calkit-python 0.41.10__tar.gz → 0.41.11__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {calkit_python-0.41.10 → calkit_python-0.41.11}/PKG-INFO +1 -1
- calkit_python-0.41.11/calkit/cli/describe.py +63 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/cli/list.py +18 -2
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/cli/main/core.py +6 -1
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/cli/update.py +558 -4
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/core.py +12 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/pipeline.py +25 -10
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/cli/main/test_core.py +16 -1
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/cli/test_list.py +19 -2
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/cli/test_update.py +136 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/test_pipeline.py +2 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/calkit-yaml.md +2 -1
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/cli-reference.md +261 -6
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/existing-project.md +7 -6
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/index.md +1 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/mkdocs.yml +1 -0
- calkit_python-0.41.11/vscode-ext/images/calkit-icon.svg +22 -0
- calkit_python-0.41.11/vscode-ext/package.json +571 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/vscode-ext/src/environments.ts +104 -0
- calkit_python-0.41.11/vscode-ext/src/extension.ts +7547 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/vscode-ext/src/notebooks.ts +25 -16
- calkit_python-0.41.11/vscode-ext/src/sidebar.ts +862 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/vscode-ext/src/test/environments.test.ts +94 -0
- calkit_python-0.41.11/vscode-ext/src/test/notebooks.test.ts +126 -0
- calkit_python-0.41.11/vscode-ext/src/types.ts +72 -0
- calkit_python-0.41.10/calkit/cli/describe.py +0 -18
- calkit_python-0.41.10/vscode-ext/package.json +0 -141
- calkit_python-0.41.10/vscode-ext/src/extension.ts +0 -3660
- calkit_python-0.41.10/vscode-ext/src/test/notebooks.test.ts +0 -70
- calkit_python-0.41.10/vscode-ext/src/types.ts +0 -29
- {calkit_python-0.41.10 → calkit_python-0.41.11}/.claude-plugin/marketplace.json +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/.gitattributes +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/.gitignore +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/.pre-commit-config.yaml +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/.prettierignore +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/.python-version +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/.vscode/launch.json +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/.vscode/tasks.json +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/.yarnrc.yml +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/AGENTS.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/CITATION.cff +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/CODE_OF_CONDUCT.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/CONTRIBUTING.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/LICENSE +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/Makefile +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/README.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/agent-plugin/.claude-plugin/plugin.json +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/agent-plugin/skills/add-pipeline-stage/SKILL.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/agent-plugin/skills/conventions/SKILL.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/agent-plugin/skills/create-pipeline/SKILL.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/babel.config.js +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/__init__.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/__main__.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/calc.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/check.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/cli/__init__.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/cli/check.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/cli/cloud.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/cli/config.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/cli/core.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/cli/dev.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/cli/import_.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/cli/latex.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/cli/main/__init__.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/cli/main/xr.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/cli/new.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/cli/notebooks.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/cli/office.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/cli/overleaf.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/cli/scheduler.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/cloud.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/conda.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/config.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/datasets.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/dependencies.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/detect.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/docker.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/dvc/__init__.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/dvc/core.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/dvc/zip.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/environments.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/fs.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/git.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/github.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/gui.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/install.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/invenio.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/julia.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/jupyter.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/jupyterlab/__init__.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/jupyterlab/routes.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/labextension/package.json +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/labextension/schemas/calkit/package.json.orig +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/labextension/schemas/calkit/plugin.json +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/labextension/static/502.9a2c5772a15466e923ef.js +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/labextension/static/695.2c41003a452d43d2b358.js +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/labextension/static/867.a42a046aa5108f54f8fb.js +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/labextension/static/909.e3f9cc3408834a7fdcc3.js +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/labextension/static/946.050af2abf7845cfbdbd2.js +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/labextension/static/946.050af2abf7845cfbdbd2.js.LICENSE.txt +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/labextension/static/b2f1c3efe70cb539d121.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/labextension/static/remoteEntry.65469af996e7a96aa983.js +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/labextension/static/style.js +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/labextension/static/third-party-licenses.json +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/licenses.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/magics.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/matlab.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/models/__init__.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/models/core.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/models/io.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/models/iteration.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/models/pipeline.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/notebooks.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/office.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/ops.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/overleaf.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/releases.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/server.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/templates/__init__.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/templates/core.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/templates/latex/__init__.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/templates/latex/article/paper.tex +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/templates/latex/core.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/templates/latex/jfm/jfm.bst +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/templates/latex/jfm/jfm.cls +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/templates/latex/jfm/lineno-FLM.sty +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/templates/latex/jfm/paper.tex +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/templates/latex/jfm/upmath.sty +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/__init__.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/cli/__init__.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/cli/main/__init__.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/cli/main/test_subprojects.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/cli/main/test_xr.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/cli/test_check.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/cli/test_cloud.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/cli/test_config.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/cli/test_import.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/cli/test_latex.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/cli/test_new.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/cli/test_notebooks.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/cli/test_overleaf.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/cli/test_scheduler.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/dvc/__init__.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/dvc/test_core.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/dvc/test_zip.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/jupyterlab/__init__.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/jupyterlab/test_routes.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/models/__init__.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/models/test_iteration.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/models/test_pipeline.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/test_calc.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/test_check.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/test_cloud.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/test_conda.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/test_core.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/test_dependencies.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/test_detect.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/test_docker.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/test_environments.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/test_fs.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/test_git.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/test_install.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/test_invenio.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/test_julia.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/test_jupyter.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/test_licenses.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/test_magics.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/test_matlab.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/test_notebooks.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/test_releases.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/calkit/tests/test_templates.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/conftest.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/CNAME +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/ai-tools.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/apps.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/calculations.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/cloud-integration.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/datasets.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/dependencies.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/environments.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/examples.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/governance.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/help.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/hpc.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/img/c-to-the-k-white.svg +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/img/calkit-fragmentation-compendium.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/img/calkit-no-bg.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/img/connect-zenodo.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/img/jupyterlab/all-green.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/img/jupyterlab/collect-data-stale.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/img/jupyterlab/new-env.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/img/jupyterlab/new-notebook.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/img/jupyterlab/pipeline-badge.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/img/jupyterlab-params.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/img/plos-osi-code-2024-03.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/img/vscode-nb-params.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/index.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/installation.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/jupyterlab.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/local-server.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/notebooks.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/overleaf.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/pipeline/index.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/pipeline/manual-steps.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/pipeline/running-and-logging.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/quickstart.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/references.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/releases.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/reproducibility.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/subprojects.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/adding-latex-pub-docker.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/ai-agents.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/conda-envs.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/first-project.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/github-actions.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/actions-repo-secrets.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/latex-codespaces/building-codespace.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/latex-codespaces/codespaces-secrets-2.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/latex-codespaces/editor-split.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/latex-codespaces/go-to-linked-code.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/latex-codespaces/issue-from-selection.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/latex-codespaces/new-project.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/latex-codespaces/new-pub-2.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/latex-codespaces/new-token.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/latex-codespaces/paper.tex.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/latex-codespaces/project-home-3.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/latex-codespaces/push.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/latex-codespaces/stage.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/office/anakin-excel.jpg +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/office/chart-more-rows.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/office/create-project.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/office/elsevier-research-data-guidelines.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/office/excel-chart.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/office/excel-data.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/office/insert-link-to-file.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/office/needs-clone.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/office/new-stage.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/office/phd-comics-version-control.webp +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/office/pipeline-out-of-date.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/office/status-more-rows.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/office/uncommitted-changes.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/office/untracked-data.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/office/updated-publication.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/office/word-to-pdf-stage-2.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/office/workflow-page.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/openfoam/clone.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/openfoam/create-project.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/openfoam/datasets-page.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/openfoam/figure-on-website-updated.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/openfoam/figure-on-website.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/openfoam/new-token.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/openfoam/reclone.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/openfoam/status-after-import-dataset.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/quick-actions.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/run-proc.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/vscode-slurm-notebook/create-calkit-env.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/vscode-slurm-notebook/create-inner-env.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/vscode-slurm-notebook/create-new-calkit-env.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/vscode-slurm-notebook/select-calkit-env.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/vscode-slurm-notebook/slurm-job-running.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/vscode-slurm-notebook/slurm-launch-options.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/img/vscode-slurm-notebook/starting-slurm-job.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/jupyterlab.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/latex-codespaces.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/matlab.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/notebook-pipeline.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/office.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/openfoam.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/procedures.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/tutorials/vscode-slurm-notebook.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/docs/version-control.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/flake.lock +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/flake.nix +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/install.json +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/jest.config.js +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/jupyter-config/server-config/calkit.json +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/package.json +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/pyproject.toml +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/schema/plugin.json +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/scripts/generate-docs-references.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/scripts/install.ps1 +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/scripts/install.sh +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/scripts/make-calk9.sh +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/scripts/sync-docs.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/src/__tests__/useQueries.spec.ts +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/src/calkit-config.ts +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/src/cell-output-marker.ts +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/src/components/commit-dialog.tsx +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/src/components/environment-editor.tsx +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/src/components/notebook-registration.tsx +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/src/components/notebook-toolbar.tsx +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/src/components/pipeline-status-bar.tsx +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/src/components/project-info-editor.tsx +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/src/components/sidebar-settings.tsx +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/src/components/sidebar.tsx +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/src/components/stage-editor.tsx +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/src/feature-flags.ts +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/src/file-browser-menu.ts +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/src/hooks/__tests__/useQueries.test.tsx +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/src/hooks/useQueries.ts +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/src/icons.ts +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/src/index.ts +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/src/io-tracker.ts +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/src/pipeline-state.ts +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/src/queryClient.ts +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/src/request.ts +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/src/shims-mainmenu.d.ts +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/style/base.css +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/style/cell-output-marker.css +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/style/environment-editor.css +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/style/environment-selector.css +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/style/img/calkit-no-bg.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/style/index.css +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/style/index.js +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/style/notebook-toolbar.css +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/style/pipeline-status-bar.css +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/style/sidebar.css +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/test/dvc-md5-dir/osx-arm64.txt +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/test/nb-julia.ipynb +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/test/nb-params.ipynb +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/test/nb-subdir.ipynb +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/test/pipeline.ipynb +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/test/script.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/test/test-log.log +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/tsconfig.json +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/tsconfig.test.json +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/ui-tests/.gitignore +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/ui-tests/README.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/ui-tests/jupyter_server_test_config.py +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/ui-tests/package.json +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/ui-tests/playwright.config.js +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/ui-tests/tests/calkit.spec.ts +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/ui-tests/yarn.lock +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/uv.lock +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/vscode-ext/.gitignore +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/vscode-ext/.vscodeignore +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/vscode-ext/CHANGELOG.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/vscode-ext/LICENSE +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/vscode-ext/README.md +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/vscode-ext/images/calkit-no-bg.png +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/vscode-ext/package-lock.json +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/vscode-ext/scripts/set-proposed-api.js +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/vscode-ext/src/test/kernel-selection.test.ts +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/vscode-ext/tsconfig.json +0 -0
- {calkit_python-0.41.10 → calkit_python-0.41.11}/yarn.lock +0 -0
|
@@ -0,0 +1,63 @@
|
|
|
1
|
+
"""CLI for describing things."""
|
|
2
|
+
|
|
3
|
+
from __future__ import annotations
|
|
4
|
+
|
|
5
|
+
import json
|
|
6
|
+
from typing import Annotated
|
|
7
|
+
|
|
8
|
+
import typer
|
|
9
|
+
|
|
10
|
+
import calkit
|
|
11
|
+
from calkit.cli import raise_error
|
|
12
|
+
from calkit.environments import get_env_lock_fpath
|
|
13
|
+
|
|
14
|
+
describe_app = typer.Typer(no_args_is_help=True)
|
|
15
|
+
|
|
16
|
+
|
|
17
|
+
@describe_app.command(name="system")
|
|
18
|
+
def describe_system():
|
|
19
|
+
"""Describe the system."""
|
|
20
|
+
system_info = calkit.get_system_info()
|
|
21
|
+
typer.echo(json.dumps(system_info, indent=2))
|
|
22
|
+
|
|
23
|
+
|
|
24
|
+
@describe_app.command(name="env")
|
|
25
|
+
def describe_env(
|
|
26
|
+
name: Annotated[
|
|
27
|
+
str,
|
|
28
|
+
typer.Option("--name", "-n", help="Environment name."),
|
|
29
|
+
],
|
|
30
|
+
):
|
|
31
|
+
"""Describe a single environment, including spec and lock file paths."""
|
|
32
|
+
ck_info = calkit.load_calkit_info()
|
|
33
|
+
envs: dict = ck_info.get("environments", {})
|
|
34
|
+
if name not in envs:
|
|
35
|
+
raise_error(f"Environment '{name}' not found.")
|
|
36
|
+
env = envs[name]
|
|
37
|
+
lock_path = get_env_lock_fpath(env=env, env_name=name)
|
|
38
|
+
result = {
|
|
39
|
+
"kind": env.get("kind"),
|
|
40
|
+
"spec_path": env.get("path"),
|
|
41
|
+
"lock_path": lock_path,
|
|
42
|
+
"prefix": env.get("prefix"),
|
|
43
|
+
"python": env.get("python"),
|
|
44
|
+
}
|
|
45
|
+
typer.echo(json.dumps(result, indent=2))
|
|
46
|
+
|
|
47
|
+
|
|
48
|
+
@describe_app.command(name="envs")
|
|
49
|
+
def describe_envs():
|
|
50
|
+
"""Describe all environments, including spec and lock file paths."""
|
|
51
|
+
ck_info = calkit.load_calkit_info()
|
|
52
|
+
envs: dict = ck_info.get("environments", {})
|
|
53
|
+
result = {}
|
|
54
|
+
for env_name, env in envs.items():
|
|
55
|
+
lock_path = get_env_lock_fpath(env=env, env_name=env_name)
|
|
56
|
+
result[env_name] = {
|
|
57
|
+
"kind": env.get("kind"),
|
|
58
|
+
"spec_path": env.get("path"),
|
|
59
|
+
"lock_path": lock_path,
|
|
60
|
+
"prefix": env.get("prefix"),
|
|
61
|
+
"python": env.get("python"),
|
|
62
|
+
}
|
|
63
|
+
typer.echo(json.dumps(result, indent=2))
|
|
@@ -7,7 +7,7 @@ from typing import Annotated, Literal
|
|
|
7
7
|
import typer
|
|
8
8
|
|
|
9
9
|
import calkit
|
|
10
|
-
from calkit.cli import AliasGroup, warn
|
|
10
|
+
from calkit.cli import AliasGroup, raise_error, warn
|
|
11
11
|
|
|
12
12
|
list_app = typer.Typer(cls=AliasGroup, no_args_is_help=True)
|
|
13
13
|
|
|
@@ -167,12 +167,28 @@ def list_stages(
|
|
|
167
167
|
list[str] | None,
|
|
168
168
|
typer.Option("--kind", "-k", help="Filter stages by kind."),
|
|
169
169
|
] = None,
|
|
170
|
+
stale_only: Annotated[
|
|
171
|
+
bool, typer.Option("--stale", help="Show only stale stages.")
|
|
172
|
+
] = False,
|
|
170
173
|
):
|
|
171
174
|
"""List pipeline stages."""
|
|
172
|
-
|
|
175
|
+
ck_info = calkit.load_calkit_info()
|
|
176
|
+
stages = ck_info.get("pipeline", {}).get("stages", {})
|
|
177
|
+
# If we only want stale stages, we need to get the status first.
|
|
178
|
+
# This compiles the pipeline, cleans notebooks, and checks environments,
|
|
179
|
+
# all of which can affect whether a stage is stale, so we don't skip them.
|
|
180
|
+
if stale_only:
|
|
181
|
+
status = calkit.pipeline.get_status(ck_info=ck_info)
|
|
182
|
+
if status.errors:
|
|
183
|
+
raise_error(
|
|
184
|
+
"Failed to determine stale stages: " + "; ".join(status.errors)
|
|
185
|
+
)
|
|
186
|
+
stale_stage_names = status.stale_stage_names
|
|
173
187
|
for name, stage in stages.items():
|
|
174
188
|
if kinds is not None and stage.get("kind") not in kinds:
|
|
175
189
|
continue
|
|
190
|
+
if stale_only and name not in stale_stage_names:
|
|
191
|
+
continue
|
|
176
192
|
typer.echo(name)
|
|
177
193
|
|
|
178
194
|
|
|
@@ -196,7 +196,12 @@ def init(
|
|
|
196
196
|
repo = calkit.git.get_repo()
|
|
197
197
|
repo.git.add(".dvc")
|
|
198
198
|
repo.git.commit("-m", "Initialize DVC")
|
|
199
|
-
#
|
|
199
|
+
# Create an empty calkit.yaml if one doesn't already exist
|
|
200
|
+
if not os.path.isfile("calkit.yaml"):
|
|
201
|
+
with open("calkit.yaml", "w"):
|
|
202
|
+
pass
|
|
203
|
+
repo.git.add("calkit.yaml")
|
|
204
|
+
repo.git.commit("-m", "Initialize Calkit")
|
|
200
205
|
# TODO: Initialize `dvc.yaml`
|
|
201
206
|
# TODO: Add a sane .gitignore file
|
|
202
207
|
# TODO: Add a sane LICENSE file?
|