cardiac-geometriesx 0.0.1__tar.gz

cardiac_geometriesx-0.0.1/PKG-INFO

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+Metadata-Version: 2.1
+Name: cardiac-geometriesx
+Version: 0.0.1
+Summary: A python library for cardiac geometries
+Author-email: Henrik Finsberg <henriknf@simula.no>
+License: MIT
+Project-URL: Homepage, https://github.com/finsberg/cardiac-geometriesx
+Keywords: cardiac,geometry
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3 :: Only
+Requires-Python: >=3.8
+Description-Content-Type: text/markdown
+Requires-Dist: fenics-dolfinx>=0.8.0
+Requires-Dist: meshio
+Requires-Dist: h5py
+Requires-Dist: structlog
+Requires-Dist: cardiac-geometries-core
+Requires-Dist: rich-click
+Requires-Dist: adios4dolfinx
+Provides-Extra: dev
+Requires-Dist: bump-my-version; extra == "dev"
+Requires-Dist: ipython; extra == "dev"
+Requires-Dist: pdbpp; extra == "dev"
+Requires-Dist: pre-commit; extra == "dev"
+Requires-Dist: twine; extra == "dev"
+Requires-Dist: wheel; extra == "dev"
+Provides-Extra: docs
+Provides-Extra: test
+Requires-Dist: pre-commit; extra == "test"
+Requires-Dist: pytest; extra == "test"
+Requires-Dist: pytest-cov; extra == "test"
+
+# Cardiac geometries
+
+Cardiac geometries for `dolfinx` (targeting v0.8).
+
+Install
+```
+python3 -m pip install git+https://github.com/ComputationalPhysiology/cardiac-geometriesx
+```
+
+Example usage
+```
+geox lv-ellipsoid --create-fibers lv-mesh
+```
+
+## Authors
+Henrik Finsberg (henriknf@simula.no)
+
+## License
+MIT

cardiac_geometriesx-0.0.1/README.md

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+# Cardiac geometries
+
+Cardiac geometries for `dolfinx` (targeting v0.8).
+
+Install
+```
+python3 -m pip install git+https://github.com/ComputationalPhysiology/cardiac-geometriesx
+```
+
+Example usage
+```
+geox lv-ellipsoid --create-fibers lv-mesh
+```
+
+## Authors
+Henrik Finsberg (henriknf@simula.no)
+
+## License
+MIT

cardiac_geometriesx-0.0.1/pyproject.toml

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+[build-system]
+requires = ["setuptools>=61.2"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "cardiac-geometriesx"
+version = "0.0.1"
+description = "A python library for cardiac geometries"
+authors = [{name = "Henrik Finsberg", email = "henriknf@simula.no"}]
+license = {text = "MIT"}
+classifiers = [
+    "License :: OSI Approved :: MIT License",
+    "Programming Language :: Python :: 3",
+    "Programming Language :: Python :: 3 :: Only",
+]
+keywords = ["cardiac", "geometry"]
+urls = {Homepage = "https://github.com/finsberg/cardiac-geometriesx" }
+requires-python = ">=3.8"
+dependencies = [
+    "fenics-dolfinx>=0.8.0",
+    "meshio",
+    "h5py",
+    "structlog",
+    "cardiac-geometries-core",
+    "rich-click",
+    "adios4dolfinx",
+]
+
+[project.readme]
+file = "README.md"
+content-type = "text/markdown"
+
+[project.optional-dependencies]
+dev = [
+    "bump-my-version",
+    "ipython",
+    "pdbpp",
+    "pre-commit",
+    "twine",
+    "wheel",
+]
+docs = [
+]
+test = [
+    "pre-commit",
+    "pytest",
+    "pytest-cov",
+]
+
+[project.scripts]
+geox = "cardiac_geometries.cli:app"
+
+[tool.setuptools]
+include-package-data = true
+package-dir = {"" = "src"}
+zip-safe = false
+
+[tool.setuptools.packages.find]
+where = ["src"]
+namespaces = false
+
+[tool.aliases]
+test = "pytest"
+
+[tool.pytest.ini_options]
+testpaths = ["tests"]
+
+[tool.isort]
+profile = "black"
+
+[tool.mypy]
+files = ["src/cardiac_geometries", "tests"]
+ignore_missing_imports = true
+exclude = [
+    "docs",
+    "examples",
+]
+
+
+
+[tool.ruff]
+
+# Exclude a variety of commonly ignored directories.
+exclude = [
+    ".bzr",
+    ".direnv",
+    ".eggs",
+    ".git",
+    ".hg",
+    ".mypy_cache",
+    ".nox",
+    ".pants.d",
+    ".pytype",
+    ".ruff_cache",
+    ".svn",
+    ".tox",
+    ".venv",
+    "__pypackages__",
+    "_build",
+    "buck-out",
+    "build",
+    "dist",
+    "node_modules",
+    "venv",
+]
+
+# Same as Black.
+line-length = 100
+
+# Assume Python 3.10.
+target-version = "py310"
+
+[tool.ruff.lint]
+# Enable pycodestyle (`E`) and Pyflakes (`F`) codes by default.
+select = ["E", "F"]
+ignore = ["E402", "E741", "E743", "E731"]
+
+# Allow autofix for all enabled rules (when `--fix`) is provided.
+fixable = ["A", "B", "C", "D", "E", "F"]
+unfixable = []
+
+# Allow unused variables when underscore-prefixed.
+dummy-variable-rgx = "^(_+|(_+[a-zA-Z0-9_]*[a-zA-Z0-9]+?))$"
+
+
+[tool.ruff.lint.mccabe]
+# Unlike Flake8, default to a complexity level of 10.
+max-complexity = 10
+
+
+[tool.bumpversion]
+allow_dirty = false
+commit = true
+message = "Bump version: {current_version} → {new_version}"
+tag = true
+sign_tags = false
+tag_name = "v{new_version}"
+tag_message = "Bump version: {current_version} → {new_version}"
+current_version = "0.0.1"
+
+
+[[tool.bumpversion.files]]
+filename = "pyproject.toml"
+search = 'version = "{current_version}"'
+replace = 'version = "{new_version}"'

cardiac_geometriesx-0.0.1/setup.cfg

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+[egg_info]
+tag_build = 
+tag_date = 0
+

cardiac_geometriesx-0.0.1/src/cardiac_geometries/__init__.py

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+from . import fibers
+from . import geometry
+from .geometry import Geometry
+from . import mesh
+from . import utils
+from . import cli
+
+__all__ = ["mesh", "fibers", "geometry", "Geometry", "utils", "cli"]