careamics 0.0.7__tar.gz → 0.0.8__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.


This version of careamics might be problematic. Click here for more details.

Files changed (286) hide show
  1. {careamics-0.0.7 → careamics-0.0.8}/PKG-INFO +1 -1
  2. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lvae_training/eval_utils.py +7 -2
  3. {careamics-0.0.7 → careamics-0.0.8}/.github/ISSUE_TEMPLATE/bug_report.md +0 -0
  4. {careamics-0.0.7 → careamics-0.0.8}/.github/ISSUE_TEMPLATE/example_report.md +0 -0
  5. {careamics-0.0.7 → careamics-0.0.8}/.github/ISSUE_TEMPLATE/feature_request.md +0 -0
  6. {careamics-0.0.7 → careamics-0.0.8}/.github/ISSUE_TEMPLATE/interoperability_request.md +0 -0
  7. {careamics-0.0.7 → careamics-0.0.8}/.github/ISSUE_TEMPLATE/question.md +0 -0
  8. {careamics-0.0.7 → careamics-0.0.8}/.github/ISSUE_TEMPLATE/refactoring_suggestion.md +0 -0
  9. {careamics-0.0.7 → careamics-0.0.8}/.github/TEST_FAIL_TEMPLATE.md +0 -0
  10. {careamics-0.0.7 → careamics-0.0.8}/.github/dependabot.yml +0 -0
  11. {careamics-0.0.7 → careamics-0.0.8}/.github/pull_request_template.md +0 -0
  12. {careamics-0.0.7 → careamics-0.0.8}/.github/workflows/ci.yml +0 -0
  13. {careamics-0.0.7 → careamics-0.0.8}/.github/workflows/codecov.yml +0 -0
  14. {careamics-0.0.7 → careamics-0.0.8}/.github/workflows/lvae.yml +0 -0
  15. {careamics-0.0.7 → careamics-0.0.8}/.gitignore +0 -0
  16. {careamics-0.0.7 → careamics-0.0.8}/.pre-commit-config.yaml +0 -0
  17. {careamics-0.0.7 → careamics-0.0.8}/CODE_OF_CONDUCT.md +0 -0
  18. {careamics-0.0.7 → careamics-0.0.8}/LICENSE +0 -0
  19. {careamics-0.0.7 → careamics-0.0.8}/README.md +0 -0
  20. {careamics-0.0.7 → careamics-0.0.8}/codecov.yml +0 -0
  21. {careamics-0.0.7 → careamics-0.0.8}/mypy.ini +0 -0
  22. {careamics-0.0.7 → careamics-0.0.8}/pyproject.toml +0 -0
  23. {careamics-0.0.7 → careamics-0.0.8}/scripts/export_bmz_readme.py +0 -0
  24. {careamics-0.0.7 → careamics-0.0.8}/scripts/export_covers.py +0 -0
  25. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/__init__.py +0 -0
  26. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/careamist.py +0 -0
  27. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/cli/__init__.py +0 -0
  28. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/cli/conf.py +0 -0
  29. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/cli/main.py +0 -0
  30. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/cli/utils.py +0 -0
  31. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/__init__.py +0 -0
  32. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/algorithms/__init__.py +0 -0
  33. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/algorithms/care_algorithm_model.py +0 -0
  34. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/algorithms/n2n_algorithm_model.py +0 -0
  35. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/algorithms/n2v_algorithm_model.py +0 -0
  36. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/algorithms/unet_algorithm_model.py +0 -0
  37. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/algorithms/vae_algorithm_model.py +0 -0
  38. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/architectures/__init__.py +0 -0
  39. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/architectures/architecture_model.py +0 -0
  40. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/architectures/lvae_model.py +0 -0
  41. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/architectures/unet_model.py +0 -0
  42. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/callback_model.py +0 -0
  43. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/care_configuration.py +0 -0
  44. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/configuration.py +0 -0
  45. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/configuration_factories.py +0 -0
  46. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/configuration_io.py +0 -0
  47. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/data/__init__.py +0 -0
  48. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/data/data_model.py +0 -0
  49. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/data/n2v_data_model.py +0 -0
  50. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/inference_model.py +0 -0
  51. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/likelihood_model.py +0 -0
  52. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/loss_model.py +0 -0
  53. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/n2n_configuration.py +0 -0
  54. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/n2v_configuration.py +0 -0
  55. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/nm_model.py +0 -0
  56. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/optimizer_models.py +0 -0
  57. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/support/__init__.py +0 -0
  58. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/support/supported_activations.py +0 -0
  59. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/support/supported_algorithms.py +0 -0
  60. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/support/supported_architectures.py +0 -0
  61. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/support/supported_data.py +0 -0
  62. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/support/supported_loggers.py +0 -0
  63. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/support/supported_losses.py +0 -0
  64. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/support/supported_optimizers.py +0 -0
  65. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/support/supported_pixel_manipulations.py +0 -0
  66. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/support/supported_struct_axis.py +0 -0
  67. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/support/supported_transforms.py +0 -0
  68. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/tile_information.py +0 -0
  69. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/training_model.py +0 -0
  70. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/transformations/__init__.py +0 -0
  71. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/transformations/n2v_manipulate_model.py +0 -0
  72. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/transformations/normalize_model.py +0 -0
  73. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/transformations/transform_model.py +0 -0
  74. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/transformations/transform_unions.py +0 -0
  75. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/transformations/xy_flip_model.py +0 -0
  76. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/transformations/xy_random_rotate90_model.py +0 -0
  77. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/validators/__init__.py +0 -0
  78. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/validators/model_validators.py +0 -0
  79. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/config/validators/validator_utils.py +0 -0
  80. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/conftest.py +0 -0
  81. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/dataset/__init__.py +0 -0
  82. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/dataset/dataset_utils/__init__.py +0 -0
  83. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/dataset/dataset_utils/dataset_utils.py +0 -0
  84. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/dataset/dataset_utils/file_utils.py +0 -0
  85. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/dataset/dataset_utils/iterate_over_files.py +0 -0
  86. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/dataset/dataset_utils/running_stats.py +0 -0
  87. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/dataset/in_memory_dataset.py +0 -0
  88. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/dataset/in_memory_pred_dataset.py +0 -0
  89. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/dataset/in_memory_tiled_pred_dataset.py +0 -0
  90. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/dataset/iterable_dataset.py +0 -0
  91. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/dataset/iterable_pred_dataset.py +0 -0
  92. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/dataset/iterable_tiled_pred_dataset.py +0 -0
  93. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/dataset/patching/__init__.py +0 -0
  94. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/dataset/patching/patching.py +0 -0
  95. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/dataset/patching/random_patching.py +0 -0
  96. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/dataset/patching/sequential_patching.py +0 -0
  97. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/dataset/patching/validate_patch_dimension.py +0 -0
  98. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/dataset/tiling/__init__.py +0 -0
  99. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/dataset/tiling/collate_tiles.py +0 -0
  100. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/dataset/tiling/lvae_tiled_patching.py +0 -0
  101. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/dataset/tiling/tiled_patching.py +0 -0
  102. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/dataset/zarr_dataset.py +0 -0
  103. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/file_io/__init__.py +0 -0
  104. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/file_io/read/__init__.py +0 -0
  105. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/file_io/read/get_func.py +0 -0
  106. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/file_io/read/tiff.py +0 -0
  107. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/file_io/read/zarr.py +0 -0
  108. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/file_io/write/__init__.py +0 -0
  109. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/file_io/write/get_func.py +0 -0
  110. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/file_io/write/tiff.py +0 -0
  111. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lightning/__init__.py +0 -0
  112. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lightning/callbacks/__init__.py +0 -0
  113. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lightning/callbacks/hyperparameters_callback.py +0 -0
  114. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lightning/callbacks/prediction_writer_callback/__init__.py +0 -0
  115. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lightning/callbacks/prediction_writer_callback/file_path_utils.py +0 -0
  116. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lightning/callbacks/prediction_writer_callback/prediction_writer_callback.py +0 -0
  117. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lightning/callbacks/prediction_writer_callback/write_strategy.py +0 -0
  118. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lightning/callbacks/prediction_writer_callback/write_strategy_factory.py +0 -0
  119. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lightning/callbacks/progress_bar_callback.py +0 -0
  120. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lightning/lightning_module.py +0 -0
  121. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lightning/predict_data_module.py +0 -0
  122. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lightning/train_data_module.py +0 -0
  123. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/losses/__init__.py +0 -0
  124. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/losses/fcn/__init__.py +0 -0
  125. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/losses/fcn/losses.py +0 -0
  126. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/losses/loss_factory.py +0 -0
  127. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/losses/lvae/__init__.py +0 -0
  128. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/losses/lvae/loss_utils.py +0 -0
  129. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/losses/lvae/losses.py +0 -0
  130. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lvae_training/__init__.py +0 -0
  131. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lvae_training/calibration.py +0 -0
  132. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lvae_training/dataset/__init__.py +0 -0
  133. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lvae_training/dataset/config.py +0 -0
  134. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lvae_training/dataset/lc_dataset.py +0 -0
  135. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lvae_training/dataset/multich_dataset.py +0 -0
  136. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lvae_training/dataset/multifile_dataset.py +0 -0
  137. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lvae_training/dataset/types.py +0 -0
  138. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lvae_training/dataset/utils/__init__.py +0 -0
  139. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lvae_training/dataset/utils/data_utils.py +0 -0
  140. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lvae_training/dataset/utils/empty_patch_fetcher.py +0 -0
  141. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lvae_training/dataset/utils/index_manager.py +0 -0
  142. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lvae_training/dataset/utils/index_switcher.py +0 -0
  143. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lvae_training/get_config.py +0 -0
  144. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lvae_training/lightning_module.py +0 -0
  145. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lvae_training/metrics.py +0 -0
  146. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lvae_training/train_lvae.py +0 -0
  147. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/lvae_training/train_utils.py +0 -0
  148. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/model_io/__init__.py +0 -0
  149. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/model_io/bioimage/__init__.py +0 -0
  150. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/model_io/bioimage/_readme_factory.py +0 -0
  151. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/model_io/bioimage/bioimage_utils.py +0 -0
  152. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/model_io/bioimage/cover_factory.py +0 -0
  153. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/model_io/bioimage/model_description.py +0 -0
  154. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/model_io/bmz_io.py +0 -0
  155. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/model_io/model_io_utils.py +0 -0
  156. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/models/__init__.py +0 -0
  157. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/models/activation.py +0 -0
  158. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/models/layers.py +0 -0
  159. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/models/lvae/__init__.py +0 -0
  160. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/models/lvae/layers.py +0 -0
  161. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/models/lvae/likelihoods.py +0 -0
  162. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/models/lvae/lvae.py +0 -0
  163. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/models/lvae/noise_models.py +0 -0
  164. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/models/lvae/stochastic.py +0 -0
  165. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/models/lvae/utils.py +0 -0
  166. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/models/model_factory.py +0 -0
  167. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/models/unet.py +0 -0
  168. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/prediction_utils/__init__.py +0 -0
  169. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/prediction_utils/lvae_prediction.py +0 -0
  170. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/prediction_utils/lvae_tiling_manager.py +0 -0
  171. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/prediction_utils/prediction_outputs.py +0 -0
  172. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/prediction_utils/stitch_prediction.py +0 -0
  173. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/py.typed +0 -0
  174. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/transforms/__init__.py +0 -0
  175. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/transforms/compose.py +0 -0
  176. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/transforms/n2v_manipulate.py +0 -0
  177. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/transforms/normalize.py +0 -0
  178. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/transforms/pixel_manipulation.py +0 -0
  179. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/transforms/struct_mask_parameters.py +0 -0
  180. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/transforms/transform.py +0 -0
  181. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/transforms/tta.py +0 -0
  182. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/transforms/xy_flip.py +0 -0
  183. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/transforms/xy_random_rotate90.py +0 -0
  184. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/utils/__init__.py +0 -0
  185. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/utils/autocorrelation.py +0 -0
  186. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/utils/base_enum.py +0 -0
  187. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/utils/context.py +0 -0
  188. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/utils/lightning_utils.py +0 -0
  189. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/utils/logging.py +0 -0
  190. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/utils/metrics.py +0 -0
  191. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/utils/path_utils.py +0 -0
  192. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/utils/plotting.py +0 -0
  193. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/utils/ram.py +0 -0
  194. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/utils/receptive_field.py +0 -0
  195. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/utils/serializers.py +0 -0
  196. {careamics-0.0.7 → careamics-0.0.8}/src/careamics/utils/torch_utils.py +0 -0
  197. {careamics-0.0.7 → careamics-0.0.8}/tests/cli/__init__.py +0 -0
  198. {careamics-0.0.7 → careamics-0.0.8}/tests/cli/test_conf.py +0 -0
  199. {careamics-0.0.7 → careamics-0.0.8}/tests/cli/test_main.py +0 -0
  200. {careamics-0.0.7 → careamics-0.0.8}/tests/config/algorithms/test_care_algorithm_model.py +0 -0
  201. {careamics-0.0.7 → careamics-0.0.8}/tests/config/algorithms/test_n2n_algorithm_model.py +0 -0
  202. {careamics-0.0.7 → careamics-0.0.8}/tests/config/algorithms/test_n2v_algorithm_model.py +0 -0
  203. {careamics-0.0.7 → careamics-0.0.8}/tests/config/architectures/test_architecture_model.py +0 -0
  204. {careamics-0.0.7 → careamics-0.0.8}/tests/config/architectures/test_lvae_model.py +0 -0
  205. {careamics-0.0.7 → careamics-0.0.8}/tests/config/architectures/test_unet_model.py +0 -0
  206. {careamics-0.0.7 → careamics-0.0.8}/tests/config/data/test_data_model.py +0 -0
  207. {careamics-0.0.7 → careamics-0.0.8}/tests/config/data/test_n2v_data_model.py +0 -0
  208. {careamics-0.0.7 → careamics-0.0.8}/tests/config/support/test_supported_data.py +0 -0
  209. {careamics-0.0.7 → careamics-0.0.8}/tests/config/support/test_supported_optimizers.py +0 -0
  210. {careamics-0.0.7 → careamics-0.0.8}/tests/config/test_callback_models.py +0 -0
  211. {careamics-0.0.7 → careamics-0.0.8}/tests/config/test_configuration.py +0 -0
  212. {careamics-0.0.7 → careamics-0.0.8}/tests/config/test_configuration_factories.py +0 -0
  213. {careamics-0.0.7 → careamics-0.0.8}/tests/config/test_configuration_io.py +0 -0
  214. {careamics-0.0.7 → careamics-0.0.8}/tests/config/test_inference_model.py +0 -0
  215. {careamics-0.0.7 → careamics-0.0.8}/tests/config/test_n2v_configuration.py +0 -0
  216. {careamics-0.0.7 → careamics-0.0.8}/tests/config/test_optimizers_model.py +0 -0
  217. {careamics-0.0.7 → careamics-0.0.8}/tests/config/test_tile_information.py +0 -0
  218. {careamics-0.0.7 → careamics-0.0.8}/tests/config/test_training_model.py +0 -0
  219. {careamics-0.0.7 → careamics-0.0.8}/tests/config/test_unet_algorithm_model.py +0 -0
  220. {careamics-0.0.7 → careamics-0.0.8}/tests/config/test_vae_algorithm_model.py +0 -0
  221. {careamics-0.0.7 → careamics-0.0.8}/tests/config/transformations/test_n2v_manipulate_model.py +0 -0
  222. {careamics-0.0.7 → careamics-0.0.8}/tests/config/transformations/test_normalize_model.py +0 -0
  223. {careamics-0.0.7 → careamics-0.0.8}/tests/config/transformations/test_xy_flip_model.py +0 -0
  224. {careamics-0.0.7 → careamics-0.0.8}/tests/config/transformations/test_xy_random_rotate90_model.py +0 -0
  225. {careamics-0.0.7 → careamics-0.0.8}/tests/config/validators/test_model_validators.py +0 -0
  226. {careamics-0.0.7 → careamics-0.0.8}/tests/config/validators/test_validator_utils.py +0 -0
  227. {careamics-0.0.7 → careamics-0.0.8}/tests/conftest.py +0 -0
  228. {careamics-0.0.7 → careamics-0.0.8}/tests/dataset/dataset_utils/test_compute_normalization_stats.py +0 -0
  229. {careamics-0.0.7 → careamics-0.0.8}/tests/dataset/dataset_utils/test_list_files.py +0 -0
  230. {careamics-0.0.7 → careamics-0.0.8}/tests/dataset/patching/test_patching_utils.py +0 -0
  231. {careamics-0.0.7 → careamics-0.0.8}/tests/dataset/patching/test_random_patching.py +0 -0
  232. {careamics-0.0.7 → careamics-0.0.8}/tests/dataset/patching/test_sequential_patching.py +0 -0
  233. {careamics-0.0.7 → careamics-0.0.8}/tests/dataset/test_in_memory_dataset.py +0 -0
  234. {careamics-0.0.7 → careamics-0.0.8}/tests/dataset/test_in_memory_pred_dataset.py +0 -0
  235. {careamics-0.0.7 → careamics-0.0.8}/tests/dataset/test_in_memory_tiled_pred_dataset.py +0 -0
  236. {careamics-0.0.7 → careamics-0.0.8}/tests/dataset/test_iterable_dataset.py +0 -0
  237. {careamics-0.0.7 → careamics-0.0.8}/tests/dataset/test_iterable_pred_dataset.py +0 -0
  238. {careamics-0.0.7 → careamics-0.0.8}/tests/dataset/test_iterable_tiled_pred_dataset.py +0 -0
  239. {careamics-0.0.7 → careamics-0.0.8}/tests/dataset/tiling/test_collate_tiles.py +0 -0
  240. {careamics-0.0.7 → careamics-0.0.8}/tests/dataset/tiling/test_lvae_tiled_patching.py +0 -0
  241. {careamics-0.0.7 → careamics-0.0.8}/tests/dataset/tiling/test_tiled_patching.py +0 -0
  242. {careamics-0.0.7 → careamics-0.0.8}/tests/file_io/read/test_get_read_func.py +0 -0
  243. {careamics-0.0.7 → careamics-0.0.8}/tests/file_io/read/test_read_tiff.py +0 -0
  244. {careamics-0.0.7 → careamics-0.0.8}/tests/file_io/write/test_get_write_func.py +0 -0
  245. {careamics-0.0.7 → careamics-0.0.8}/tests/file_io/write/test_write_tiff.py +0 -0
  246. {careamics-0.0.7 → careamics-0.0.8}/tests/lightning/callbacks/prediction_writer_callback/test_cache_tiles_write_strategy.py +0 -0
  247. {careamics-0.0.7 → careamics-0.0.8}/tests/lightning/callbacks/prediction_writer_callback/test_file_path_utils.py +0 -0
  248. {careamics-0.0.7 → careamics-0.0.8}/tests/lightning/callbacks/prediction_writer_callback/test_prediction_writer_callback.py +0 -0
  249. {careamics-0.0.7 → careamics-0.0.8}/tests/lightning/callbacks/prediction_writer_callback/test_write_image_write_strategy.py +0 -0
  250. {careamics-0.0.7 → careamics-0.0.8}/tests/lightning/callbacks/prediction_writer_callback/test_write_strategy_factory.py +0 -0
  251. {careamics-0.0.7 → careamics-0.0.8}/tests/lightning/test_LVAE_lightning_module.py +0 -0
  252. {careamics-0.0.7 → careamics-0.0.8}/tests/lightning/test_lightning_api.py +0 -0
  253. {careamics-0.0.7 → careamics-0.0.8}/tests/lightning/test_lightning_module.py +0 -0
  254. {careamics-0.0.7 → careamics-0.0.8}/tests/lightning/test_lightning_module_onnx_exportability.py +0 -0
  255. {careamics-0.0.7 → careamics-0.0.8}/tests/lightning/test_predict_data_module.py +0 -0
  256. {careamics-0.0.7 → careamics-0.0.8}/tests/lightning/test_train_data_module.py +0 -0
  257. {careamics-0.0.7 → careamics-0.0.8}/tests/likelihood_modules/test_likelihoods.py +0 -0
  258. {careamics-0.0.7 → careamics-0.0.8}/tests/losses/test_lvae_losses.py +0 -0
  259. {careamics-0.0.7 → careamics-0.0.8}/tests/model_io/test_bmz_io.py +0 -0
  260. {careamics-0.0.7 → careamics-0.0.8}/tests/models/lvae/test_lvae_architecture.py +0 -0
  261. {careamics-0.0.7 → careamics-0.0.8}/tests/models/lvae/test_noise_model.py +0 -0
  262. {careamics-0.0.7 → careamics-0.0.8}/tests/models/lvae/test_utils.py +0 -0
  263. {careamics-0.0.7 → careamics-0.0.8}/tests/models/test_model_factory.py +0 -0
  264. {careamics-0.0.7 → careamics-0.0.8}/tests/models/test_unet.py +0 -0
  265. {careamics-0.0.7 → careamics-0.0.8}/tests/prediction_utils/test_lvae_prediction.py +0 -0
  266. {careamics-0.0.7 → careamics-0.0.8}/tests/prediction_utils/test_prediction_outputs.py +0 -0
  267. {careamics-0.0.7 → careamics-0.0.8}/tests/prediction_utils/test_stitch_prediction.py +0 -0
  268. {careamics-0.0.7 → careamics-0.0.8}/tests/test_careamist.py +0 -0
  269. {careamics-0.0.7 → careamics-0.0.8}/tests/test_conftest.py +0 -0
  270. {careamics-0.0.7 → careamics-0.0.8}/tests/transforms/test_compose.py +0 -0
  271. {careamics-0.0.7 → careamics-0.0.8}/tests/transforms/test_manipulate_n2v.py +0 -0
  272. {careamics-0.0.7 → careamics-0.0.8}/tests/transforms/test_normalize.py +0 -0
  273. {careamics-0.0.7 → careamics-0.0.8}/tests/transforms/test_pixel_manipulation.py +0 -0
  274. {careamics-0.0.7 → careamics-0.0.8}/tests/transforms/test_supported_transforms.py +0 -0
  275. {careamics-0.0.7 → careamics-0.0.8}/tests/transforms/test_tta.py +0 -0
  276. {careamics-0.0.7 → careamics-0.0.8}/tests/transforms/test_xy_flip.py +0 -0
  277. {careamics-0.0.7 → careamics-0.0.8}/tests/transforms/test_xy_random_rotate90.py +0 -0
  278. {careamics-0.0.7 → careamics-0.0.8}/tests/utils/test_autocorrelation.py +0 -0
  279. {careamics-0.0.7 → careamics-0.0.8}/tests/utils/test_base_enum.py +0 -0
  280. {careamics-0.0.7 → careamics-0.0.8}/tests/utils/test_context.py +0 -0
  281. {careamics-0.0.7 → careamics-0.0.8}/tests/utils/test_lightning_utils.py +0 -0
  282. {careamics-0.0.7 → careamics-0.0.8}/tests/utils/test_logging.py +0 -0
  283. {careamics-0.0.7 → careamics-0.0.8}/tests/utils/test_metrics.py +0 -0
  284. {careamics-0.0.7 → careamics-0.0.8}/tests/utils/test_serializers.py +0 -0
  285. {careamics-0.0.7 → careamics-0.0.8}/tests/utils/test_torch_utils.py +0 -0
  286. {careamics-0.0.7 → careamics-0.0.8}/tests/utils/test_wandb.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: careamics
3
- Version: 0.0.7
3
+ Version: 0.0.8
4
4
  Summary: Toolbox for running N2V and friends.
5
5
  Project-URL: homepage, https://careamics.github.io/
6
6
  Project-URL: repository, https://github.com/CAREamics/careamics
@@ -470,6 +470,7 @@ def get_predictions(
470
470
  dset: Dataset,
471
471
  batch_size: int,
472
472
  tile_size: Optional[tuple[int, int]] = None,
473
+ grid_size: Optional[int] = None,
473
474
  mmse_count: int = 1,
474
475
  num_workers: int = 4,
475
476
  ) -> tuple[dict, dict, dict]:
@@ -510,6 +511,7 @@ def get_predictions(
510
511
  dset=d,
511
512
  batch_size=batch_size,
512
513
  tile_size=tile_size,
514
+ grid_size=grid_size,
513
515
  mmse_count=mmse_count,
514
516
  num_workers=num_workers,
515
517
  )
@@ -527,6 +529,7 @@ def get_predictions(
527
529
  dset=dset,
528
530
  batch_size=batch_size,
529
531
  tile_size=tile_size,
532
+ grid_size=grid_size,
530
533
  mmse_count=mmse_count,
531
534
  num_workers=num_workers,
532
535
  )
@@ -589,6 +592,7 @@ def get_single_file_mmse(
589
592
  dset: Dataset,
590
593
  batch_size: int,
591
594
  tile_size: Optional[tuple[int, int]] = None,
595
+ grid_size: Optional[int] = None,
592
596
  mmse_count: int = 1,
593
597
  num_workers: int = 4,
594
598
  ) -> tuple[np.ndarray, np.ndarray]:
@@ -600,8 +604,9 @@ def get_single_file_mmse(
600
604
  shuffle=False,
601
605
  batch_size=batch_size,
602
606
  )
603
- if tile_size:
604
- dset.set_img_sz(tile_size, tile_size[-1] // 2)
607
+ if tile_size and grid_size:
608
+ dset.set_img_sz(tile_size, grid_size)
609
+
605
610
  model.eval()
606
611
  model.cuda()
607
612
  tile_mmse = []
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes
File without changes