calkit-python 0.50.2__tar.gz → 0.50.4__tar.gz

calkit_python-0.50.4/.calkit/stage-commands/one-pager-font.sh

@@ -0,0 +1 @@
+cp "$(kpsewhich texgyreheros-regular.otf)" docs/one-pager/

{calkit_python-0.50.2 → calkit_python-0.50.4}/.calkit/stage-runs.json

@@ -19,70 +19,70 @@
     }
   },
   "budget-2027-figure": {
-    "start_time": "2026-10-27T18:13:05.808000",
-    "end_time": "2026-10-27T18:13:06.597000",
+    "start_time": "2026-10-30T18:47:49.630000",
+    "end_time": "2026-10-30T18:47:53.424000",
     "environment": "dev",
-    "git_rev": "6a4bdff7eeb375fe9682ea54948f21b0e657103c",
+    "git_rev": "f5612e4cad5d4d7c682181c69d79ed952dfa8a42",
     "git_dirty": true,
-    "dvc_lock_hash": "sha256:c593381caf793554c569f3937e9e8172370eae5cf671f1db097965f988b86a19",
-    "calkit_version": "0.49.6.dev9+g6a4bdff7",
-    "calkit_git_rev": "6a4bdff7eeb375fe9682ea54948f21b0e657103c",
+    "dvc_lock_hash": "sha256:6dcb7ae94b8fd6a9d8f306cdf4c1441d19899ac915d77044c9071bf0381b57a8",
+    "calkit_version": "0.50.4.dev5+gff5aa5458.d20261030",
+    "calkit_git_rev": "f5612e4cad5d4d7c682181c69d79ed952dfa8a42",
     "system": {
-      "machine_id": "680295DC-2853-59C0-82C9-87907FA3FEDB",
+      "machine_id": "33C4DDA7-7423-5B6A-B86F-EA6859EB058E",
       "os": "Darwin",
-      "os_version": "25.6.0",
+      "os_version": "27.0.0",
       "machine": "arm64",
       "processor": "arm",
-      "cpu_count": 14,
-      "memory_gb": 24.0
+      "cpu_count": 10,
+      "memory_gb": 64.0
     }
   },
   "find-calkit-papers": {
-    "start_time": "2026-10-28T01:16:37.790000",
-    "end_time": "2026-10-28T01:16:46.328000",
+    "start_time": "2026-11-01T00:27:10.659000",
+    "end_time": "2026-11-01T00:27:27.007000",
     "environment": "dev",
-    "git_rev": "29939214d8f5ab8dde092f6686259fc041494b37",
+    "git_rev": "dabe76541877b7254c22527f5774b37597513dc5",
     "git_dirty": false,
-    "dvc_lock_hash": "sha256:bc7c14502f38645fab88512e2e66138000dd75ee09880905b48eead89ccb5e89",
-    "calkit_version": "0.49.6.dev99+g77733373d",
-    "calkit_git_rev": "29939214d8f5ab8dde092f6686259fc041494b37",
+    "dvc_lock_hash": "sha256:68957da4f5d8b350fecbae03063ac0a41c780252e8d9867a2fbc0168a3bbb64a",
+    "calkit_version": "0.50.4.dev17+gdabe7654",
+    "calkit_git_rev": "dabe76541877b7254c22527f5774b37597513dc5",
     "system": {
-      "machine_id": "33C4DDA7-7423-5B6A-B86F-EA6859EB058E",
+      "machine_id": "680295DC-2853-59C0-82C9-87907FA3FEDB",
       "os": "Darwin",
-      "os_version": "27.0.0",
+      "os_version": "25.6.0",
       "machine": "arm64",
       "processor": "arm",
-      "cpu_count": 10,
-      "memory_gb": 64.0
+      "cpu_count": 14,
+      "memory_gb": 24.0
     }
   },
   "find-calkit-projects": {
-    "start_time": "2026-10-28T01:15:16.346000",
-    "end_time": "2026-10-28T01:16:37.790000",
+    "start_time": "2026-11-01T00:23:31.224000",
+    "end_time": "2026-11-01T00:27:10.659000",
     "environment": "dev",
-    "git_rev": "29939214d8f5ab8dde092f6686259fc041494b37",
+    "git_rev": "dabe76541877b7254c22527f5774b37597513dc5",
     "git_dirty": false,
-    "dvc_lock_hash": "sha256:e9204957c0aeb33de9275a681550b94afec31b2c66d90fca368845421396a338",
-    "calkit_version": "0.49.6.dev99+g77733373d",
-    "calkit_git_rev": "29939214d8f5ab8dde092f6686259fc041494b37",
+    "dvc_lock_hash": "sha256:0363653a2a85b92d58304030669e65ed95f43bb6c3ec16853c0293a357b59c82",
+    "calkit_version": "0.50.4.dev17+gdabe7654",
+    "calkit_git_rev": "dabe76541877b7254c22527f5774b37597513dc5",
     "system": {
-      "machine_id": "33C4DDA7-7423-5B6A-B86F-EA6859EB058E",
+      "machine_id": "680295DC-2853-59C0-82C9-87907FA3FEDB",
       "os": "Darwin",
-      "os_version": "27.0.0",
+      "os_version": "25.6.0",
       "machine": "arm64",
       "processor": "arm",
-      "cpu_count": 10,
-      "memory_gb": 64.0
+      "cpu_count": 14,
+      "memory_gb": 24.0
     }
   },
   "latex-image-readme/sizes": {
-    "start_time": "2026-10-28T15:18:48.239000",
-    "end_time": "2026-10-28T15:19:00.045000",
-    "git_rev": "2e4fe77b56665128881e069e884f7a9431f14745",
+    "start_time": "2026-10-31T00:27:59.910000",
+    "end_time": "2026-10-31T00:28:12.585000",
+    "git_rev": "41de276515229c36fbed36595f6db32f0321a13c",
     "git_dirty": false,
-    "dvc_lock_hash": "sha256:24c97bcc3b977ccd87b6ebfc3692030fd9efb66991390fb1a92814459ba0e545",
-    "calkit_version": "0.50.2.dev92+g2e4fe77b5",
-    "calkit_git_rev": "2e4fe77b56665128881e069e884f7a9431f14745",
+    "dvc_lock_hash": "sha256:f066c72f4260224a4889caadfb7ad917f42f54d197a1e3eafd675271016c6b6e",
+    "calkit_version": "0.50.4.dev197+gb58bc9200",
+    "calkit_git_rev": "41de276515229c36fbed36595f6db32f0321a13c",
     "system": {
       "machine_id": "33C4DDA7-7423-5B6A-B86F-EA6859EB058E",
       "os": "Darwin",
@@ -94,33 +94,33 @@
     }
   },
   "latex-word-round-trip": {
-    "start_time": "2026-10-28T15:18:28.837000",
-    "end_time": "2026-10-28T15:18:48.199000",
+    "start_time": "2026-10-31T22:35:22.354000",
+    "end_time": "2026-10-31T22:35:38.465000",
     "environment": "dev",
-    "git_rev": "2e4fe77b56665128881e069e884f7a9431f14745",
+    "git_rev": "4fcdd5af364905290ab7df0b167df4a019ae931b",
     "git_dirty": false,
-    "dvc_lock_hash": "sha256:0dec4c863465f5225dc12c61425baad4973903e9e727e13052ba737065db6f0a",
-    "calkit_version": "0.50.2.dev92+g2e4fe77b5",
-    "calkit_git_rev": "2e4fe77b56665128881e069e884f7a9431f14745",
+    "dvc_lock_hash": "sha256:9fbe10ef8ed6f5b5e810aacaa603893dd6f2f8750544c6d301de05ee92e542d8",
+    "calkit_version": "0.50.4.dev15+g4fcdd5af",
+    "calkit_git_rev": "4fcdd5af364905290ab7df0b167df4a019ae931b",
     "system": {
-      "machine_id": "33C4DDA7-7423-5B6A-B86F-EA6859EB058E",
+      "machine_id": "680295DC-2853-59C0-82C9-87907FA3FEDB",
       "os": "Darwin",
-      "os_version": "27.0.0",
+      "os_version": "25.6.0",
       "machine": "arm64",
       "processor": "arm",
-      "cpu_count": 10,
-      "memory_gb": 64.0
+      "cpu_count": 14,
+      "memory_gb": 24.0
     }
   },
   "latex-word-round-trip-figure": {
-    "start_time": "2026-10-28T00:28:06.128000",
-    "end_time": "2026-10-28T00:28:08.332000",
+    "start_time": "2026-10-28T22:03:53.637000",
+    "end_time": "2026-10-28T22:03:55.654000",
     "environment": "dev",
-    "git_rev": "9e31d174d616f1ee61a1839b7942a5bc433d8f80",
-    "git_dirty": true,
-    "dvc_lock_hash": "sha256:9d3a24d4a7d50abe49f657e9ea8ff5fadf0865c3cc34c1239cf79eba5214df75",
-    "calkit_version": "0.50.1.dev14+g9e31d174.d20261028",
-    "calkit_git_rev": "9e31d174d616f1ee61a1839b7942a5bc433d8f80",
+    "git_rev": "d1eaf2317c1427a047913683943a376e4c467ce3",
+    "git_dirty": false,
+    "dvc_lock_hash": "sha256:02253e58cc245886b3f3a7fadb6f1c48a5f3019fdbce350b3a0f362f7bb34655",
+    "calkit_version": "0.50.3.dev15+gd1eaf231",
+    "calkit_git_rev": "d1eaf2317c1427a047913683943a376e4c467ce3",
     "system": {
       "machine_id": "680295DC-2853-59C0-82C9-87907FA3FEDB",
       "os": "Darwin",
@@ -131,14 +131,33 @@
       "memory_gb": 24.0
     }
   },
+  "one-pager-font": {
+    "start_time": "2026-10-30T22:26:37.528000",
+    "end_time": "2026-10-30T22:26:38.201000",
+    "environment": "tex",
+    "git_rev": "ff951096a6b4bab3b7b8d704803400d896f23f19",
+    "git_dirty": false,
+    "dvc_lock_hash": "sha256:058fdde0c2d38cac8839169442b183a2da27bed59ce920492748ba38429c5f00",
+    "calkit_version": "0.50.4.dev184+gff951096",
+    "calkit_git_rev": "ff951096a6b4bab3b7b8d704803400d896f23f19",
+    "system": {
+      "machine_id": "dea6d6a5eb9548ec97f8b91c56f0bffa",
+      "os": "Linux",
+      "os_version": "7.0.0-1017-azure",
+      "machine": "x86_64",
+      "processor": "x86_64",
+      "cpu_count": 4,
+      "memory_gb": 15.6
+    }
+  },
   "one-pager/pdf": {
-    "start_time": "2026-10-28T00:26:18.709000",
-    "end_time": "2026-10-28T00:26:21.115000",
-    "git_rev": "be56c66d622c5e78d3de3949bcefc3a812b53448",
+    "start_time": "2026-11-01T00:27:28.126000",
+    "end_time": "2026-11-01T00:27:30.675000",
+    "git_rev": "dabe76541877b7254c22527f5774b37597513dc5",
     "git_dirty": false,
-    "dvc_lock_hash": "sha256:4224bdaeeb448192976fd69a05d21f14d1b10bdf7681a010e8d57cc023e2281f",
-    "calkit_version": "0.50.1.dev13+gbe56c66d",
-    "calkit_git_rev": "be56c66d622c5e78d3de3949bcefc3a812b53448",
+    "dvc_lock_hash": "sha256:227416093846e52dc083bd4de690033e6b111fb96ba191a27fe450e3818c5304",
+    "calkit_version": "0.50.4.dev17+gdabe7654",
+    "calkit_git_rev": "dabe76541877b7254c22527f5774b37597513dc5",
     "system": {
       "machine_id": "680295DC-2853-59C0-82C9-87907FA3FEDB",
       "os": "Darwin",
@@ -188,14 +207,14 @@
     }
   },
   "traction": {
-    "start_time": "2026-10-28T00:26:11.318000",
-    "end_time": "2026-10-28T00:26:18.709000",
+    "start_time": "2026-11-01T00:27:27.007000",
+    "end_time": "2026-11-01T00:27:28.126000",
     "environment": "dev",
-    "git_rev": "be56c66d622c5e78d3de3949bcefc3a812b53448",
+    "git_rev": "dabe76541877b7254c22527f5774b37597513dc5",
     "git_dirty": false,
-    "dvc_lock_hash": "sha256:dc5da458da737894206f5a137686db04be6464da6053ad475344a37d41deea89",
-    "calkit_version": "0.50.1.dev13+gbe56c66d",
-    "calkit_git_rev": "be56c66d622c5e78d3de3949bcefc3a812b53448",
+    "dvc_lock_hash": "sha256:3934588a690c512a0c1a3f184e134c555f6e245ebd951fdad1e926af877123fb",
+    "calkit_version": "0.50.4.dev17+gdabe7654",
+    "calkit_git_rev": "dabe76541877b7254c22527f5774b37597513dc5",
     "system": {
       "machine_id": "680295DC-2853-59C0-82C9-87907FA3FEDB",
       "os": "Darwin",

{calkit_python-0.50.2 → calkit_python-0.50.4}/.gitignore

@@ -29,3 +29,5 @@ CLAUDE.md
 # >>> calkit markdown derived files (managed by calkit) >>>
 /.calkit/markdown/
 # <<< calkit markdown derived files <<<
+
+docs/one-pager/texgyreheros-regular.otf

{calkit_python-0.50.2 → calkit_python-0.50.4}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.5
 Name: calkit-python
-Version: 0.50.2
+Version: 0.50.4
 Summary: Reproducibility simplified.
 Project-URL: Homepage, https://calkit.org
 Project-URL: Issues, https://github.com/calkit/calkit/issues
@@ -312,6 +312,9 @@ it upgrades itself in the background,
 so your next command runs on the new version
 and starts by telling you which version that is.
 Otherwise, it tells you a new version is available.
+While [Windows Smart App Control](#windows-smart-app-control) is on,
+it only tells you,
+since Smart App Control could block files an upgrade brings in.
 
 To be told about new versions but not upgrade automatically, run:
 
@@ -420,6 +423,58 @@ Download the executable from the latest
 
 ![Calkit Assistant](https://github.com/calkit/calkit/blob/main/assistant/resources/screenshot.png?raw=true)
 
+### Windows Smart App Control
+
+Smart App Control is a Windows 11 security feature
+that blocks programs and libraries it can't verify,
+either by a trusted signature
+or by Microsoft's cloud-based reputation service.
+Many of the files Calkit and Python environments rely on aren't signed,
+e.g., the `calkit.exe` launcher uv creates,
+the Python interpreters uv downloads,
+and compiled modules in packages like pandas or h5py,
+so Smart App Control may block them.
+Since its decisions come from a cloud service,
+a file that ran yesterday can be blocked today.
+
+Signs that Smart App Control blocked something include:
+
+- A "Part of this app has been blocked" notification from Windows Security,
+  e.g., when VS Code starts Calkit.
+- uv reporting that querying Python failed with exit status `0xc0e90002`.
+- Python failing to import a compiled module with
+  `An Application Control policy has blocked this file`.
+
+Calkit links here when it sees one of these,
+or when an environment fails to build while Smart App Control is on.
+To see whether it's on, open Windows Security
+and go to **App & browser control** > **Smart App Control settings**.
+It only blocks files when set to **On**, not in **Evaluation** mode.
+
+To get Calkit running again,
+uninstall and reinstall it,
+since `uv tool install --reinstall` can fail on the blocked Python
+before it gets to reinstalling it:
+
+```sh
+uv tool uninstall calkit-python
+uv tool install calkit-python
+```
+
+To rebuild a project environment with a blocked file, run:
+
+```sh
+calkit check env -n {environment name} --force
+```
+
+If blocks keep coming back,
+turn Smart App Control off in the same settings page.
+Depending on your version of Windows,
+you may not be able to turn it back on without resetting Windows.
+On a computer your organization manages,
+an App Control policy set by your IT department can cause the same errors,
+so ask them to allow the files instead.
+
 <!-- END INCLUDE -->
 
 ## Quickstart

{calkit_python-0.50.2 → calkit_python-0.50.4}/README.md

@@ -246,6 +246,9 @@ it upgrades itself in the background,
 so your next command runs on the new version
 and starts by telling you which version that is.
 Otherwise, it tells you a new version is available.
+While [Windows Smart App Control](#windows-smart-app-control) is on,
+it only tells you,
+since Smart App Control could block files an upgrade brings in.
 
 To be told about new versions but not upgrade automatically, run:
 
@@ -354,6 +357,58 @@ Download the executable from the latest
 
 ![Calkit Assistant](https://github.com/calkit/calkit/blob/main/assistant/resources/screenshot.png?raw=true)
 
+### Windows Smart App Control
+
+Smart App Control is a Windows 11 security feature
+that blocks programs and libraries it can't verify,
+either by a trusted signature
+or by Microsoft's cloud-based reputation service.
+Many of the files Calkit and Python environments rely on aren't signed,
+e.g., the `calkit.exe` launcher uv creates,
+the Python interpreters uv downloads,
+and compiled modules in packages like pandas or h5py,
+so Smart App Control may block them.
+Since its decisions come from a cloud service,
+a file that ran yesterday can be blocked today.
+
+Signs that Smart App Control blocked something include:
+
+- A "Part of this app has been blocked" notification from Windows Security,
+  e.g., when VS Code starts Calkit.
+- uv reporting that querying Python failed with exit status `0xc0e90002`.
+- Python failing to import a compiled module with
+  `An Application Control policy has blocked this file`.
+
+Calkit links here when it sees one of these,
+or when an environment fails to build while Smart App Control is on.
+To see whether it's on, open Windows Security
+and go to **App & browser control** > **Smart App Control settings**.
+It only blocks files when set to **On**, not in **Evaluation** mode.
+
+To get Calkit running again,
+uninstall and reinstall it,
+since `uv tool install --reinstall` can fail on the blocked Python
+before it gets to reinstalling it:
+
+```sh
+uv tool uninstall calkit-python
+uv tool install calkit-python
+```
+
+To rebuild a project environment with a blocked file, run:
+
+```sh
+calkit check env -n {environment name} --force
+```
+
+If blocks keep coming back,
+turn Smart App Control off in the same settings page.
+Depending on your version of Windows,
+you may not be able to turn it back on without resetting Windows.
+On a computer your organization manages,
+an App Control policy set by your IT department can cause the same errors,
+so ask them to allow the files instead.
+
 <!-- END INCLUDE -->
 
 ## Quickstart

{calkit_python-0.50.2 → calkit_python-0.50.4}/browser-ext/README.md

@@ -154,7 +154,8 @@ popup.html             Toolbar popup page, built to dist/popup.html
 options.html           Options page, built to dist/options.html
 src/background/        Service worker: auth, API calls, message routing
 src/content/           One content script per site (github, overleaf,
-                       references)
+                       references), plus overleaf-editor, which runs in
+                       Overleaf's own world to mark problems in its editor
 src/core/              Hub config, storage, API client, page detection, UI
 src/popup/             Popup script and shared page styles
 src/options/           Options script

{calkit_python-0.50.2 → calkit_python-0.50.4}/browser-ext/public/manifest.json

@@ -51,6 +51,15 @@
       "js": ["content/overleaf.js"],
       "run_at": "document_idle"
     },
+    {
+      "matches": [
+        "https://www.overleaf.com/project/*",
+        "https://overleaf.com/project/*"
+      ],
+      "js": ["content/overleaf-editor.js"],
+      "run_at": "document_start",
+      "world": "MAIN"
+    },
     {
       "matches": [
         "https://arxiv.org/*",

{calkit_python-0.50.2 → calkit_python-0.50.4}/browser-ext/scripts/build-content.mjs

@@ -2,7 +2,7 @@ import { build } from "vite";
 
 // One IIFE bundle per content script. Rollup can't code-split an IIFE, so
 // these can't share a single multi-entry build.
-const entries = ["github", "overleaf", "references"];
+const entries = ["github", "overleaf", "overleaf-editor", "references"];
 
 for (const entry of entries) {
   process.env.CONTENT_ENTRY = entry;

{calkit_python-0.50.2 → calkit_python-0.50.4}/browser-ext/scripts/watch.mjs

@@ -1,6 +1,6 @@
 import { build } from "vite";
 
-// Rebuild on save. Four separate builds, for the same reason the one-shot
+// Rebuild on save. Five separate builds, for the same reason the one-shot
 // build has them: the pages and the service worker are ES modules built
 // together, and each content script is its own IIFE because Rollup can't
 // code-split one.
@@ -8,7 +8,7 @@ import { build } from "vite";
 // Chrome still has to be told to reload the extension. A content script is
 // read from disk when a page loads, and the service worker when it starts,
 // so a rebuilt file doesn't reach a tab that's already open.
-const entries = ["github", "overleaf", "references"];
+const entries = ["github", "overleaf", "overleaf-editor", "references"];
 
 console.log("Watching for changes; reload the extension in Chrome to pick");
 console.log("them up (chrome://extensions).");

{calkit_python-0.50.2 → calkit_python-0.50.4}/browser-ext/src/background/index.ts

@@ -19,17 +19,22 @@ import type {
   ContentsItem,
   DvcOutput,
   TextDiff,
-  Figure,
+  FiguresPage,
   GithubRepo,
+  ExportStage,
   OverleafLookup,
   OverleafSyncResponse,
   OverleafSyncStatus,
   ProjectPublic,
   ProjectsPublic,
+  Provenance,
   PullRequestRefs,
   ReferenceNote,
   ReferenceSearchMatch,
   References,
+  Result,
+  StageFromScriptOrNotebookResponse,
+  Table,
 } from "../core/types";
 
 function projectPath(owner: string, project: string): string {
@@ -221,9 +226,85 @@ async function handle(message: Request): Promise<unknown> {
           hub: hubFor(message),
         },
       );
-    case "project.figures":
-      return request<Figure[]>(
-        `${projectPath(message.owner, message.project)}/figures`,
+    case "project.contentPaths":
+      return request<string[]>(
+        `${projectPath(message.owner, message.project)}/contents-paths`,
+      );
+    case "project.figures": {
+      // The hub pages at most 100 figures, so gather paths and titles only
+      const items: FiguresPage["items"] = [];
+      let total = 0;
+      do {
+        const page = await request<FiguresPage>(
+          `${projectPath(message.owner, message.project)}/figures`,
+          {
+            query: {
+              limit: 100,
+              offset: items.length,
+              include_content: false,
+            },
+          },
+        );
+        items.push(...page.items);
+        total = page.items.length ? page.total : items.length;
+      } while (items.length < total);
+      return { items, total };
+    }
+    case "project.tables":
+      return request<Table[]>(
+        `${projectPath(message.owner, message.project)}/tables`,
+      );
+    case "project.results":
+      return request<Result[]>(
+        `${projectPath(message.owner, message.project)}/results`,
+      );
+    case "project.provenance":
+      return request<Provenance>(
+        `${projectPath(message.owner, message.project)}/provenance`,
+        { query: { path: message.path, key: message.key } },
+      );
+    case "project.stageFromScriptOrNotebook":
+      return request<StageFromScriptOrNotebookResponse>(
+        `${projectPath(message.owner, message.project)}` +
+          "/pipeline/stages/from-script-or-notebook",
+        {
+          method: "POST",
+          body: {
+            script_path: message.scriptPath,
+            content: message.content,
+            shows: message.shows,
+            produces: message.produces,
+            save: message.save ?? false,
+          },
+        },
+      );
+    case "project.recordOrigin":
+      // Recorded as a misc artifact, which the hub only takes for a path
+      // nothing else declares
+      return request<{ path: string }>(
+        `${projectPath(message.owner, message.project)}/misc`,
+        {
+          method: "POST",
+          body: {
+            path: message.path,
+            imported_from: message.importedFrom,
+            created_by: message.createdBy,
+            message: `Record where ${message.path} came from`,
+          },
+        },
+      );
+    case "project.addExportStage":
+      return request<ExportStage>(
+        `${projectPath(message.owner, message.project)}/pipeline/stages/export`,
+        {
+          method: "POST",
+          body: {
+            source: message.source,
+            output: message.output,
+            app: message.app || null,
+            files: message.files ?? [],
+          },
+        },
       );
     case "content.imageDataUrl":
       return fetchDataUrl(message.url, { imageOnly: true });