careamics 0.1.0rc6__tar.gz → 0.1.0rc8__tar.gz

careamics-0.1.0rc8/.github/TEST_FAIL_TEMPLATE.md

@@ -0,0 +1,12 @@
+---
+title: "{{ env.TITLE }}"
+labels: [bug]
+---
+The {{ workflow }} workflow failed on {{ date | date("YYYY-MM-DD HH:mm") }} UTC
+
+The most recent failing test was on {{ env.PLATFORM }} py{{ env.PYTHON }}
+with commit: {{ sha }}
+
+Full run: https://github.com/{{ repo }}/actions/runs/{{ env.RUN_ID }}
+
+(This post will be updated if another test fails, as long as this issue remains open.)

{careamics-0.1.0rc6 → careamics-0.1.0rc8}/.github/workflows/ci.yml

@@ -27,7 +27,7 @@ jobs:
     strategy:
       fail-fast: false
       matrix:
-        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
+        python-version: ["3.9", "3.10", "3.11", "3.12"]
         # https://docs.github.com/en/actions/using-github-hosted-runners/about-github-hosted-runners/about-github-hosted-runners#standard-github-hosted-runners-for-public-repositories
         platform: [ubuntu-latest, macos-13, windows-latest]
 

{careamics-0.1.0rc6 → careamics-0.1.0rc8}/.gitignore

@@ -6,3 +6,4 @@
 .coverage
 coverage.xml
 lightning_logs
+.mypy_cache

{careamics-0.1.0rc6 → careamics-0.1.0rc8}/.pre-commit-config.yaml

@@ -14,9 +14,10 @@ repos:
       - id: validate-pyproject
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.4.7
+    rev: v0.5.0
     hooks:
       - id: ruff
+        exclude: "^src/careamics/lvae_training/.*|^src/careamics/models/lvae/.*"
         args: [--fix, --target-version, py38]
 
   - repo: https://github.com/psf/black
@@ -25,10 +26,11 @@ repos:
       - id: black
 
   - repo: https://github.com/pre-commit/mirrors-mypy
-    rev: v1.10.0
+    rev: v1.10.1
     hooks:
       - id: mypy
         files: "^src/"
+        exclude: "^src/careamics/lvae_training/.*|^src/careamics/models/lvae/.*"
         additional_dependencies:
           - numpy
           - types-PyYAML
@@ -39,6 +41,7 @@ repos:
     rev: v1.7.0
     hooks:
       - id: numpydoc-validation
+        exclude: "^src/careamics/lvae_training/.*|^src/careamics/models/lvae/.*"      
 
   # # jupyter linting and formatting
   # - repo: https://github.com/nbQA-dev/nbQA

{careamics-0.1.0rc6 → careamics-0.1.0rc8}/PKG-INFO

@@ -1,31 +1,32 @@
 Metadata-Version: 2.3
 Name: careamics
-Version: 0.1.0rc6
+Version: 0.1.0rc8
 Summary: Toolbox for running N2V and friends.
 Project-URL: homepage, https://careamics.github.io/
 Project-URL: repository, https://github.com/CAREamics/careamics
-Author-email: Igor Zubarev <igor.zubarev@fht.org>, Joran Deschamps <joran.deschamps@fht.org>
+Author-email: Melisande Croft <melisande.croft@fht.org>, Joran Deschamps <joran.deschamps@fht.org>, Igor Zubarev <igor.zubarev@fht.org>
 License: BSD-3-Clause
 License-File: LICENSE
 Classifier: Development Status :: 3 - Alpha
 Classifier: License :: OSI Approved :: BSD License
 Classifier: Programming Language :: Python :: 3
-Classifier: Programming Language :: Python :: 3.8
 Classifier: Programming Language :: Python :: 3.9
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
 Classifier: Typing :: Typed
-Requires-Python: >=3.8
+Requires-Python: >=3.9
 Requires-Dist: bioimageio-core>=0.6.0
+Requires-Dist: numpy<2.0.0
 Requires-Dist: psutil
 Requires-Dist: pydantic>=2.5
 Requires-Dist: pytorch-lightning>=2.2.0
 Requires-Dist: pyyaml
-Requires-Dist: scikit-image
+Requires-Dist: scikit-image<=0.23.2
 Requires-Dist: tifffile
 Requires-Dist: torch>=2.0.0
-Requires-Dist: zarr
+Requires-Dist: torchvision
+Requires-Dist: zarr<3.0.0
 Provides-Extra: dev
 Requires-Dist: pre-commit; extra == 'dev'
 Requires-Dist: pytest; extra == 'dev'