calkit-python 0.47.3__tar.gz → 0.47.5__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (1252) hide show
  1. calkit_python-0.47.5/AGENTS.md +79 -0
  2. calkit_python-0.47.5/CONTRIBUTING.md +152 -0
  3. calkit_python-0.47.5/Makefile +155 -0
  4. calkit_python-0.47.5/PKG-INFO +515 -0
  5. calkit_python-0.47.5/README.md +453 -0
  6. calkit_python-0.47.5/actions/run/action.yml +386 -0
  7. calkit_python-0.47.5/assistant/.gitignore +13 -0
  8. calkit_python-0.47.5/assistant/Makefile +31 -0
  9. calkit_python-0.47.5/assistant/README.md +11 -0
  10. calkit_python-0.47.5/assistant/main.py +1887 -0
  11. calkit_python-0.47.5/assistant/pyproject.toml +32 -0
  12. calkit_python-0.47.5/assistant/resources/icon.ico +0 -0
  13. calkit_python-0.47.5/assistant/resources/screenshot.png +0 -0
  14. calkit_python-0.47.5/assistant/tests/test_main.py +100 -0
  15. calkit_python-0.47.5/assistant/uv.lock +650 -0
  16. calkit_python-0.47.5/calkit/cli/latex.py +1409 -0
  17. calkit_python-0.47.5/calkit/cli/list.py +618 -0
  18. calkit_python-0.47.5/calkit/cli/main/core.py +4400 -0
  19. calkit_python-0.47.5/calkit/cli/new.py +4379 -0
  20. calkit_python-0.47.5/calkit/config.py +598 -0
  21. calkit_python-0.47.5/calkit/core.py +1467 -0
  22. calkit_python-0.47.5/calkit/environments.py +2725 -0
  23. calkit_python-0.47.5/calkit/git.py +627 -0
  24. calkit_python-0.47.5/calkit/install.py +467 -0
  25. calkit_python-0.47.5/calkit/labextension/package.json +211 -0
  26. calkit_python-0.47.5/calkit/labextension/schemas/calkit/package.json.orig +206 -0
  27. calkit_python-0.47.5/calkit/labextension/static/506.c34b070098184e33.js +156 -0
  28. calkit_python-0.47.5/calkit/labextension/static/616.528427eb54a4a0c0.js +1 -0
  29. calkit_python-0.47.5/calkit/labextension/static/740.6bf87276e9e5788a.js +1 -0
  30. calkit_python-0.47.5/calkit/labextension/static/899.f9b9f9bf705a6493.js +2632 -0
  31. calkit_python-0.47.5/calkit/labextension/static/935.46ecc6bf99aa593a.js +1 -0
  32. calkit_python-0.47.5/calkit/labextension/static/remoteEntry.109a3a8379365e59.js +1 -0
  33. calkit_python-0.47.5/calkit/labextension/static/style.js +4 -0
  34. calkit_python-0.47.5/calkit/latex.py +751 -0
  35. calkit_python-0.47.5/calkit/models/pipeline.py +2404 -0
  36. calkit_python-0.47.5/calkit/pipeline.py +2410 -0
  37. calkit_python-0.47.5/calkit/resources/devcontainer/base.json +25 -0
  38. calkit_python-0.47.5/calkit/resources/devcontainer/devcontainer.json +58 -0
  39. calkit_python-0.47.5/calkit/templates/core.py +260 -0
  40. calkit_python-0.47.5/calkit/tests/cli/test_latex.py +618 -0
  41. calkit_python-0.47.5/calkit/tests/cli/test_list.py +279 -0
  42. calkit_python-0.47.5/calkit/tests/cli/test_new.py +2297 -0
  43. calkit_python-0.47.5/calkit/tests/models/test_pipeline.py +952 -0
  44. calkit_python-0.47.5/calkit/tests/test_config.py +354 -0
  45. calkit_python-0.47.5/calkit/tests/test_core.py +378 -0
  46. calkit_python-0.47.5/calkit/tests/test_install.py +347 -0
  47. calkit_python-0.47.5/calkit/tests/test_pipeline.py +3553 -0
  48. calkit_python-0.47.5/calkit/tests/test_templates.py +64 -0
  49. calkit_python-0.47.5/docs/browser-ext/index.md +128 -0
  50. calkit_python-0.47.5/docs/browser-ext/privacy.md +6 -0
  51. calkit_python-0.47.5/docs/cli-reference.md +3966 -0
  52. calkit_python-0.47.5/docs/img/pipeline.png +0 -0
  53. calkit_python-0.47.5/docs/index.md +154 -0
  54. calkit_python-0.47.5/docs/installation.md +132 -0
  55. calkit_python-0.47.5/docs/latex.md +276 -0
  56. calkit_python-0.47.5/docs/pipeline/index.md +767 -0
  57. calkit_python-0.47.5/docs/privacy.md +214 -0
  58. calkit_python-0.47.5/docs/quickstart.md +113 -0
  59. calkit_python-0.47.5/docs/reproducibility.md +133 -0
  60. calkit_python-0.47.5/docs/requirements.md +346 -0
  61. calkit_python-0.47.5/docs/schemas/calkit.json +9493 -0
  62. calkit_python-0.47.5/examples/markdown/.calkit/envs/py/.python-version +1 -0
  63. calkit_python-0.47.5/hub/.env.example +121 -0
  64. calkit_python-0.47.5/hub/Makefile +83 -0
  65. calkit_python-0.47.5/hub/backend/app/alembic/versions/c4e1d7a92b35_add_analytics_consent_to_user.py +25 -0
  66. calkit_python-0.47.5/hub/backend/app/api/routes/login.py +923 -0
  67. calkit_python-0.47.5/hub/backend/app/api/routes/misc.py +624 -0
  68. calkit_python-0.47.5/hub/backend/app/api/routes/projects/core.py +11265 -0
  69. calkit_python-0.47.5/hub/backend/app/api/routes/projects/figures.py +410 -0
  70. calkit_python-0.47.5/hub/backend/app/api/routes/projects/pipeline.py +300 -0
  71. calkit_python-0.47.5/hub/backend/app/api/routes/projects/releases.py +2192 -0
  72. calkit_python-0.47.5/hub/backend/app/api/routes/users.py +1240 -0
  73. calkit_python-0.47.5/hub/backend/app/git.py +2240 -0
  74. calkit_python-0.47.5/hub/backend/app/index.py +86 -0
  75. calkit_python-0.47.5/hub/backend/app/mixpanel.py +278 -0
  76. calkit_python-0.47.5/hub/backend/app/models/core.py +1701 -0
  77. calkit_python-0.47.5/hub/backend/app/projects.py +1597 -0
  78. calkit_python-0.47.5/hub/backend/app/tests/api/routes/projects/test_core.py +4981 -0
  79. calkit_python-0.47.5/hub/backend/app/tests/api/routes/projects/test_datasets.py +485 -0
  80. calkit_python-0.47.5/hub/backend/app/tests/api/routes/projects/test_figures.py +447 -0
  81. calkit_python-0.47.5/hub/backend/app/tests/api/routes/projects/test_misc.py +172 -0
  82. calkit_python-0.47.5/hub/backend/app/tests/api/routes/projects/test_pipeline.py +278 -0
  83. calkit_python-0.47.5/hub/backend/app/tests/api/routes/projects/test_publications.py +404 -0
  84. calkit_python-0.47.5/hub/backend/app/tests/api/routes/projects/test_templates.py +51 -0
  85. calkit_python-0.47.5/hub/backend/app/tests/api/routes/test_login.py +773 -0
  86. calkit_python-0.47.5/hub/backend/app/tests/api/routes/test_misc.py +179 -0
  87. calkit_python-0.47.5/hub/backend/app/tests/api/routes/test_users.py +1218 -0
  88. calkit_python-0.47.5/hub/backend/app/tests/conftest.py +88 -0
  89. calkit_python-0.47.5/hub/backend/app/tests/test_git.py +1093 -0
  90. calkit_python-0.47.5/hub/backend/app/tests/test_index.py +110 -0
  91. calkit_python-0.47.5/hub/backend/app/tests/test_mixpanel.py +30 -0
  92. calkit_python-0.47.5/hub/backend/app/tests/test_projects.py +991 -0
  93. calkit_python-0.47.5/hub/backend/app/users.py +987 -0
  94. calkit_python-0.47.5/hub/backend/app/warm.py +268 -0
  95. calkit_python-0.47.5/hub/backend/scripts/delete-user.py +101 -0
  96. calkit_python-0.47.5/hub/docker-compose.override.yml +206 -0
  97. calkit_python-0.47.5/hub/frontend/src/client/index.ts +1228 -0
  98. calkit_python-0.47.5/hub/frontend/src/client/schemas.gen.ts +11545 -0
  99. calkit_python-0.47.5/hub/frontend/src/client/sdk.gen.ts +8918 -0
  100. calkit_python-0.47.5/hub/frontend/src/client/types.gen.ts +14132 -0
  101. calkit_python-0.47.5/hub/frontend/src/components/Admin/AddUser.tsx +192 -0
  102. calkit_python-0.47.5/hub/frontend/src/components/Admin/EditUser.tsx +186 -0
  103. calkit_python-0.47.5/hub/frontend/src/components/Common/ArtifactCompareModal.tsx +1158 -0
  104. calkit_python-0.47.5/hub/frontend/src/components/Common/ConnectGitHubPrompt.tsx +41 -0
  105. calkit_python-0.47.5/hub/frontend/src/components/Common/DeleteAlert.tsx +158 -0
  106. calkit_python-0.47.5/hub/frontend/src/components/Common/DiscardChangesDialog.tsx +63 -0
  107. calkit_python-0.47.5/hub/frontend/src/components/Common/FilterableSelect.tsx +186 -0
  108. calkit_python-0.47.5/hub/frontend/src/components/Common/HelpFeedback.tsx +185 -0
  109. calkit_python-0.47.5/hub/frontend/src/components/Common/OAuthButtons.tsx +77 -0
  110. calkit_python-0.47.5/hub/frontend/src/components/Common/ProjectCommandPalette.tsx +185 -0
  111. calkit_python-0.47.5/hub/frontend/src/components/Common/SidebarItems.tsx +170 -0
  112. calkit_python-0.47.5/hub/frontend/src/components/Common/TexText.test.tsx +25 -0
  113. calkit_python-0.47.5/hub/frontend/src/components/Common/TexText.tsx +86 -0
  114. calkit_python-0.47.5/hub/frontend/src/components/Common/Topbar.tsx +283 -0
  115. calkit_python-0.47.5/hub/frontend/src/components/Datasets/BrowseDatasets.tsx +231 -0
  116. calkit_python-0.47.5/hub/frontend/src/components/Datasets/DatasetViewer.tsx +630 -0
  117. calkit_python-0.47.5/hub/frontend/src/components/Datasets/NewDataset.tsx +663 -0
  118. calkit_python-0.47.5/hub/frontend/src/components/Environments/NewEnvironment.tsx +411 -0
  119. calkit_python-0.47.5/hub/frontend/src/components/Environments/ViewEnvironment.tsx +139 -0
  120. calkit_python-0.47.5/hub/frontend/src/components/Figures/FigureEditLauncher.tsx +152 -0
  121. calkit_python-0.47.5/hub/frontend/src/components/Figures/FigureEditor.tsx +1087 -0
  122. calkit_python-0.47.5/hub/frontend/src/components/Figures/FigureFromExisting.tsx +162 -0
  123. calkit_python-0.47.5/hub/frontend/src/components/Figures/UploadFigure.tsx +290 -0
  124. calkit_python-0.47.5/hub/frontend/src/components/Files/EditFileInfo.tsx +220 -0
  125. calkit_python-0.47.5/hub/frontend/src/components/Files/FileEditorModal.tsx +337 -0
  126. calkit_python-0.47.5/hub/frontend/src/components/Files/UploadFile.tsx +147 -0
  127. calkit_python-0.47.5/hub/frontend/src/components/Local/AddPath.tsx +148 -0
  128. calkit_python-0.47.5/hub/frontend/src/components/Local/DiscardChanges.tsx +93 -0
  129. calkit_python-0.47.5/hub/frontend/src/components/Local/IgnorePath.tsx +143 -0
  130. calkit_python-0.47.5/hub/frontend/src/components/Local/NewStage.tsx +412 -0
  131. calkit_python-0.47.5/hub/frontend/src/components/Local/SaveFiles.tsx +183 -0
  132. calkit_python-0.47.5/hub/frontend/src/components/Notebooks/NotebookRunner.tsx +650 -0
  133. calkit_python-0.47.5/hub/frontend/src/components/Onboarding/AccountSetupCard.tsx +161 -0
  134. calkit_python-0.47.5/hub/frontend/src/components/Onboarding/ChecklistCard.tsx +238 -0
  135. calkit_python-0.47.5/hub/frontend/src/components/Onboarding/FeaturedProjects.tsx +88 -0
  136. calkit_python-0.47.5/hub/frontend/src/components/Onboarding/ProjectChecklist.tsx +282 -0
  137. calkit_python-0.47.5/hub/frontend/src/components/Onboarding/StartPaths.tsx +134 -0
  138. calkit_python-0.47.5/hub/frontend/src/components/Orgs/AddMember.tsx +113 -0
  139. calkit_python-0.47.5/hub/frontend/src/components/Orgs/NewOrg.tsx +150 -0
  140. calkit_python-0.47.5/hub/frontend/src/components/Pipeline/PipelineEditorModal.tsx +255 -0
  141. calkit_python-0.47.5/hub/frontend/src/components/Pipeline/StageEditorModal.tsx +378 -0
  142. calkit_python-0.47.5/hub/frontend/src/components/Projects/AddCollaborator.tsx +145 -0
  143. calkit_python-0.47.5/hub/frontend/src/components/Projects/CloneProject.tsx +58 -0
  144. calkit_python-0.47.5/hub/frontend/src/components/Projects/CreateIssue.tsx +149 -0
  145. calkit_python-0.47.5/hub/frontend/src/components/Projects/CreateQuestion.tsx +128 -0
  146. calkit_python-0.47.5/hub/frontend/src/components/Projects/EditProject.tsx +131 -0
  147. calkit_python-0.47.5/hub/frontend/src/components/Projects/EditQuestion.tsx +433 -0
  148. calkit_python-0.47.5/hub/frontend/src/components/Projects/InviteLinks.tsx +429 -0
  149. calkit_python-0.47.5/hub/frontend/src/components/Projects/MakeProjectPublic.tsx +109 -0
  150. calkit_python-0.47.5/hub/frontend/src/components/Projects/NewProjectModal.tsx +633 -0
  151. calkit_python-0.47.5/hub/frontend/src/components/Projects/ProjectStatus.tsx +149 -0
  152. calkit_python-0.47.5/hub/frontend/src/components/Projects/QuestionModal.tsx +898 -0
  153. calkit_python-0.47.5/hub/frontend/src/components/Publications/ImportOverleaf.tsx +649 -0
  154. calkit_python-0.47.5/hub/frontend/src/components/Publications/LatexEditor.tsx +1121 -0
  155. calkit_python-0.47.5/hub/frontend/src/components/Publications/NewPublication.tsx +339 -0
  156. calkit_python-0.47.5/hub/frontend/src/components/Publications/PublicationComponents.tsx +675 -0
  157. calkit_python-0.47.5/hub/frontend/src/components/References/DeleteReferenceItemDialog.tsx +94 -0
  158. calkit_python-0.47.5/hub/frontend/src/components/References/DeleteReferencesCollectionDialog.tsx +96 -0
  159. calkit_python-0.47.5/hub/frontend/src/components/References/EditReferenceItemModal.tsx +273 -0
  160. calkit_python-0.47.5/hub/frontend/src/components/References/FileViewModal.tsx +44 -0
  161. calkit_python-0.47.5/hub/frontend/src/components/References/ImportFromZoteroModal.tsx +362 -0
  162. calkit_python-0.47.5/hub/frontend/src/components/References/LabelExistingReferences.tsx +136 -0
  163. calkit_python-0.47.5/hub/frontend/src/components/References/NewReferencesCollection.tsx +126 -0
  164. calkit_python-0.47.5/hub/frontend/src/components/References/ReferencesInfoPanel.tsx +300 -0
  165. calkit_python-0.47.5/hub/frontend/src/components/Releases/NewRelease.tsx +675 -0
  166. calkit_python-0.47.5/hub/frontend/src/components/Releases/ReleasesTable.tsx +534 -0
  167. calkit_python-0.47.5/hub/frontend/src/components/Releases/ShareDialog.tsx +338 -0
  168. calkit_python-0.47.5/hub/frontend/src/components/Tables/TableView.test.tsx +145 -0
  169. calkit_python-0.47.5/hub/frontend/src/components/Tables/TableView.tsx +584 -0
  170. calkit_python-0.47.5/hub/frontend/src/components/UserSettings/Appearance.tsx +38 -0
  171. calkit_python-0.47.5/hub/frontend/src/components/UserSettings/ChangePassword.tsx +126 -0
  172. calkit_python-0.47.5/hub/frontend/src/components/UserSettings/ConnectedAccounts.tsx +352 -0
  173. calkit_python-0.47.5/hub/frontend/src/components/UserSettings/DeleteAccount.tsx +35 -0
  174. calkit_python-0.47.5/hub/frontend/src/components/UserSettings/DeleteConfirmation.tsx +103 -0
  175. calkit_python-0.47.5/hub/frontend/src/components/UserSettings/NewToken.tsx +163 -0
  176. calkit_python-0.47.5/hub/frontend/src/components/UserSettings/PickSubscription.tsx +543 -0
  177. calkit_python-0.47.5/hub/frontend/src/components/UserSettings/Privacy.tsx +64 -0
  178. calkit_python-0.47.5/hub/frontend/src/components/UserSettings/Subscription.tsx +188 -0
  179. calkit_python-0.47.5/hub/frontend/src/components/UserSettings/UpdateOverleafToken.tsx +125 -0
  180. calkit_python-0.47.5/hub/frontend/src/components/UserSettings/UserTokens.tsx +118 -0
  181. calkit_python-0.47.5/hub/frontend/src/hooks/useAuth.ts +221 -0
  182. calkit_python-0.47.5/hub/frontend/src/lib/analytics.test.ts +209 -0
  183. calkit_python-0.47.5/hub/frontend/src/lib/analytics.ts +96 -0
  184. calkit_python-0.47.5/hub/frontend/src/lib/api.ts +86 -0
  185. calkit_python-0.47.5/hub/frontend/src/lib/auth.ts +222 -0
  186. calkit_python-0.47.5/hub/frontend/src/lib/github.ts +77 -0
  187. calkit_python-0.47.5/hub/frontend/src/lib/onboarding.test.ts +338 -0
  188. calkit_python-0.47.5/hub/frontend/src/lib/onboarding.ts +282 -0
  189. calkit_python-0.47.5/hub/frontend/src/main.tsx +70 -0
  190. calkit_python-0.47.5/hub/frontend/src/routes/__root.tsx +120 -0
  191. calkit_python-0.47.5/hub/frontend/src/routes/_layout/$accountName/$projectName/_layout/datasets.tsx +526 -0
  192. calkit_python-0.47.5/hub/frontend/src/routes/_layout/$accountName/$projectName/_layout/figures.tsx +759 -0
  193. calkit_python-0.47.5/hub/frontend/src/routes/_layout/$accountName/$projectName/_layout/history.tsx +728 -0
  194. calkit_python-0.47.5/hub/frontend/src/routes/_layout/$accountName/$projectName/_layout/pipeline.tsx +611 -0
  195. calkit_python-0.47.5/hub/frontend/src/routes/_layout/$accountName/$projectName/_layout/publications.tsx +761 -0
  196. calkit_python-0.47.5/hub/frontend/src/routes/_layout/$accountName/$projectName/_layout/tables.tsx +368 -0
  197. calkit_python-0.47.5/hub/frontend/src/routes/_layout/$accountName/$projectName/_layout.tsx +663 -0
  198. calkit_python-0.47.5/hub/frontend/src/routes/_layout/$accountName/$projectName/releases/$releaseName.tsx +68 -0
  199. calkit_python-0.47.5/hub/frontend/src/routes/_layout/index.tsx +471 -0
  200. calkit_python-0.47.5/hub/frontend/src/routes/_layout/new.tsx +53 -0
  201. calkit_python-0.47.5/hub/frontend/src/routes/_layout/settings.tsx +112 -0
  202. calkit_python-0.47.5/hub/frontend/src/routes/_layout.tsx +157 -0
  203. calkit_python-0.47.5/hub/frontend/src/routes/auth/google.tsx +115 -0
  204. calkit_python-0.47.5/hub/frontend/src/routes/auth/zenodo.tsx +91 -0
  205. calkit_python-0.47.5/hub/frontend/src/routes/login/index.tsx +306 -0
  206. calkit_python-0.47.5/hub/frontend/src/routes/signup.tsx +13 -0
  207. calkit_python-0.47.5/hub/frontend/tests/auth.setup.ts +41 -0
  208. calkit_python-0.47.5/jupyterlab-ext/package.json +206 -0
  209. calkit_python-0.47.5/jupyterlab-ext/yarn.lock +11057 -0
  210. calkit_python-0.47.5/mkdocs.yml +123 -0
  211. calkit_python-0.47.5/pyproject.toml +276 -0
  212. calkit_python-0.47.5/scripts/list-changes.py +116 -0
  213. calkit_python-0.47.5/scripts/sync-docs.py +301 -0
  214. calkit_python-0.47.5/uv.lock +9910 -0
  215. calkit_python-0.47.5/vscode-ext/schemas/calkit.json +9493 -0
  216. calkit_python-0.47.3/AGENTS.md +0 -73
  217. calkit_python-0.47.3/CONTRIBUTING.md +0 -140
  218. calkit_python-0.47.3/Makefile +0 -143
  219. calkit_python-0.47.3/PKG-INFO +0 -414
  220. calkit_python-0.47.3/README.md +0 -352
  221. calkit_python-0.47.3/actions/run/action.yml +0 -368
  222. calkit_python-0.47.3/calkit/cli/latex.py +0 -1079
  223. calkit_python-0.47.3/calkit/cli/list.py +0 -578
  224. calkit_python-0.47.3/calkit/cli/main/core.py +0 -4392
  225. calkit_python-0.47.3/calkit/cli/new.py +0 -4370
  226. calkit_python-0.47.3/calkit/config.py +0 -558
  227. calkit_python-0.47.3/calkit/core.py +0 -1453
  228. calkit_python-0.47.3/calkit/environments.py +0 -2713
  229. calkit_python-0.47.3/calkit/git.py +0 -648
  230. calkit_python-0.47.3/calkit/install.py +0 -229
  231. calkit_python-0.47.3/calkit/labextension/package.json +0 -211
  232. calkit_python-0.47.3/calkit/labextension/schemas/calkit/package.json.orig +0 -206
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@@ -0,0 +1,79 @@
1
+ # Agent instructions for working on Calkit
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+
3
+ ## Repo structure
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+
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+ - The main Python package/CLI lives in `calkit`
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+ - The JupyterLab extension lives in `src`
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+ - The VS Code extension lives in `vscode-ext`
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+ - The Chrome extension lives in `browser-ext`
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+ - The Calkit Assistant desktop app lives in `assistant`
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+ - GitHub Actions live in `actions`, e.g., `calkit/calkit/actions/run`
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+ - Config Calkit installs into projects, e.g., the dev container, VS Code, and
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+ GitHub Actions configs, lives in `calkit/resources`; see the README there
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+ before editing, since some of those files are generated
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+
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+ Be sure to read the `AGENTS.md` file in whatever subproject you're working on,
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+ if applicable.
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+
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+ ## Working
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+
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+ See `CONTRIBUTING.md` for tool usage, style guidelines, etc.
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+
22
+ To run tests, use `uv run pytest`.
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+
24
+ To sync the docs and format all the code, run `make format`.
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+
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+ Before finishing a change, type-check it. The CLI gate is mypy
27
+ (`uv run mypy <changed files>`, or `make check` for the full suite), and the
28
+ VS Code editor uses Pylance (Pyright). Keep new code clean under both, and do
29
+ not introduce new type errors.
30
+
31
+ Wrap prose at natural breakpoints in phrases or punctuation to keep max
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+ line length below 80 characters.
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+
34
+ In the docs, MkDocs Material admonitions (`!!! note`, `!!! tip`, etc.) must be
35
+ preceded by a `<!-- prettier-ignore -->` comment. Otherwise Prettier reformats
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+ the block and strips the 4-space indentation of the admonition body, which
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+ breaks rendering.
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+
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+ Agents should never make commits to Git unless asked to.
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+
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+ Tests belong in the test module named after the module the exercised code
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+ lives in, e.g., tests for `calkit/cli/new.py` go in
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+ `calkit/tests/cli/test_new.py`. Don't create a new test module for a feature.
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+
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+ Prefer tests that include multiple scenarios to comprehensively test
46
+ a feature in one function over many different test functions.
47
+
48
+ Do not write docstrings in test functions.
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+
50
+ Do not put blank lines inside function bodies; separate logical sections with
51
+ comments instead. This only applies to blank lines we write, not ones the
52
+ formatter inserts, e.g., ruff-format adds one after an in-function import
53
+ block. Don't hoist imports to module scope just to avoid those; imports are
54
+ kept inside functions to keep CLI startup fast.
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+
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+ For prose, only use one space after punctuation.
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+
58
+ Always put a comma after "i.e." and "e.g.".
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+
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+ Don't overzealously split up functions just because they're long.
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+ Functions should usually be used ~3 times before abstracting.
62
+ Otherwise, split up long ones into logical sections with comments.
63
+ The only exception here is if splitting up a function makes it easier to
64
+ write meaningful unit tests.
65
+ If a function is only used inside one other function, nest it inside the
66
+ caller at the top.
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+
68
+ No spaces on either side of en or em dashes used for ranges or pauses in prose,
69
+ respectively.
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+
71
+ Never create `helpers` or `utils` modules or packages--tight coupling and
72
+ low cohesion architecture.
73
+
74
+ Don't be verbose in comments. One sentence is usually fine, if anything at all.
75
+
76
+ Agents should typically not be writing prose for human consumption.
77
+ If some is needed, notify
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+ the human developer and ask them to write in a given file at a specified
79
+ line and make a commit.
@@ -0,0 +1,152 @@
1
+ # Contributing to Calkit
2
+
3
+ Thank you for considering contributing to Calkit!
4
+ We welcome contributions of all kinds, including code, documentation,
5
+ bug reports, and feature suggestions.
6
+ This guide will help you get started.
7
+
8
+ ## 🛠 How to contribute
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+
10
+ ### 1. Find an issue to work on
11
+
12
+ - Check the **[backlog](https://github.com/orgs/calkit/projects/1/views/1)**
13
+ for issues that are ready to be worked on.
14
+ - Look for issues labeled `good first issue` if you're new.
15
+ - If you have an idea, open a new issue and discuss it before coding.
16
+
17
+ ### 2. Set up your development environment
18
+
19
+ 1. [**Fork** the repository](https://github.com/calkit/calkit/fork).
20
+ 1. **Clone** your fork locally:
21
+ ```bash
22
+ git clone https://github.com/{your-username}/calkit.git
23
+ cd calkit
24
+ ```
25
+ 1. **Install system-level dependencies:**
26
+ - [Docker](https://docker.com)
27
+ - [Miniforge](https://conda-forge.org/download/)
28
+ - [uv](https://docs.astral.sh/uv/getting-started/installation/)
29
+ - [Pixi](https://pixi.sh/latest/)
30
+ 1. **Create the virtual environment:**
31
+ ```bash
32
+ uv sync --all-packages
33
+ ```
34
+ This repo is a uv workspace: the hub backend is a member, and both it
35
+ and the `calkit` package share a single `.venv` at the repo root.
36
+ Always pass `--all-packages`, since a bare `uv sync` installs only one
37
+ member and uninstalls the other's dependencies, leaving either the
38
+ `calkit` CLI or the hub backend unable to import its dependencies.
39
+ 1. **Run tests** to ensure everything is working:
40
+ ```bash
41
+ uv run pytest
42
+ ```
43
+ 1. Install the Calkit CLI in dev mode:
44
+ ```sh
45
+ uv tool install -e .
46
+ ```
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+ 1. Install the JupyterLab extension in development mode
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+ (if working on the JupyterLab extension):
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+ ```sh
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+ uv run jupyter-builder develop . --overwrite
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+ ```
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+ 1. Start the JupyterLab extension TypeScript compiler in watch mode
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+ (if working on the JupyterLab extension):
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+ ```sh
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+ make jlab-dev
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+ ```
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+ 1. Start JupyterLab:
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+ ```sh
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+ uv run jupyter lab
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+ ```
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+ 1. **Set up pre-commit hooks** to auto-enforce code style standards:
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+ ```bash
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+ uv tool install prek
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+ prek install
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+ ```
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+ This will run automated checks before each commit.
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+
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+ ### 3. Make your changes
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+
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+ - Create a new branch:
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+ ```bash
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+ git checkout -b your-feature-name
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+ ```
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+ - Fix automatically-checked formatting issues:
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+ ```bash
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+ make format
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+ ```
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+ - Follow style guidelines not automatically checked:
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+ - No blank lines inside functions/methods
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+ - Type hints required for all functions
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+ - NumPy-style docstrings
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+ - Commit your changes
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+ (use the imperative mood and capitalize the first letter,
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+ but don't use punctuation):
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+ ```bash
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+ git add .
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+ git commit -m "Short description of your change"
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+ ```
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+ - Push your branch:
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+ ```bash
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+ git push origin your-feature-name -u
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+ ```
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+
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+ ### 4. Submit a pull request (PR)
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+
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+ - Open a **Pull request** on GitHub.
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+ - Link the PR to the issue it resolves by adding "resolves #{issue number}"
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+ to the description.
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+ - Wait for a review and make necessary changes.
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+
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+ ## Releasing the browser extension
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+
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+ Publishing a GitHub release tagged `browser-ext/vX.Y.Z` builds and tests the
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+ extension, stamps that version into `manifest.json` and `package.json`,
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+ strips source maps, and attaches a store-ready zip to the release.
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+ The version comes from the tag because the Chrome Web Store rejects an
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+ upload whose manifest version isn't higher than the last one, and a version
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+ kept in sync by hand eventually isn't.
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+ Uncheck "set as the latest release" for these, since they aren't
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+ calkit-python releases.
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+
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+ The same workflow uploads to the Chrome Web Store once the
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+ `CHROME_EXTENSION_ID` repository variable is set, using the
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+ `CHROME_CLIENT_ID`, `CHROME_CLIENT_SECRET`, and `CHROME_REFRESH_TOKEN`
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+ secrets (an OAuth client for the Web Store API, authorized for the
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+ publishing account).
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+ Until that variable exists the upload step is skipped and the zip on the
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+ release is uploaded by hand.
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+
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+ `make browser-ext` builds and packages the same zip locally.
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+ The packaged manifest drops the local development hub's host permission,
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+ which is why it is built from a staged copy rather than from `dist`, the
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+ directory loaded unpacked during development.
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+ The store listing's text lives in `browser-ext/store/listing.md`, and its
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+ screenshots are generated from `docs/img/browser-ext` by
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+ `browser-ext/scripts/store-screenshots.py`.
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+
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+ ## Releasing the assistant
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+
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+ Publishing a GitHub release tagged `assistant/vX.Y.Z` builds the Windows
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+ executable with PyInstaller and attaches it to the release as
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+ `calkit-assistant-X.Y.Z-windows.exe`.
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+ As with the extensions, uncheck "set as the latest release" for these.
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+ Pull requests that touch `assistant/` run its offscreen smoke test on all
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+ three platforms and a Windows build, so a broken build is caught before a
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+ release is cut.
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+ `make assistant` runs the app locally and `make test-assistant` runs the
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+ same smoke test.
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+
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+ ## 💡 Other ways to contribute
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+
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+ - **Report bugs**: Open an issue with detailed reproduction steps.
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+ - **Improve documentation**: Help us make Calkit's docs better.
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+ - **Suggest features**: Share your ideas for improvements.
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+
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+ ## 🎉 Join the community
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+
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+ - Participate in **[GitHub Discussions](https://github.com/calkit/discussions)**.
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+ - Join our [**Discord**](https://discord.gg/m2MBC79HzD) for real-time collaboration.
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+ - Follow our updates on [**LinkedIn**](https://linkedin.com/company/calkit).
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+
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+ We appreciate your help in making Calkit better! 🚀
@@ -0,0 +1,155 @@
1
+ .PHONY: help
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+ help: ## Show this help.
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+ @uv run python -c "import re; \
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+ [[print(f'\033[36m{m[0]:<20}\033[0m {m[1]}') for m in re.findall(r'^([a-zA-Z_-]+):.*?## (.*)$$', open(makefile).read(), re.M)] for makefile in ('$(MAKEFILE_LIST)').strip().split()]"
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+
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+ .PHONY: install
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+ install: ## Create the project's virtual environment.
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+ @echo "🚀 Creating virtual environment"
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+ # --all-packages, since a bare `uv sync` would install only this
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+ # package and uninstall the hub backend's dependencies from the
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+ # workspace's single shared .venv
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+ @uv sync --all-packages
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+
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+ .PHONY: dev
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+ dev: ## Start up the hub containers for development.
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+ @$(MAKE) -C hub dev
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+
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+ .PHONY: dev-reset-user
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+ dev-reset-user: ## Reset the hub development user's data.
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+ @$(MAKE) -C hub dev-reset-user
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+
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+ .PHONY: frontend-client
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+ frontend-client: ## Regenerate the hub frontend's API client.
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+ @$(MAKE) -C hub/frontend client
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+
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+ .PHONY: format
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+ format: sync-docs sync-resources ## Automatically format files.
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+ @echo "🚀 Linting code with pre-commit"
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+ @uv run pre-commit run -a
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+
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+ .PHONY: check
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+ check: format ## Run code quality tools.
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+ @echo "🚀 Checking lock file consistency with 'pyproject.toml'"
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+ @uv lock --locked
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+ @echo "🚀 Static type checking with mypy"
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+ @uv run --all-packages mypy
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+ @echo "🚀 Checking for obsolete dependencies with deptry"
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+ @uv run deptry .
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+
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+ .PHONY: test
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+ test: ## Test the code with pytest.
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+ @echo "🚀 Testing code with pytest"
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+ @uv run pytest
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+
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+ .PHONY: test-cov
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+ test-cov: ## Test the code coverage with pytest.
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+ @echo "🚀 Testing code coverage with pytest"
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+ @uv run pytest --cov --cov-config=pyproject.toml
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+
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+ .PHONY: test-docs
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+ test-docs: sync-docs ## Test if documentation can be built without warnings or errors.
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+ @uv run mkdocs build -s
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+
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+ .PHONY: schema
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+ schema: ## Generate the published JSON schema for calkit.yaml.
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+ @echo "🚀 Generating calkit.yaml JSON schema"
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+ @uv run calkit describe schema -o docs/schemas/calkit.json
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+ @cp docs/schemas/calkit.json vscode-ext/schemas/calkit.json
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+
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+ .PHONY: sync-docs
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+ sync-docs: schema ## Sync documentation content from docs/*.md into README.md.
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+ @echo "🚀 Generating docs references"
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+ @uv run python scripts/generate-docs-references.py
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+ @echo "🚀 Syncing documentation"
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+ @uv run python scripts/sync-docs.py
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+
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+ .PHONY: unreleased
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+ unreleased: ## List each product's commits since its last release.
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+ @uv run python scripts/list-changes.py
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+
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+ .PHONY: sync-resources
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+ sync-resources: ## Regenerate the dev container spec from the VS Code config.
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+ @echo "🚀 Syncing project resources"
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+ @uv run python scripts/sync-resources.py
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+
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+ .PHONY: devcontainer-image
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+ devcontainer-image: ## Build the dev container image and smoke test it.
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+ @echo "🚀 Building the dev container image"
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+ @docker build -t calkit/devcontainer:dev calkit/resources/devcontainer
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+ @echo "🚀 Smoke testing the dev container image"
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+ @docker run --rm calkit/devcontainer:dev bash -c \
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+ "calkit --version && uv --version && pixi --version && conda --version"
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+
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+ .PHONY: docs
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+ docs: sync-docs ## Build and serve the documentation.
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+ @uv run mkdocs serve --livereload
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+
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+ .PHONY: import-profile
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+ import-profile: ## Profile the import time of the CLI.
90
+ uv run python -X importtime -m calkit --help 2> import.log && uvx tuna import.log
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+
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+ .PHONY: jlab-dev
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+ jlab-dev: ## Develop the JupyterLab extension.
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+ cd jupyterlab-ext && uv run jlpm run watch
95
+
96
+ .PHONY: jlab
97
+ jlab: ## Build the JupyterLab extension.
98
+ cd jupyterlab-ext && uv run jlpm run build:prod
99
+
100
+ .PHONY: test-jlab
101
+ test-jlab: ## Run JupyterLab extension unit tests with Jest.
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+ @echo "🚀 Running JupyterLab extension unit tests"
103
+ @cd jupyterlab-ext && uv run jlpm test
104
+
105
+ .PHONY: test-jlab-ui
106
+ test-jlab-ui: ## Run the JupyterLab UI integration tests.
107
+ @echo "🚀 Running JupyterLab UI tests with Playwright"
108
+ @cd jupyterlab-ext && uv run jlpm run build:prod
109
+ @uv run --directory=jupyterlab-ext/ui-tests jlpm install
110
+ @uv run --directory=jupyterlab-ext/ui-tests jlpm playwright install
111
+ @uv run --directory=jupyterlab-ext/ui-tests jlpm playwright test -u --reporter=list
112
+
113
+ .PHONY: browser-ext
114
+ browser-ext: ## Build the browser extension and package it as a ZIP.
115
+ @echo "🚀 Building the browser extension"
116
+ @cd browser-ext && npm ci && npm run build
117
+ @echo "📦 Packaging the browser extension ZIP"
118
+ @mkdir -p browser-ext/zip
119
+ # Packaged from a staged copy, never from dist: dist is what gets loaded
120
+ # unpacked for development, and the published manifest drops the local
121
+ # hub's host permission, which development needs.
122
+ @rm -rf browser-ext/zip/stage
123
+ @mkdir -p browser-ext/zip/stage
124
+ @cp -R browser-ext/dist/. browser-ext/zip/stage/
125
+ @cd browser-ext && node scripts/package-manifest.mjs zip/stage/manifest.json
126
+ # Source maps are useful loading unpacked, but only bloat a store upload, so
127
+ # they stay in dist and are excluded from the archive.
128
+ # zip adds to an existing archive rather than replacing it, so a rebuild at
129
+ # the same commit would otherwise keep files the build no longer produces.
130
+ # $$ escapes the shell's expansion from Make's own.
131
+ @rm -f "browser-ext/zip/calkit-browser-ext.zip"
132
+ @cd browser-ext/zip/stage && zip -qr \
133
+ "../calkit-browser-ext.zip" . \
134
+ -x '.*' '*/.*' '*.map'
135
+ @rm -rf browser-ext/zip/stage
136
+
137
+ .PHONY: browser-ext-dev
138
+ browser-ext-dev: ## Rebuild the browser extension on every change.
139
+ @echo "🚀 Watching the browser extension"
140
+ # Rebuilds on save. Chrome still needs the extension reloaded, since it
141
+ # reads a content script from disk when a page loads. Vite doesn't type
142
+ # check, so run 'cd browser-ext && npm run check' alongside this.
143
+ @cd browser-ext && npm ci && npm run dev
144
+
145
+ .PHONY: browser-ext-clean-zips
146
+ browser-ext-clean-zips: ## Delete all built browser extension ZIPs.
147
+ @rm -rf browser-ext/zip
148
+
149
+ .PHONY: assistant
150
+ assistant: ## Run the desktop assistant locally for development.
151
+ @cd assistant && uv run main.py
152
+
153
+ .PHONY: test-assistant
154
+ test-assistant: ## Run the desktop assistant's offscreen smoke tests.
155
+ @cd assistant && QT_QPA_PLATFORM=offscreen uv run pytest