calkit-python 0.37.4__tar.gz → 0.37.5__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (315) hide show
  1. {calkit_python-0.37.4 → calkit_python-0.37.5}/PKG-INFO +1 -1
  2. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/cli/notebooks.py +3 -3
  3. {calkit_python-0.37.4 → calkit_python-0.37.5}/.gitignore +0 -0
  4. {calkit_python-0.37.4 → calkit_python-0.37.5}/.pre-commit-config.yaml +0 -0
  5. {calkit_python-0.37.4 → calkit_python-0.37.5}/.prettierignore +0 -0
  6. {calkit_python-0.37.4 → calkit_python-0.37.5}/.python-version +0 -0
  7. {calkit_python-0.37.4 → calkit_python-0.37.5}/.vscode/launch.json +0 -0
  8. {calkit_python-0.37.4 → calkit_python-0.37.5}/.vscode/tasks.json +0 -0
  9. {calkit_python-0.37.4 → calkit_python-0.37.5}/.yarnrc.yml +0 -0
  10. {calkit_python-0.37.4 → calkit_python-0.37.5}/CITATION.cff +0 -0
  11. {calkit_python-0.37.4 → calkit_python-0.37.5}/CODE_OF_CONDUCT.md +0 -0
  12. {calkit_python-0.37.4 → calkit_python-0.37.5}/CONTRIBUTING.md +0 -0
  13. {calkit_python-0.37.4 → calkit_python-0.37.5}/LICENSE +0 -0
  14. {calkit_python-0.37.4 → calkit_python-0.37.5}/Makefile +0 -0
  15. {calkit_python-0.37.4 → calkit_python-0.37.5}/README.md +0 -0
  16. {calkit_python-0.37.4 → calkit_python-0.37.5}/babel.config.js +0 -0
  17. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/__init__.py +0 -0
  18. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/__main__.py +0 -0
  19. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/calc.py +0 -0
  20. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/check.py +0 -0
  21. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/cli/__init__.py +0 -0
  22. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/cli/check.py +0 -0
  23. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/cli/cloud.py +0 -0
  24. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/cli/config.py +0 -0
  25. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/cli/core.py +0 -0
  26. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/cli/describe.py +0 -0
  27. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/cli/import_.py +0 -0
  28. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/cli/latex.py +0 -0
  29. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/cli/list.py +0 -0
  30. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/cli/main/__init__.py +0 -0
  31. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/cli/main/core.py +0 -0
  32. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/cli/main/xr.py +0 -0
  33. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/cli/new.py +0 -0
  34. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/cli/office.py +0 -0
  35. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/cli/overleaf.py +0 -0
  36. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/cli/slurm.py +0 -0
  37. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/cli/update.py +0 -0
  38. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/cloud.py +0 -0
  39. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/conda.py +0 -0
  40. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/config.py +0 -0
  41. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/core.py +0 -0
  42. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/datasets.py +0 -0
  43. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/detect.py +0 -0
  44. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/docker.py +0 -0
  45. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/dvc/__init__.py +0 -0
  46. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/dvc/core.py +0 -0
  47. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/dvc/zip.py +0 -0
  48. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/environments.py +0 -0
  49. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/fs.py +0 -0
  50. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/git.py +0 -0
  51. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/github.py +0 -0
  52. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/gui.py +0 -0
  53. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/invenio.py +0 -0
  54. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/julia.py +0 -0
  55. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/jupyter.py +0 -0
  56. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/jupyterlab/__init__.py +0 -0
  57. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/jupyterlab/routes.py +0 -0
  58. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/labextension/package.json +0 -0
  59. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/labextension/schemas/calkit/package.json.orig +0 -0
  60. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/labextension/schemas/calkit/plugin.json +0 -0
  61. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/labextension/static/502.9a2c5772a15466e923ef.js +0 -0
  62. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/labextension/static/695.2c41003a452d43d2b358.js +0 -0
  63. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/labextension/static/867.a42a046aa5108f54f8fb.js +0 -0
  64. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/labextension/static/909.e3f9cc3408834a7fdcc3.js +0 -0
  65. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/labextension/static/946.050af2abf7845cfbdbd2.js +0 -0
  66. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/labextension/static/946.050af2abf7845cfbdbd2.js.LICENSE.txt +0 -0
  67. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/labextension/static/b2f1c3efe70cb539d121.png +0 -0
  68. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/labextension/static/remoteEntry.65469af996e7a96aa983.js +0 -0
  69. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/labextension/static/style.js +0 -0
  70. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/labextension/static/third-party-licenses.json +0 -0
  71. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/licenses.py +0 -0
  72. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/magics.py +0 -0
  73. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/matlab.py +0 -0
  74. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/models/__init__.py +0 -0
  75. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/models/core.py +0 -0
  76. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/models/io.py +0 -0
  77. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/models/iteration.py +0 -0
  78. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/models/pipeline.py +0 -0
  79. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/notebooks.py +0 -0
  80. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/office.py +0 -0
  81. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/ops.py +0 -0
  82. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/overleaf.py +0 -0
  83. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/pipeline.py +0 -0
  84. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/releases.py +0 -0
  85. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/server.py +0 -0
  86. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/templates/__init__.py +0 -0
  87. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/templates/core.py +0 -0
  88. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/templates/latex/__init__.py +0 -0
  89. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/templates/latex/article/paper.tex +0 -0
  90. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/templates/latex/core.py +0 -0
  91. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/templates/latex/jfm/jfm.bst +0 -0
  92. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/templates/latex/jfm/jfm.cls +0 -0
  93. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/templates/latex/jfm/lineno-FLM.sty +0 -0
  94. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/templates/latex/jfm/paper.tex +0 -0
  95. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/templates/latex/jfm/upmath.sty +0 -0
  96. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/__init__.py +0 -0
  97. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/cli/__init__.py +0 -0
  98. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/cli/main/__init__.py +0 -0
  99. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/cli/main/test_core.py +0 -0
  100. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/cli/main/test_xr.py +0 -0
  101. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/cli/test_check.py +0 -0
  102. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/cli/test_config.py +0 -0
  103. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/cli/test_import.py +0 -0
  104. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/cli/test_latex.py +0 -0
  105. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/cli/test_list.py +0 -0
  106. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/cli/test_new.py +0 -0
  107. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/cli/test_notebooks.py +0 -0
  108. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/cli/test_overleaf.py +0 -0
  109. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/cli/test_update.py +0 -0
  110. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/dvc/__init__.py +0 -0
  111. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/dvc/test_core.py +0 -0
  112. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/dvc/test_zip.py +0 -0
  113. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/jupyterlab/__init__.py +0 -0
  114. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/jupyterlab/test_routes.py +0 -0
  115. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/models/__init__.py +0 -0
  116. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/models/test_iteration.py +0 -0
  117. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/models/test_pipeline.py +0 -0
  118. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/test_calc.py +0 -0
  119. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/test_check.py +0 -0
  120. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/test_conda.py +0 -0
  121. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/test_core.py +0 -0
  122. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/test_detect.py +0 -0
  123. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/test_docker.py +0 -0
  124. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/test_environments.py +0 -0
  125. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/test_fs.py +0 -0
  126. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/test_git.py +0 -0
  127. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/test_invenio.py +0 -0
  128. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/test_julia.py +0 -0
  129. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/test_jupyter.py +0 -0
  130. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/test_magics.py +0 -0
  131. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/test_matlab.py +0 -0
  132. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/test_notebooks.py +0 -0
  133. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/test_pipeline.py +0 -0
  134. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/test_releases.py +0 -0
  135. {calkit_python-0.37.4 → calkit_python-0.37.5}/calkit/tests/test_templates.py +0 -0
  136. {calkit_python-0.37.4 → calkit_python-0.37.5}/conftest.py +0 -0
  137. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/CNAME +0 -0
  138. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/apps.md +0 -0
  139. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/calculations.md +0 -0
  140. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/calkit-yaml.md +0 -0
  141. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/cli-reference.md +0 -0
  142. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/cloud-integration.md +0 -0
  143. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/datasets.md +0 -0
  144. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/dependencies.md +0 -0
  145. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/environments.md +0 -0
  146. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/examples.md +0 -0
  147. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/governance.md +0 -0
  148. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/help.md +0 -0
  149. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/img/c-to-the-k-white.svg +0 -0
  150. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/img/calkit-fragmentation-compendium.png +0 -0
  151. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/img/calkit-no-bg.png +0 -0
  152. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/img/connect-zenodo.png +0 -0
  153. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/img/jupyterlab/all-green.png +0 -0
  154. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/img/jupyterlab/collect-data-stale.png +0 -0
  155. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/img/jupyterlab/new-env.png +0 -0
  156. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/img/jupyterlab/new-notebook.png +0 -0
  157. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/img/jupyterlab/pipeline-badge.png +0 -0
  158. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/img/jupyterlab-params.png +0 -0
  159. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/img/plos-osi-code-2024-03.png +0 -0
  160. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/img/vscode-nb-params.png +0 -0
  161. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/index.md +0 -0
  162. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/installation.md +0 -0
  163. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/jupyterlab.md +0 -0
  164. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/local-server.md +0 -0
  165. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/notebooks.md +0 -0
  166. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/overleaf.md +0 -0
  167. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/pipeline/index.md +0 -0
  168. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/pipeline/manual-steps.md +0 -0
  169. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/pipeline/running-and-logging.md +0 -0
  170. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/pipeline/slurm.md +0 -0
  171. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/quickstart.md +0 -0
  172. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/references.md +0 -0
  173. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/releases.md +0 -0
  174. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/reproducibility.md +0 -0
  175. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/tutorials/adding-latex-pub-docker.md +0 -0
  176. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/tutorials/conda-envs.md +0 -0
  177. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/tutorials/existing-project.md +0 -0
  178. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/tutorials/first-project.md +0 -0
  179. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/tutorials/github-actions.md +0 -0
  180. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/tutorials/img/actions-repo-secrets.png +0 -0
  181. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/tutorials/img/latex-codespaces/building-codespace.png +0 -0
  182. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/tutorials/img/latex-codespaces/codespaces-secrets-2.png +0 -0
  183. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/tutorials/img/latex-codespaces/editor-split.png +0 -0
  184. {calkit_python-0.37.4 → calkit_python-0.37.5}/docs/tutorials/img/latex-codespaces/go-to-linked-code.png +0 -0
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@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: calkit-python
3
- Version: 0.37.4
3
+ Version: 0.37.5
4
4
  Summary: Reproducibility simplified.
5
5
  Project-URL: Homepage, https://calkit.org
6
6
  Project-URL: Issues, https://github.com/calkit/calkit/issues
@@ -586,9 +586,9 @@ def execute_notebook(
586
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  run_in_env(cmd, env_name=env_name, no_check=no_check, verbose=verbose)
587
587
  if not no_replace:
588
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  # Replace original notebook outputs with those from executed version
589
- with open(fpath_out_exec, "r") as f:
589
+ with open(fpath_out_exec, "r", encoding="utf-8") as f:
590
590
  executed_nb = json.load(f)
591
- with open(path, "r") as f:
591
+ with open(path, "r", encoding="utf-8") as f:
592
592
  original_nb = json.load(f)
593
593
  for orig_cell, exec_cell in zip(
594
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  original_nb.get("cells", []), executed_nb.get("cells", [])
@@ -600,7 +600,7 @@ def execute_notebook(
600
600
  and "execution_count" in exec_cell
601
601
  ):
602
602
  orig_cell["execution_count"] = exec_cell["execution_count"]
603
- with open(path, "w") as f:
603
+ with open(path, "w", encoding="utf-8") as f:
604
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  json.dump(original_nb, f, indent=1)
605
605
  for to_fmt in to:
606
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  if to_fmt != "notebook":
File without changes
File without changes
File without changes