cardiac-geometriesx 0.1.0__tar.gz → 0.1.1__tar.gz

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  1. {cardiac_geometriesx-0.1.0 → cardiac_geometriesx-0.1.1}/PKG-INFO +1 -1
  2. {cardiac_geometriesx-0.1.0 → cardiac_geometriesx-0.1.1}/pyproject.toml +2 -2
  3. {cardiac_geometriesx-0.1.0 → cardiac_geometriesx-0.1.1}/src/cardiac_geometries/fibers/utils.py +3 -5
  4. {cardiac_geometriesx-0.1.0 → cardiac_geometriesx-0.1.1}/src/cardiac_geometries/geometry.py +1 -1
  5. {cardiac_geometriesx-0.1.0 → cardiac_geometriesx-0.1.1}/src/cardiac_geometriesx.egg-info/PKG-INFO +1 -1
  6. {cardiac_geometriesx-0.1.0 → cardiac_geometriesx-0.1.1}/README.md +0 -0
  7. {cardiac_geometriesx-0.1.0 → cardiac_geometriesx-0.1.1}/setup.cfg +0 -0
  8. {cardiac_geometriesx-0.1.0 → cardiac_geometriesx-0.1.1}/src/cardiac_geometries/__init__.py +0 -0
  9. {cardiac_geometriesx-0.1.0 → cardiac_geometriesx-0.1.1}/src/cardiac_geometries/cli.py +0 -0
  10. {cardiac_geometriesx-0.1.0 → cardiac_geometriesx-0.1.1}/src/cardiac_geometries/fibers/__init__.py +0 -0
  11. {cardiac_geometriesx-0.1.0 → cardiac_geometriesx-0.1.1}/src/cardiac_geometries/fibers/lv_ellipsoid.py +0 -0
  12. {cardiac_geometriesx-0.1.0 → cardiac_geometriesx-0.1.1}/src/cardiac_geometries/fibers/slab.py +0 -0
  13. {cardiac_geometriesx-0.1.0 → cardiac_geometriesx-0.1.1}/src/cardiac_geometries/mesh.py +0 -0
  14. {cardiac_geometriesx-0.1.0 → cardiac_geometriesx-0.1.1}/src/cardiac_geometries/utils.py +0 -0
  15. {cardiac_geometriesx-0.1.0 → cardiac_geometriesx-0.1.1}/src/cardiac_geometriesx.egg-info/SOURCES.txt +0 -0
  16. {cardiac_geometriesx-0.1.0 → cardiac_geometriesx-0.1.1}/src/cardiac_geometriesx.egg-info/dependency_links.txt +0 -0
  17. {cardiac_geometriesx-0.1.0 → cardiac_geometriesx-0.1.1}/src/cardiac_geometriesx.egg-info/entry_points.txt +0 -0
  18. {cardiac_geometriesx-0.1.0 → cardiac_geometriesx-0.1.1}/src/cardiac_geometriesx.egg-info/not-zip-safe +0 -0
  19. {cardiac_geometriesx-0.1.0 → cardiac_geometriesx-0.1.1}/src/cardiac_geometriesx.egg-info/requires.txt +0 -0
  20. {cardiac_geometriesx-0.1.0 → cardiac_geometriesx-0.1.1}/src/cardiac_geometriesx.egg-info/top_level.txt +0 -0
  21. {cardiac_geometriesx-0.1.0 → cardiac_geometriesx-0.1.1}/tests/test_cli.py +0 -0
{cardiac_geometriesx-0.1.0 → cardiac_geometriesx-0.1.1}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: cardiac-geometriesx
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- Version: 0.1.0
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+ Version: 0.1.1
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  Summary: A python library for cardiac geometries
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  Author-email: Henrik Finsberg <henriknf@simula.no>
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  License: MIT
{cardiac_geometriesx-0.1.0 → cardiac_geometriesx-0.1.1}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
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  [project]
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  name = "cardiac-geometriesx"
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- version = "0.1.0"
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+ version = "0.1.1"
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  description = "A python library for cardiac geometries"
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  authors = [{name = "Henrik Finsberg", email = "henriknf@simula.no"}]
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  license = {text = "MIT"}
@@ -156,7 +156,7 @@ tag = true
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  sign_tags = false
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  tag_name = "v{new_version}"
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  tag_message = "Bump version: {current_version} → {new_version}"
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- current_version = "0.1.0"
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+ current_version = "0.1.1"
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  [[tool.bumpversion.files]]
{cardiac_geometriesx-0.1.0 → cardiac_geometriesx-0.1.1}/src/cardiac_geometries/fibers/utils.py RENAMED
@@ -20,11 +20,9 @@ def save_microstructure(
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  from ..utils import element2array
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  # Save for paraview visualization
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- with dolfinx.io.XDMFFile(mesh.comm, Path(outdir) / "microstructure.xdmf", "w") as file:
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- file.write_mesh(mesh)
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- for f in functions:
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- file.write_function(f)
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-
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+ with dolfinx.io.VTXWriter(mesh.comm, Path(outdir) / "microstructure-viz.bp", functions, engine="BP4") as file:
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+ file.write(0.0)
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+
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  # Save with proper function space
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  filename = Path(outdir) / "microstructure.bp"
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  for function in functions:
{cardiac_geometriesx-0.1.0 → cardiac_geometriesx-0.1.1}/src/cardiac_geometries/geometry.py RENAMED
@@ -12,7 +12,7 @@ import numpy as np
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  from . import utils
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- @dataclass(frozen=True, slots=True)
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+ @dataclass#(frozen=True, slots=True)
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  class Geometry:
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  mesh: dolfinx.mesh.Mesh
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  markers: dict[str, tuple[str, str]] = field(default_factory=dict)
{cardiac_geometriesx-0.1.0 → cardiac_geometriesx-0.1.1}/src/cardiac_geometriesx.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: cardiac-geometriesx
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- Version: 0.1.0
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+ Version: 0.1.1
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  Summary: A python library for cardiac geometries
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  Author-email: Henrik Finsberg <henriknf@simula.no>
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  License: MIT