cardiac-geometriesx 0.5.0__tar.gz → 0.5.1__tar.gz

{cardiac_geometriesx-0.5.0/src/cardiac_geometriesx.egg-info → cardiac_geometriesx-0.5.1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: cardiac-geometriesx
-Version: 0.5.0
+Version: 0.5.1
 Summary: A python library for cardiac geometries
 Author-email: Henrik Finsberg <henriknf@simula.no>
 License: MIT

{cardiac_geometriesx-0.5.0 → cardiac_geometriesx-0.5.1}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "cardiac-geometriesx"
-version = "0.5.0"
+version = "0.5.1"
 description = "A python library for cardiac geometries"
 authors = [{name = "Henrik Finsberg", email = "henriknf@simula.no"}]
 license = {text = "MIT"}
@@ -177,7 +177,7 @@ tag = true
 sign_tags = false
 tag_name = "v{new_version}"
 tag_message = "Bump version: {current_version} → {new_version}"
-current_version = "0.5.0"
+current_version = "0.5.1"
 
 
 [[tool.bumpversion.files]]

{cardiac_geometriesx-0.5.0 → cardiac_geometriesx-0.5.1/src/cardiac_geometriesx.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: cardiac-geometriesx
-Version: 0.5.0
+Version: 0.5.1
 Summary: A python library for cardiac geometries
 Author-email: Henrik Finsberg <henriknf@simula.no>
 License: MIT

{cardiac_geometriesx-0.5.0 → cardiac_geometriesx-0.5.1}/tests/test_cli.py

@@ -7,6 +7,20 @@ from click.testing import CliRunner
 
 from cardiac_geometries import Geometry, cli
 
+try:
+    import ldrb  # noqa: F401
+
+    HAS_LDRB = True
+except ImportError:
+    HAS_LDRB = False
+
+try:
+    import ukb.cli  # noqa: F401
+
+    HAS_UKB = True
+except ImportError:
+    HAS_UKB = False
+
 
 @pytest.mark.parametrize(
     "script",
@@ -38,6 +52,23 @@ def test_script(fiber_space, script, tmp_path: Path):
         assert geo.f0 is not None
 
 
+@pytest.mark.skipif(not HAS_LDRB, reason="LDRB atlas is not installed")
+def test_biv_fibers(tmp_path: Path):
+    runner = CliRunner()
+
+    comm = MPI.COMM_WORLD
+    path = comm.bcast(tmp_path, root=0)
+
+    res = runner.invoke(
+        cli.biv_ellipsoid, [path.as_posix()], "--create-fibers", "--fiber-space", "P_1"
+    )
+    assert res.exit_code == 0
+    assert path.is_dir()
+
+    geo = Geometry.from_folder(comm=comm, folder=path)
+    assert geo.mesh.geometry.dim == 3
+
+
 @pytest.mark.parametrize(
     "script",
     [
@@ -63,6 +94,7 @@ def test_script_no_fibers(script, tmp_path: Path):
 
 @pytest.mark.parametrize("clipped", [True, False])
 @pytest.mark.parametrize("case", ["ED", "ES"])
+@pytest.mark.skipif(not HAS_UKB, reason="UKB atlas is not installed")
 def test_ukb(tmp_path: Path, case: str, clipped: bool):
     runner = CliRunner()