careamics 0.0.4.1__tar.gz → 0.0.4.2__tar.gz

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  1. {careamics-0.0.4.1 → careamics-0.0.4.2}/PKG-INFO +1 -1
  2. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/model_io/bioimage/model_description.py +0 -9
  3. {careamics-0.0.4.1 → careamics-0.0.4.2}/.github/ISSUE_TEMPLATE/bug_report.md +0 -0
  4. {careamics-0.0.4.1 → careamics-0.0.4.2}/.github/ISSUE_TEMPLATE/feature_request.md +0 -0
  5. {careamics-0.0.4.1 → careamics-0.0.4.2}/.github/TEST_FAIL_TEMPLATE.md +0 -0
  6. {careamics-0.0.4.1 → careamics-0.0.4.2}/.github/pull_request_template.md +0 -0
  7. {careamics-0.0.4.1 → careamics-0.0.4.2}/.github/workflows/ci.yml +0 -0
  8. {careamics-0.0.4.1 → careamics-0.0.4.2}/.github/workflows/codecov.yml +0 -0
  9. {careamics-0.0.4.1 → careamics-0.0.4.2}/.github/workflows/lvae.yml +0 -0
  10. {careamics-0.0.4.1 → careamics-0.0.4.2}/.gitignore +0 -0
  11. {careamics-0.0.4.1 → careamics-0.0.4.2}/.pre-commit-config.yaml +0 -0
  12. {careamics-0.0.4.1 → careamics-0.0.4.2}/LICENSE +0 -0
  13. {careamics-0.0.4.1 → careamics-0.0.4.2}/README.md +0 -0
  14. {careamics-0.0.4.1 → careamics-0.0.4.2}/codecov.yml +0 -0
  15. {careamics-0.0.4.1 → careamics-0.0.4.2}/mypy.ini +0 -0
  16. {careamics-0.0.4.1 → careamics-0.0.4.2}/pyproject.toml +0 -0
  17. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/__init__.py +0 -0
  18. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/careamist.py +0 -0
  19. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/cli/__init__.py +0 -0
  20. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/cli/conf.py +0 -0
  21. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/cli/main.py +0 -0
  22. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/__init__.py +0 -0
  23. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/architectures/__init__.py +0 -0
  24. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/architectures/architecture_model.py +0 -0
  25. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/architectures/custom_model.py +0 -0
  26. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/architectures/lvae_model.py +0 -0
  27. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/architectures/register_model.py +0 -0
  28. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/architectures/unet_model.py +0 -0
  29. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/callback_model.py +0 -0
  30. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/configuration_factory.py +0 -0
  31. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/configuration_model.py +0 -0
  32. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/data_model.py +0 -0
  33. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/fcn_algorithm_model.py +0 -0
  34. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/inference_model.py +0 -0
  35. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/likelihood_model.py +0 -0
  36. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/nm_model.py +0 -0
  37. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/optimizer_models.py +0 -0
  38. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/references/__init__.py +0 -0
  39. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/references/algorithm_descriptions.py +0 -0
  40. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/references/references.py +0 -0
  41. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/support/__init__.py +0 -0
  42. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/support/supported_activations.py +0 -0
  43. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/support/supported_algorithms.py +0 -0
  44. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/support/supported_architectures.py +0 -0
  45. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/support/supported_data.py +0 -0
  46. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/support/supported_loggers.py +0 -0
  47. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/support/supported_losses.py +0 -0
  48. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/support/supported_optimizers.py +0 -0
  49. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/support/supported_pixel_manipulations.py +0 -0
  50. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/support/supported_struct_axis.py +0 -0
  51. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/support/supported_transforms.py +0 -0
  52. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/tile_information.py +0 -0
  53. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/training_model.py +0 -0
  54. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/transformations/__init__.py +0 -0
  55. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/transformations/n2v_manipulate_model.py +0 -0
  56. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/transformations/normalize_model.py +0 -0
  57. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/transformations/transform_model.py +0 -0
  58. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/transformations/transform_union.py +0 -0
  59. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/transformations/xy_flip_model.py +0 -0
  60. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/transformations/xy_random_rotate90_model.py +0 -0
  61. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/vae_algorithm_model.py +0 -0
  62. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/validators/__init__.py +0 -0
  63. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/config/validators/validator_utils.py +0 -0
  64. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/conftest.py +0 -0
  65. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/dataset/__init__.py +0 -0
  66. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/dataset/dataset_utils/__init__.py +0 -0
  67. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/dataset/dataset_utils/dataset_utils.py +0 -0
  68. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/dataset/dataset_utils/file_utils.py +0 -0
  69. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/dataset/dataset_utils/iterate_over_files.py +0 -0
  70. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/dataset/dataset_utils/running_stats.py +0 -0
  71. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/dataset/in_memory_dataset.py +0 -0
  72. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/dataset/in_memory_pred_dataset.py +0 -0
  73. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/dataset/in_memory_tiled_pred_dataset.py +0 -0
  74. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/dataset/iterable_dataset.py +0 -0
  75. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/dataset/iterable_pred_dataset.py +0 -0
  76. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/dataset/iterable_tiled_pred_dataset.py +0 -0
  77. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/dataset/patching/__init__.py +0 -0
  78. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/dataset/patching/patching.py +0 -0
  79. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/dataset/patching/random_patching.py +0 -0
  80. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/dataset/patching/sequential_patching.py +0 -0
  81. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/dataset/patching/validate_patch_dimension.py +0 -0
  82. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/dataset/tiling/__init__.py +0 -0
  83. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/dataset/tiling/collate_tiles.py +0 -0
  84. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/dataset/tiling/lvae_tiled_patching.py +0 -0
  85. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/dataset/tiling/tiled_patching.py +0 -0
  86. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/dataset/zarr_dataset.py +0 -0
  87. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/file_io/__init__.py +0 -0
  88. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/file_io/read/__init__.py +0 -0
  89. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/file_io/read/get_func.py +0 -0
  90. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/file_io/read/tiff.py +0 -0
  91. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/file_io/read/zarr.py +0 -0
  92. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/file_io/write/__init__.py +0 -0
  93. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/file_io/write/get_func.py +0 -0
  94. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/file_io/write/tiff.py +0 -0
  95. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/lightning/__init__.py +0 -0
  96. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/lightning/callbacks/__init__.py +0 -0
  97. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/lightning/callbacks/hyperparameters_callback.py +0 -0
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  103. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/lightning/callbacks/progress_bar_callback.py +0 -0
  104. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/lightning/lightning_module.py +0 -0
  105. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/lightning/predict_data_module.py +0 -0
  106. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/lightning/train_data_module.py +0 -0
  107. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/losses/__init__.py +0 -0
  108. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/losses/fcn/__init__.py +0 -0
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  110. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/losses/loss_factory.py +0 -0
  111. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/losses/lvae/__init__.py +0 -0
  112. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/losses/lvae/loss_utils.py +0 -0
  113. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/losses/lvae/losses.py +0 -0
  114. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/lvae_training/__init__.py +0 -0
  115. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/lvae_training/dataset/__init__.py +0 -0
  116. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/lvae_training/dataset/config.py +0 -0
  117. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/lvae_training/dataset/lc_dataset.py +0 -0
  118. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/lvae_training/dataset/multich_dataset.py +0 -0
  119. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/lvae_training/dataset/multifile_dataset.py +0 -0
  120. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/lvae_training/dataset/types.py +0 -0
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  123. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/lvae_training/dataset/utils/empty_patch_fetcher.py +0 -0
  124. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/lvae_training/dataset/utils/index_manager.py +0 -0
  125. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/lvae_training/dataset/utils/index_switcher.py +0 -0
  126. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/lvae_training/eval_utils.py +0 -0
  127. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/lvae_training/get_config.py +0 -0
  128. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/lvae_training/lightning_module.py +0 -0
  129. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/lvae_training/metrics.py +0 -0
  130. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/lvae_training/train_lvae.py +0 -0
  131. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/lvae_training/train_utils.py +0 -0
  132. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/model_io/__init__.py +0 -0
  133. {careamics-0.0.4.1 → careamics-0.0.4.2}/src/careamics/model_io/bioimage/__init__.py +0 -0
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{careamics-0.0.4.1 → careamics-0.0.4.2}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: careamics
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- Version: 0.0.4.1
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+ Version: 0.0.4.2
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  Summary: Toolbox for running N2V and friends.
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  Project-URL: homepage, https://careamics.github.io/
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  Project-URL: repository, https://github.com/CAREamics/careamics
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@@ -284,15 +284,6 @@ def create_model_description(
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  weights=weights_descr,
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  attachments=[FileDescr(source=config_path)],
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  cite=config.get_algorithm_citations(),
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- config={ # conversion from float32 to float64 creates small differences...
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- "bioimageio": {
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- "test_kwargs": {
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- "pytorch_state_dict": {
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- "decimals": 0, # ...so we relax the constraints on the decimals
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- }
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- }
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- }
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- },
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  )
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  return model
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