cardiac-geometriesx 0.4.7__tar.gz → 0.4.8__tar.gz

{cardiac_geometriesx-0.4.7/src/cardiac_geometriesx.egg-info → cardiac_geometriesx-0.4.8}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: cardiac-geometriesx
-Version: 0.4.7
+Version: 0.4.8
 Summary: A python library for cardiac geometries
 Author-email: Henrik Finsberg <henriknf@simula.no>
 License: MIT

{cardiac_geometriesx-0.4.7 → cardiac_geometriesx-0.4.8}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "cardiac-geometriesx"
-version = "0.4.7"
+version = "0.4.8"
 description = "A python library for cardiac geometries"
 authors = [{name = "Henrik Finsberg", email = "henriknf@simula.no"}]
 license = {text = "MIT"}
@@ -177,7 +177,7 @@ tag = true
 sign_tags = false
 tag_name = "v{new_version}"
 tag_message = "Bump version: {current_version} → {new_version}"
-current_version = "0.4.7"
+current_version = "0.4.8"
 
 
 [[tool.bumpversion.files]]

{cardiac_geometriesx-0.4.7 → cardiac_geometriesx-0.4.8}/src/cardiac_geometries/cli.py

@@ -209,7 +209,6 @@ def ukb(
     "--create-fibers",
     default=False,
     is_flag=True,
-    type=bool,
     help="If True create analytic fibers",
     show_default=True,
 )
@@ -431,7 +430,6 @@ def lv_ellipsoid(
     "--create-fibers",
     default=False,
     is_flag=True,
-    type=bool,
     help="If True create analytic fibers",
     show_default=True,
 )
@@ -699,7 +697,6 @@ def biv_ellipsoid(
     "--create-fibers",
     default=False,
     is_flag=True,
-    type=bool,
     help="If True create analytic fibers",
     show_default=True,
 )
@@ -837,7 +834,6 @@ def biv_ellipsoid_torso(
     "--create-fibers",
     default=False,
     is_flag=True,
-    type=bool,
     help="If True create analytic fibers",
     show_default=True,
 )

{cardiac_geometriesx-0.4.7 → cardiac_geometriesx-0.4.8}/src/cardiac_geometries/geometry.py

@@ -98,7 +98,12 @@ class Geometry:
         self.mesh.comm.barrier()
 
     @classmethod
-    def from_file(cls, comm: MPI.Intracomm, path: str | Path) -> "Geometry":
+    def from_file(
+        cls,
+        comm: MPI.Intracomm,
+        path: str | Path,
+        function_space_data: dict[str, np.ndarray] | None = None,
+    ) -> "Geometry":
         path = Path(path)
 
         mesh = adios4dolfinx.read_mesh(comm=comm, filename=path)
@@ -118,10 +123,12 @@ class Geometry:
                 tags[name] = None
 
         functions = {}
-        function_space = adios4dolfinx.read_attributes(
-            comm=comm, filename=path, name="function_space"
-        )
-        for name, el in function_space.items():
+        if function_space_data is None:
+            function_space_data = adios4dolfinx.read_attributes(
+                comm=comm, filename=path, name="function_space"
+            )
+        assert isinstance(function_space_data, dict), "function_space_data must be a dictionary"
+        for name, el in function_space_data.items():
             element = utils.array2element(el)
             V = dolfinx.fem.functionspace(mesh, element)
             f = dolfinx.fem.Function(V, name=name)

{cardiac_geometriesx-0.4.7 → cardiac_geometriesx-0.4.8/src/cardiac_geometriesx.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: cardiac-geometriesx
-Version: 0.4.7
+Version: 0.4.8
 Summary: A python library for cardiac geometries
 Author-email: Henrik Finsberg <henriknf@simula.no>
 License: MIT