError(f"Expected ',' or ']' in list, got '{token}'")
+
+        raise ValueError("Unterminated list")  # pragma: no cover
+
+    def _decode_dict(
+        self, blob: bytes, offset: int, token_cache: TokenCache
+    ) -> tuple[dict, int]:
+        """Decode a dict value (after opening brace consumed).
+
+        Args:
+            blob: Binary data to decode.
+            offset: Current position (after opening brace).
+            token_cache: Cache for token dictionary.
+
+        Returns:
+            Tuple of (decoded dict, new offset).
+        """
+        result = {}
+        # Check for empty dict
+        if offset < len(blob) and blob[offset] == TOKEN_REF:
+            token_id = struct.unpack("<H", blob[offset + 1 : offset + 3])[0]
+            token = self._get_token(token_id, token_cache)
+            if token == "}":
+                return {}, offset + 3
+
+        while offset < len(blob):
+            # Decode key (must be string)
+            key, offset = self._decode_value(blob, offset, token_cache)
+            if not isinstance(key, str):
+                raise ValueError(f"Dict key must be string, got {type(key)}")
+
+            # Expect colon
+            if offset >= len(blob) or blob[offset] != TOKEN_REF:
+                raise ValueError("Expected ':' after dict key")
+            token_id = struct.unpack("<H", blob[offset + 1 : offset + 3])[0]
+            offset += 3
+            token = self._get_token(token_id, token_cache)
+            if token != ":":
+                raise ValueError(f"Expected ':', got '{token}'")
+
+            # Decode value
+            value, offset = self._decode_value(blob, offset, token_cache)
+            result[key] = value
+
+            # Check for comma or closing brace
+            if offset >= len(blob):
+                raise ValueError("Unterminated dict")
+            if blob[offset] != TOKEN_REF:
+                raise ValueError("Expected token after dict value")
+            token_id = struct.unpack("<H", blob[offset + 1 : offset + 3])[0]
+            offset += 3
+            token = self._get_token(token_id, token_cache)
+            if token == "}":
+                return result, offset
+            elif token != ",":
+                raise ValueError(
+                    f"Expected ',' or '}}' in dict, got '{token}'"
+                )
+
+        raise ValueError("Unterminated dict")  # pragma: no cover