carbonation 0.1.0__tar.gz

carbonation-0.1.0/.gitignore

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+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+pip-wheel-metadata/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+__about__.py
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+db.sqlite3
+db.sqlite3-journal
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+.python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow
+__pypackages__/
+
+# Celery stuff
+celerybeat-schedule
+celerybeat.pid
+
+# SageMath parsed files
+*.sage.py
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/

carbonation-0.1.0/LICENSE.txt

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+MIT License
+
+Copyright (c) 2024-present Jonathan Olsten <jonathan.olsten@gmail.com>
+
+Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

carbonation-0.1.0/PKG-INFO

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+Metadata-Version: 2.3
+Name: carbonation
+Version: 0.1.0
+Summary: You can't have fizz without carbonation
+Project-URL: Documentation, https://github.com/jolsten/carbonation#readme
+Project-URL: Issues, https://github.com/jolsten/carbonation/issues
+Project-URL: Source, https://github.com/jolsten/carbonation
+Author-email: Jonathan Olsten <jonathan.olsten@gmail.com>
+License-Expression: MIT
+License-File: LICENSE.txt
+Classifier: Development Status :: 4 - Beta
+Classifier: Programming Language :: Python
+Classifier: Programming Language :: Python :: 3.8
+Classifier: Programming Language :: Python :: 3.9
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: Implementation :: CPython
+Classifier: Programming Language :: Python :: Implementation :: PyPy
+Requires-Python: >=3.8
+Requires-Dist: numba>=0.57
+Requires-Dist: numpy<1.26,>=1.19
+Requires-Dist: pyarrow>=7.0.0
+Requires-Dist: pydantic>=2.0
+Requires-Dist: typeconvert==0.2
+Provides-Extra: cli
+Requires-Dist: python-dateutil; extra == 'cli'
+Description-Content-Type: text/markdown
+
+# Carbonation
+
+[![PyPI - Version](https://img.shields.io/pypi/v/carbonation.svg)](https://pypi.org/project/carbonation)
+[![PyPI - Python Version](https://img.shields.io/pypi/pyversions/carbonation.svg)](https://pypi.org/project/carbonation)
+
+-----
+
+**Table of Contents**
+
+- [Installation](#installation)
+- [License](#license)
+
+## Installation
+
+```console
+pip install carbonation
+```
+
+## License
+
+`carbonation` is distributed under the terms of the [MIT](https://spdx.org/licenses/MIT.html) license.

carbonation-0.1.0/README.md

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+# Carbonation
+
+[![PyPI - Version](https://img.shields.io/pypi/v/carbonation.svg)](https://pypi.org/project/carbonation)
+[![PyPI - Python Version](https://img.shields.io/pypi/pyversions/carbonation.svg)](https://pypi.org/project/carbonation)
+
+-----
+
+**Table of Contents**
+
+- [Installation](#installation)
+- [License](#license)
+
+## Installation
+
+```console
+pip install carbonation
+```
+
+## License
+
+`carbonation` is distributed under the terms of the [MIT](https://spdx.org/licenses/MIT.html) license.

carbonation-0.1.0/pyproject.toml

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+[build-system]
+requires = ["hatchling", "hatch-vcs"]
+build-backend = "hatchling.build"
+
+[project]
+name = "carbonation"
+dynamic = ["version"]
+description = "You can't have fizz without carbonation"
+readme = "README.md"
+requires-python = ">=3.8"
+license = "MIT"
+keywords = []
+authors = [
+  { name = "Jonathan Olsten", email = "jonathan.olsten@gmail.com" },
+]
+classifiers = [
+  "Development Status :: 4 - Beta",
+  "Programming Language :: Python",
+  "Programming Language :: Python :: 3.8",
+  "Programming Language :: Python :: 3.9",
+  "Programming Language :: Python :: 3.10",
+  "Programming Language :: Python :: 3.11",
+  "Programming Language :: Python :: 3.12",
+  "Programming Language :: Python :: Implementation :: CPython",
+  "Programming Language :: Python :: Implementation :: PyPy",
+]
+dependencies = [
+  "typeconvert==0.2",
+  "numpy<1.26,>=1.19 ",
+  "numba>=0.57",
+  "pyarrow>=7.0.0",
+  "pydantic>=2.0",
+]
+
+[project.optional-dependencies]
+cli = ["python-dateutil"]
+
+[project.scripts]
+meas = "carbonation.cli.measurand:main"
+reframe = "carbonation.cli.reframe:main"
+
+[project.urls]
+Documentation = "https://github.com/jolsten/carbonation#readme"
+Issues = "https://github.com/jolsten/carbonation/issues"
+Source = "https://github.com/jolsten/carbonation"
+
+[tool.hatch.version]
+source = "vcs"
+
+[template.plugins.default]
+src-layout = true
+
+[tool.hatch.build.hooks.vcs]
+version-file = "src/carbonation/__about__.py"
+
+[tool.hatch.envs.default]
+dependencies = [
+  "pytest",
+  "pytest-cov",
+  "hypothesis",
+]
+
+[tool.hatch.envs.default.scripts]
+test = "pytest {args:tests}"
+test-cov = "coverage run -m pytest {args:tests}"
+cov-report = [
+  "- coverage combine",
+  "coverage report",
+]
+cov = [
+  "test-cov",
+  "cov-report",
+]
+
+[[tool.hatch.envs.all.matrix]]
+python = ["3.8", "3.9", "3.10", "3.11", "3.12"]
+
+[tool.hatch.envs.types]
+dependencies = [
+  "mypy>=1.0.0",
+]
+
+[tool.hatch.envs.types.scripts]
+check = "mypy --install-types --non-interactive {args:src/carbonation tests}"
+
+[tool.coverage.run]
+source_pkgs = ["carbonation*", "tests*"]
+branch = true
+parallel = true
+omit = [
+  "src/carbonation/_version.py",
+]
+
+[tool.coverage.paths]
+carbonation = ["src/carbonation", "*/carbonation/src/carbonation"]
+tests = ["tests", "*/carbonation/tests"]
+
+[tool.coverage.report]
+exclude_lines = [
+  "no cov",
+  "if __name__ == .__main__.:",
+  "if TYPE_CHECKING:",
+]

carbonation-0.1.0/src/carbonation/__about__.py

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+# file generated by setuptools_scm
+# don't change, don't track in version control
+TYPE_CHECKING = False
+if TYPE_CHECKING:
+    from typing import Tuple, Union
+    VERSION_TUPLE = Tuple[Union[int, str], ...]
+else:
+    VERSION_TUPLE = object
+
+version: str
+__version__: str
+__version_tuple__: VERSION_TUPLE
+version_tuple: VERSION_TUPLE
+
+__version__ = version = '0.1.0'
+__version_tuple__ = version_tuple = (0, 1, 0)

carbonation-0.1.0/src/carbonation/__init__.py

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+from carbonation._version import __version__

carbonation-0.1.0/src/carbonation/cli/measurand/__init__.py

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+import argparse
+import fileinput
+import re
+from itertools import zip_longest
+from typing import Iterable, List
+
+import numpy as np
+
+from carbonation.cli.utils import (
+    make_passthru_parser,
+    parse_data_to_ndarray,
+)
+from carbonation.measurand import Measurand, make_measurand
+from carbonation.measurand.utils import size_to_uint
+
+
+def grouper(iterable: Iterable, n: int):
+    "Collect data into fixed-length chunks or blocks"
+    # grouper('ABCDEFG', 3, 'x') --> ABC DEF Gxx"
+    args = [iter(iterable)] * n
+    return zip_longest(*args, fillvalue=None)
+
+
+RE_INT = re.compile(r"^\d+$")
+RE_RANGE = re.compile(r"^\d+-\d+$")
+RE_UNBOUNDED = re.compile(r"^\d+-")
+
+
+class ColumnSpec:
+    def __init__(self, spec: str) -> None:
+        self.spec = spec
+        if RE_INT.match(spec):
+            spec = int(spec) - 1
+            self.slice = slice(spec, spec + 1)
+        elif RE_RANGE.match(spec):
+            a, b = spec.split("-")
+            a = int(a) - 1
+            b = int(b) - 1
+            if a <= b:
+                self.slice = slice(a, b + 1)
+            else:
+                self.slice = slice(a, b - 1, -1)
+        elif RE_UNBOUNDED.match(spec):
+            a, b = spec.split("-")
+            a = int(a) - 1
+            self.slice = slice(a, a + 1)
+        else:
+            msg = f"column spec {spec!r} not valid"
+            raise ValueError(msg)
+
+    def __repr__(self) -> str:
+        return f"{self.__class__.__name__}(spec={self.spec!r})"
+
+
+def format_float(value: np.floating) -> str:
+    return f"{value: 13.6e}"
+
+
+def main() -> None:
+    parser = argparse.ArgumentParser(prog="meas")
+    parser.add_argument("-b", "--bits", type=int, default=8, help="input bits per word")
+    parser.add_argument(
+        "-w", "--width", type=int, default=None, help="width of column-spec columns"
+    )
+    parser.add_argument(
+        "-c", "--chunk-size", type=int, default=1000, help="processing chunk size"
+    )
+    parser.add_argument(
+        "--passthru",
+        "-p",
+        type=int,
+        default=1,
+        help="number of columns to pass thru to output",
+    )
+    parser.add_argument("measurand", type=str, nargs="+", help="measurand definition")
+    args = parser.parse_args()
+
+    if args.width is None:
+        width = len(f"{2**args.bits-1}")
+    else:
+        width = args.width
+
+    measurands: List[Measurand] = []
+    for spec in args.measurand:
+        try:
+            measurands.append(ColumnSpec(spec))
+        except ValueError:
+            if ";" not in spec:
+                spec = spec.replace("/", ";")
+            measurands.append(make_measurand(spec, word_size=args.bits))
+
+    line_parser = make_passthru_parser(args.passthru)
+    dtype = size_to_uint(args.bits)
+
+    # window = []
+    for line in fileinput.input("-"):
+        passthru, rest = line_parser(line)
+        rest = rest.strip().split()
+        print(passthru, end=" ")
+
+        data = parse_data_to_ndarray([rest], dtype=dtype)
+
+        # data = parse_data_to_pa_table(rest, pa.uint8())
+        # print(data)
+        # data = pa.Table.from_arrays([data], names=[str(i) for i in range(len(data))])
+        # data = np.array([int(x) for x in rest], dtype="u1")
+        # data = pa.array([int(x) for x in rest], pa.uint8())
+
+        for m in measurands:
+            if isinstance(m, ColumnSpec):
+                for value in rest[m.slice]:
+                    print(f"{value:>{width}}", end=" ")
+            elif isinstance(m, Measurand):
+                m_width = len(f"{2**m.size-1}")
+                value = m.build(data)[0]
+                if np.issubdtype(value, np.floating):
+                    print(f"{value:13.6e}", end=" ")
+                else:
+                    print(f"{value:>{m_width}}", end=" ")
+                # print(value, end=" ")
+                # print(type(value))
+            else:
+                raise TypeError
+            # print(value, end=" ")
+        print()

carbonation-0.1.0/src/carbonation/cli/measurand/__main__.py

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+from carbonation.cli.combine import main
+
+if __name__ == "__main__":
+    try:
+        main()
+    except (KeyboardInterrupt, BrokenPipeError):
+        pass

carbonation-0.1.0/src/carbonation/cli/reframe/__init__.py

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+import argparse
+import fileinput
+import re
+
+import numpy as np
+
+from carbonation.cli.utils import make_passthru_parser
+from carbonation.measurand.utils import size_to_uint
+from carbonation.utils import expand_column_list
+
+COL_RANGE = re.compile(r"^\d+-\d+$")
+BIT_RANGE = re.compile(r"^(?P<column_range>\d+-\d+)\:(?P<bit_range>\S+)$")
+
+
+class ReframeSpec:
+    def __init__(self, spec: str) -> None:
+        self.spec = spec
+        self.col_list = []
+        self.start_bit = None
+        self.stop_bit = None
+        if ":" in spec:
+            col_range, bit_range = spec.split(":")
+            start_bit, stop_bit = bit_range.split("-")
+            self.start_bit = int(start_bit)
+            self.stop_bit = int(stop_bit)
+            spec = col_range
+        self.col_list = expand_column_list(spec)
+
+    def __repr__(self) -> str:
+        return f"{self.__class__.__name__}(spec={self.spec!r})"
+
+
+def main():
+    parser = argparse.ArgumentParser(prog="reframe")
+    parser.add_argument("-b", "--bits", type=int, default=8, help="input bits per word")
+    parser.add_argument(
+        "-w", "--width", type=int, default=None, help="width of column-spec columns"
+    )
+    parser.add_argument(
+        "-c", "--chunk-size", type=int, default=1000, help="processing chunk size"
+    )
+    parser.add_argument(
+        "--passthru",
+        "-p",
+        type=int,
+        default=1,
+        help="number of columns to pass thru to output",
+    )
+    parser.add_argument("reframe_spec", type=str, help="reframe spec")
+    args = parser.parse_args()
+
+    width = len(f"{2**args.bits-1}")
+    reframe = ReframeSpec(args.reframe_spec)
+    col_list = [x - 1 for x in reframe.col_list]
+
+    line_parser = make_passthru_parser(args.passthru)
+    dtype = size_to_uint(args.bits)
+
+    for line in fileinput.input("-"):
+        passthru, rest = line_parser(line)
+        rest = rest.strip().split()
+        print(passthru, end=" ")
+
+        data = np.array([int(x) for x in rest], dtype=dtype)
+
+        if reframe.stop_bit is not None:
+            data = np.bitwise_and(data, 2**reframe.stop_bit - 1)
+        if reframe.start_bit is not None:
+            data = np.right_shift(data, reframe.start_bit - 1)
+
+        for value in data[col_list]:
+            print(f"{value:>{width}}", end=" ")

carbonation-0.1.0/src/carbonation/cli/reframe/__main__.py

@@ -0,0 +1,7 @@
+from carbonation.cli.measurand import main
+
+if __name__ == "__main__":
+    try:
+        main()
+    except (KeyboardInterrupt, BrokenPipeError):
+        pass

carbonation-0.1.0/src/carbonation/cli/utils.py

@@ -0,0 +1,54 @@
+import re
+from typing import Callable, List, Literal, Protocol, Tuple, Union
+
+import numpy as np
+import pyarrow as pa
+
+UIntDtype = Literal["u1", "u2", "u4", "u8"]
+
+
+# def parse_line(
+#     line: str,
+#     dtype: UIntDtype,
+#     pass_: int,
+# ) -> Tuple[datetime.datetime, np.ndarray]:
+#     parts = line.strip().split()
+#     passing, values = parts[0:pass_], parts[pass_:]
+#     values = np.array([int(x) for x in values], dtype=dtype)
+#     return passing, values
+
+
+class LineParser(Protocol):
+    def __call__(self, passthru: int, dtype: UIntDtype) -> Tuple[str, np.ndarray]: ...
+
+
+def make_passthru_parser(passthru: int) -> Callable[[str], Tuple[str, str]]:
+    """Creates a callable that returns two strings:
+    - one containing the first N words as it appears in the original string
+    - one containing the rest of the string
+    """
+    pattern = r"^\s*(" + r"\s+".join([r"\S+" for _ in range(passthru)]) + r")"
+    pattern = re.compile(pattern)
+
+    def line_parser(line: str) -> Tuple[str, np.ndarray]:
+        if m := pattern.match(line):
+            passthru = m.groups()[0]
+            rest = line[m.end() :]
+            return passthru, rest
+
+    return line_parser
+
+
+def parse_data_to_ndarray(values: List[List[str]], dtype=UIntDtype) -> np.ndarray:
+    values = [int(val) for row in values for val in row]
+    return np.array(values, dtype=dtype)
+
+
+def parse_data_to_pa_table(
+    values: List[List[str]], dtype: Union[pa.uint8, pa.uint16, pa.uint32, pa.uint64]
+) -> pa.array:
+    values = [[int(x) if x != "?" else None] for x in values]
+    print("values =", values)
+    arrays = [pa.array(x, dtype) for x in values]
+    print("arrays =", arrays)
+    return pa.Table.from_arrays(arrays, names=[str(i) for i in range(len(arrays))])

carbonation-0.1.0/src/carbonation/measurand/__init__.py

@@ -0,0 +1,4 @@
+from carbonation.measurand.measurand import Measurand, make_measurand
+from carbonation.measurand.parameter import Parameter, make_parameter
+
+__all__ = ["make_measurand", "Measurand", "make_parameter", "Parameter"]