calkit-python 0.34.4__tar.gz → 0.34.6__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (274) hide show
  1. {calkit_python-0.34.4 → calkit_python-0.34.6}/PKG-INFO +1 -1
  2. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/cli/list.py +16 -1
  3. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/cli/main.py +3 -0
  4. calkit_python-0.34.6/calkit/tests/cli/test_list.py +36 -0
  5. {calkit_python-0.34.4 → calkit_python-0.34.6}/scripts/make-calk9.sh +1 -1
  6. calkit_python-0.34.4/calkit/tests/cli/test_list.py +0 -12
  7. {calkit_python-0.34.4 → calkit_python-0.34.6}/.gitignore +0 -0
  8. {calkit_python-0.34.4 → calkit_python-0.34.6}/.pre-commit-config.yaml +0 -0
  9. {calkit_python-0.34.4 → calkit_python-0.34.6}/.prettierignore +0 -0
  10. {calkit_python-0.34.4 → calkit_python-0.34.6}/.python-version +0 -0
  11. {calkit_python-0.34.4 → calkit_python-0.34.6}/.yarnrc.yml +0 -0
  12. {calkit_python-0.34.4 → calkit_python-0.34.6}/CITATION.cff +0 -0
  13. {calkit_python-0.34.4 → calkit_python-0.34.6}/CODE_OF_CONDUCT.md +0 -0
  14. {calkit_python-0.34.4 → calkit_python-0.34.6}/CONTRIBUTING.md +0 -0
  15. {calkit_python-0.34.4 → calkit_python-0.34.6}/LICENSE +0 -0
  16. {calkit_python-0.34.4 → calkit_python-0.34.6}/Makefile +0 -0
  17. {calkit_python-0.34.4 → calkit_python-0.34.6}/README.md +0 -0
  18. {calkit_python-0.34.4 → calkit_python-0.34.6}/babel.config.js +0 -0
  19. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/__init__.py +0 -0
  20. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/__main__.py +0 -0
  21. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/calc.py +0 -0
  22. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/check.py +0 -0
  23. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/cli/__init__.py +0 -0
  24. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/cli/check.py +0 -0
  25. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/cli/cloud.py +0 -0
  26. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/cli/config.py +0 -0
  27. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/cli/core.py +0 -0
  28. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/cli/describe.py +0 -0
  29. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/cli/import_.py +0 -0
  30. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/cli/latex.py +0 -0
  31. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/cli/new.py +0 -0
  32. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/cli/notebooks.py +0 -0
  33. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/cli/office.py +0 -0
  34. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/cli/overleaf.py +0 -0
  35. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/cli/slurm.py +0 -0
  36. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/cli/update.py +0 -0
  37. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/cloud.py +0 -0
  38. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/conda.py +0 -0
  39. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/config.py +0 -0
  40. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/core.py +0 -0
  41. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/datasets.py +0 -0
  42. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/detect.py +0 -0
  43. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/docker.py +0 -0
  44. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/dvc.py +0 -0
  45. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/environments.py +0 -0
  46. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/git.py +0 -0
  47. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/github.py +0 -0
  48. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/gui.py +0 -0
  49. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/invenio.py +0 -0
  50. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/jupyter.py +0 -0
  51. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/jupyterlab/__init__.py +0 -0
  52. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/jupyterlab/routes.py +0 -0
  53. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/labextension/package.json +0 -0
  54. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/labextension/schemas/calkit/package.json.orig +0 -0
  55. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/labextension/schemas/calkit/plugin.json +0 -0
  56. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/labextension/static/502.9a2c5772a15466e923ef.js +0 -0
  57. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/labextension/static/695.2c41003a452d43d2b358.js +0 -0
  58. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/labextension/static/867.a42a046aa5108f54f8fb.js +0 -0
  59. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/labextension/static/909.99b13e1e3c2a6e1ceb30.js +0 -0
  60. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/labextension/static/946.050af2abf7845cfbdbd2.js +0 -0
  61. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/labextension/static/946.050af2abf7845cfbdbd2.js.LICENSE.txt +0 -0
  62. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/labextension/static/b2f1c3efe70cb539d121.png +0 -0
  63. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/labextension/static/remoteEntry.63846b8de2465d49bd89.js +0 -0
  64. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/labextension/static/style.js +0 -0
  65. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/labextension/static/third-party-licenses.json +0 -0
  66. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/licenses.py +0 -0
  67. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/magics.py +0 -0
  68. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/matlab.py +0 -0
  69. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/models/__init__.py +0 -0
  70. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/models/core.py +0 -0
  71. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/models/io.py +0 -0
  72. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/models/iteration.py +0 -0
  73. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/models/pipeline.py +0 -0
  74. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/notebooks.py +0 -0
  75. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/office.py +0 -0
  76. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/ops.py +0 -0
  77. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/overleaf.py +0 -0
  78. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/pipeline.py +0 -0
  79. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/releases.py +0 -0
  80. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/server.py +0 -0
  81. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/templates/__init__.py +0 -0
  82. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/templates/core.py +0 -0
  83. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/templates/latex/__init__.py +0 -0
  84. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/templates/latex/article/paper.tex +0 -0
  85. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/templates/latex/core.py +0 -0
  86. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/templates/latex/jfm/jfm.bst +0 -0
  87. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/templates/latex/jfm/jfm.cls +0 -0
  88. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/templates/latex/jfm/lineno-FLM.sty +0 -0
  89. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/templates/latex/jfm/paper.tex +0 -0
  90. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/templates/latex/jfm/upmath.sty +0 -0
  91. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/tests/__init__.py +0 -0
  92. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/tests/cli/__init__.py +0 -0
  93. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/tests/cli/test_check.py +0 -0
  94. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/tests/cli/test_config.py +0 -0
  95. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/tests/cli/test_import.py +0 -0
  96. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/tests/cli/test_latex.py +0 -0
  97. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/tests/cli/test_main.py +0 -0
  98. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/tests/cli/test_new.py +0 -0
  99. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/tests/cli/test_notebooks.py +0 -0
  100. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/tests/cli/test_overleaf.py +0 -0
  101. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/tests/jupyterlab/__init__.py +0 -0
  102. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/tests/jupyterlab/test_routes.py +0 -0
  103. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/tests/models/__init__.py +0 -0
  104. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/tests/models/test_iteration.py +0 -0
  105. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/tests/models/test_pipeline.py +0 -0
  106. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/tests/test_calc.py +0 -0
  107. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/tests/test_check.py +0 -0
  108. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/tests/test_conda.py +0 -0
  109. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/tests/test_core.py +0 -0
  110. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/tests/test_detect.py +0 -0
  111. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/tests/test_dvc.py +0 -0
  112. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/tests/test_environments.py +0 -0
  113. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/tests/test_git.py +0 -0
  114. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/tests/test_invenio.py +0 -0
  115. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/tests/test_jupyter.py +0 -0
  116. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/tests/test_magics.py +0 -0
  117. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/tests/test_matlab.py +0 -0
  118. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/tests/test_notebooks.py +0 -0
  119. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/tests/test_pipeline.py +0 -0
  120. {calkit_python-0.34.4 → calkit_python-0.34.6}/calkit/tests/test_templates.py +0 -0
  121. {calkit_python-0.34.4 → calkit_python-0.34.6}/conftest.py +0 -0
  122. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/CNAME +0 -0
  123. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/apps.md +0 -0
  124. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/calculations.md +0 -0
  125. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/calkit-yaml.md +0 -0
  126. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/cli-reference.md +0 -0
  127. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/cloud-integration.md +0 -0
  128. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/datasets.md +0 -0
  129. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/dependencies.md +0 -0
  130. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/environments.md +0 -0
  131. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/examples.md +0 -0
  132. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/governance.md +0 -0
  133. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/help.md +0 -0
  134. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/img/c-to-the-k-white.svg +0 -0
  135. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/img/calkit-fragmentation-compendium.png +0 -0
  136. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/img/calkit-no-bg.png +0 -0
  137. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/img/connect-zenodo.png +0 -0
  138. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/img/jupyterlab/all-green.png +0 -0
  139. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/img/jupyterlab/collect-data-stale.png +0 -0
  140. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/img/jupyterlab/new-env.png +0 -0
  141. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/img/jupyterlab/new-notebook.png +0 -0
  142. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/img/jupyterlab/pipeline-badge.png +0 -0
  143. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/img/jupyterlab-params.png +0 -0
  144. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/img/plos-osi-code-2024-03.png +0 -0
  145. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/img/vscode-nb-params.png +0 -0
  146. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/index.md +0 -0
  147. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/installation.md +0 -0
  148. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/jupyterlab.md +0 -0
  149. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/local-server.md +0 -0
  150. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/notebooks.md +0 -0
  151. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/overleaf.md +0 -0
  152. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/pipeline/index.md +0 -0
  153. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/pipeline/manual-steps.md +0 -0
  154. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/pipeline/running-and-logging.md +0 -0
  155. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/pipeline/slurm.md +0 -0
  156. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/quickstart.md +0 -0
  157. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/references.md +0 -0
  158. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/releases.md +0 -0
  159. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/reproducibility.md +0 -0
  160. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/adding-latex-pub-docker.md +0 -0
  161. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/conda-envs.md +0 -0
  162. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/existing-project.md +0 -0
  163. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/first-project.md +0 -0
  164. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/github-actions.md +0 -0
  165. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/actions-repo-secrets.png +0 -0
  166. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/latex-codespaces/building-codespace.png +0 -0
  167. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/latex-codespaces/codespaces-secrets-2.png +0 -0
  168. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/latex-codespaces/editor-split.png +0 -0
  169. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/latex-codespaces/go-to-linked-code.png +0 -0
  170. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/latex-codespaces/issue-from-selection.png +0 -0
  171. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/latex-codespaces/new-project.png +0 -0
  172. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/latex-codespaces/new-pub-2.png +0 -0
  173. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/latex-codespaces/new-token.png +0 -0
  174. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/latex-codespaces/paper.tex.png +0 -0
  175. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/latex-codespaces/project-home-3.png +0 -0
  176. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/latex-codespaces/push.png +0 -0
  177. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/latex-codespaces/stage.png +0 -0
  178. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/office/anakin-excel.jpg +0 -0
  179. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/office/chart-more-rows.png +0 -0
  180. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/office/create-project.png +0 -0
  181. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/office/elsevier-research-data-guidelines.png +0 -0
  182. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/office/excel-chart.png +0 -0
  183. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/office/excel-data.png +0 -0
  184. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/office/insert-link-to-file.png +0 -0
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  186. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/office/new-stage.png +0 -0
  187. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/office/phd-comics-version-control.webp +0 -0
  188. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/office/pipeline-out-of-date.png +0 -0
  189. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/office/status-more-rows.png +0 -0
  190. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/office/uncommitted-changes.png +0 -0
  191. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/office/untracked-data.png +0 -0
  192. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/office/updated-publication.png +0 -0
  193. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/office/word-to-pdf-stage-2.png +0 -0
  194. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/office/workflow-page.png +0 -0
  195. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/openfoam/clone.png +0 -0
  196. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/openfoam/create-project.png +0 -0
  197. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/openfoam/datasets-page.png +0 -0
  198. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/openfoam/figure-on-website-updated.png +0 -0
  199. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/openfoam/figure-on-website.png +0 -0
  200. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/openfoam/new-token.png +0 -0
  201. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/openfoam/reclone.png +0 -0
  202. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/openfoam/status-after-import-dataset.png +0 -0
  203. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/quick-actions.png +0 -0
  204. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/img/run-proc.png +0 -0
  205. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/index.md +0 -0
  206. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/jupyterlab.md +0 -0
  207. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/latex-codespaces.md +0 -0
  208. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/matlab.md +0 -0
  209. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/notebook-pipeline.md +0 -0
  210. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/office.md +0 -0
  211. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/openfoam.md +0 -0
  212. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/tutorials/procedures.md +0 -0
  213. {calkit_python-0.34.4 → calkit_python-0.34.6}/docs/version-control.md +0 -0
  214. {calkit_python-0.34.4 → calkit_python-0.34.6}/install.json +0 -0
  215. {calkit_python-0.34.4 → calkit_python-0.34.6}/jest.config.js +0 -0
  216. {calkit_python-0.34.4 → calkit_python-0.34.6}/jupyter-config/server-config/calkit.json +0 -0
  217. {calkit_python-0.34.4 → calkit_python-0.34.6}/mkdocs.yml +0 -0
  218. {calkit_python-0.34.4 → calkit_python-0.34.6}/package.json +0 -0
  219. {calkit_python-0.34.4 → calkit_python-0.34.6}/pyproject.toml +0 -0
  220. {calkit_python-0.34.4 → calkit_python-0.34.6}/schema/plugin.json +0 -0
  221. {calkit_python-0.34.4 → calkit_python-0.34.6}/scripts/install.ps1 +0 -0
  222. {calkit_python-0.34.4 → calkit_python-0.34.6}/scripts/install.sh +0 -0
  223. {calkit_python-0.34.4 → calkit_python-0.34.6}/scripts/sync-docs.py +0 -0
  224. {calkit_python-0.34.4 → calkit_python-0.34.6}/src/__tests__/useQueries.spec.ts +0 -0
  225. {calkit_python-0.34.4 → calkit_python-0.34.6}/src/calkit-config.ts +0 -0
  226. {calkit_python-0.34.4 → calkit_python-0.34.6}/src/cell-output-marker.ts +0 -0
  227. {calkit_python-0.34.4 → calkit_python-0.34.6}/src/components/commit-dialog.tsx +0 -0
  228. {calkit_python-0.34.4 → calkit_python-0.34.6}/src/components/environment-editor.tsx +0 -0
  229. {calkit_python-0.34.4 → calkit_python-0.34.6}/src/components/notebook-registration.tsx +0 -0
  230. {calkit_python-0.34.4 → calkit_python-0.34.6}/src/components/notebook-toolbar.tsx +0 -0
  231. {calkit_python-0.34.4 → calkit_python-0.34.6}/src/components/pipeline-status-bar.tsx +0 -0
  232. {calkit_python-0.34.4 → calkit_python-0.34.6}/src/components/project-info-editor.tsx +0 -0
  233. {calkit_python-0.34.4 → calkit_python-0.34.6}/src/components/sidebar-settings.tsx +0 -0
  234. {calkit_python-0.34.4 → calkit_python-0.34.6}/src/components/sidebar.tsx +0 -0
  235. {calkit_python-0.34.4 → calkit_python-0.34.6}/src/components/stage-editor.tsx +0 -0
  236. {calkit_python-0.34.4 → calkit_python-0.34.6}/src/feature-flags.ts +0 -0
  237. {calkit_python-0.34.4 → calkit_python-0.34.6}/src/file-browser-menu.ts +0 -0
  238. {calkit_python-0.34.4 → calkit_python-0.34.6}/src/hooks/__tests__/useQueries.test.tsx +0 -0
  239. {calkit_python-0.34.4 → calkit_python-0.34.6}/src/hooks/useQueries.ts +0 -0
  240. {calkit_python-0.34.4 → calkit_python-0.34.6}/src/icons.ts +0 -0
  241. {calkit_python-0.34.4 → calkit_python-0.34.6}/src/index.ts +0 -0
  242. {calkit_python-0.34.4 → calkit_python-0.34.6}/src/io-tracker.ts +0 -0
  243. {calkit_python-0.34.4 → calkit_python-0.34.6}/src/pipeline-state.ts +0 -0
  244. {calkit_python-0.34.4 → calkit_python-0.34.6}/src/queryClient.ts +0 -0
  245. {calkit_python-0.34.4 → calkit_python-0.34.6}/src/request.ts +0 -0
  246. {calkit_python-0.34.4 → calkit_python-0.34.6}/src/shims-mainmenu.d.ts +0 -0
  247. {calkit_python-0.34.4 → calkit_python-0.34.6}/style/base.css +0 -0
  248. {calkit_python-0.34.4 → calkit_python-0.34.6}/style/cell-output-marker.css +0 -0
  249. {calkit_python-0.34.4 → calkit_python-0.34.6}/style/environment-editor.css +0 -0
  250. {calkit_python-0.34.4 → calkit_python-0.34.6}/style/environment-selector.css +0 -0
  251. {calkit_python-0.34.4 → calkit_python-0.34.6}/style/img/calkit-no-bg.png +0 -0
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  253. {calkit_python-0.34.4 → calkit_python-0.34.6}/style/index.js +0 -0
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  258. {calkit_python-0.34.4 → calkit_python-0.34.6}/test/nb-julia.ipynb +0 -0
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  263. {calkit_python-0.34.4 → calkit_python-0.34.6}/test/test-log.log +0 -0
  264. {calkit_python-0.34.4 → calkit_python-0.34.6}/tsconfig.json +0 -0
  265. {calkit_python-0.34.4 → calkit_python-0.34.6}/tsconfig.test.json +0 -0
  266. {calkit_python-0.34.4 → calkit_python-0.34.6}/ui-tests/.gitignore +0 -0
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  268. {calkit_python-0.34.4 → calkit_python-0.34.6}/ui-tests/jupyter_server_test_config.py +0 -0
  269. {calkit_python-0.34.4 → calkit_python-0.34.6}/ui-tests/package.json +0 -0
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  272. {calkit_python-0.34.4 → calkit_python-0.34.6}/ui-tests/yarn.lock +0 -0
  273. {calkit_python-0.34.4 → calkit_python-0.34.6}/uv.lock +0 -0
  274. {calkit_python-0.34.4 → calkit_python-0.34.6}/yarn.lock +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: calkit-python
3
- Version: 0.34.4
3
+ Version: 0.34.6
4
4
  Summary: Reproducibility simplified.
5
5
  Project-URL: Homepage, https://calkit.org
6
6
  Project-URL: Issues, https://github.com/calkit/calkit/issues
@@ -2,7 +2,7 @@
2
2
 
3
3
  from __future__ import annotations
4
4
 
5
- from typing import Literal
5
+ from typing import Annotated, Literal
6
6
 
7
7
  import typer
8
8
 
@@ -125,3 +125,18 @@ def list_releases():
125
125
  typer.echo(f" published: {published}")
126
126
  for k, v in obj.items():
127
127
  typer.echo(f" {k}: {v}")
128
+
129
+
130
+ @list_app.command(name="stages")
131
+ def list_stages(
132
+ kinds: Annotated[
133
+ list[str] | None,
134
+ typer.Option("--kind", "-k", help="Filter stages by kind."),
135
+ ] = None,
136
+ ):
137
+ """List stages."""
138
+ stages = calkit.load_calkit_info().get("pipeline", {}).get("stages", {})
139
+ for name, stage in stages.items():
140
+ if kinds is not None and stage.get("kind") not in kinds:
141
+ continue
142
+ typer.echo(name)
@@ -1235,6 +1235,9 @@ def run(
1235
1235
  with open(log_fpath, "r") as f:
1236
1236
  log_content = f.read()
1237
1237
  stage_run_info = _stage_run_info_from_log_content(log_content)
1238
+ # Close logger file handler to prevent permissions issues if deleting
1239
+ dvc.log.logger.removeHandler(file_handler)
1240
+ file_handler.close()
1238
1241
  if save_logs:
1239
1242
  # Get Git status after running
1240
1243
  git_changed_files_after = calkit.git.get_changed_files(repo=repo)
@@ -0,0 +1,36 @@
1
+ """Tests for ``cli.list``."""
2
+
3
+ import subprocess
4
+
5
+ import calkit
6
+
7
+
8
+ def test_list_environments(tmp_dir):
9
+ subprocess.check_call("calkit list environments", shell=True)
10
+ # TODO: Create some environments
11
+
12
+
13
+ def test_list_templates():
14
+ subprocess.check_call("calkit list templates", shell=True)
15
+
16
+
17
+ def test_list_stages(tmp_dir):
18
+ subprocess.check_call("calkit list stages", shell=True)
19
+ ck_info = {
20
+ "pipeline": {
21
+ "stages": {
22
+ "stage1": {"kind": "python-script", "script_path": "train.py"},
23
+ "stage2": {"kind": "shell-command", "command": "echo Hello"},
24
+ }
25
+ }
26
+ }
27
+ with open("calkit.yaml", "w") as f:
28
+ calkit.ryaml.dump(ck_info, f)
29
+ out = subprocess.check_output("calkit list stages", shell=True, text=True)
30
+ assert "stage1" in out
31
+ assert "stage2" in out
32
+ out = subprocess.check_output(
33
+ "calkit list stages --kind python-script", shell=True, text=True
34
+ )
35
+ assert "stage1" in out
36
+ assert "stage2" not in out
@@ -2,7 +2,7 @@
2
2
  set -e
3
3
 
4
4
  # Get version from VCS via hatch
5
- VERSION="$(uvx hatch version)"
5
+ VERSION="$(uvx --with 'virtualenv<20.29.0' hatch version)"
6
6
 
7
7
  # Create calk9 directory structure
8
8
  rm -rf calk9
@@ -1,12 +0,0 @@
1
- """Tests for ``cli.list``."""
2
-
3
- import subprocess
4
-
5
-
6
- def test_list_environments(tmp_dir):
7
- subprocess.check_call("calkit list environments", shell=True)
8
- # TODO: Create some environments
9
-
10
-
11
- def test_list_templates():
12
- subprocess.check_call("calkit list templates", shell=True)
File without changes
File without changes
File without changes