calkit-python 0.30.7__tar.gz → 0.30.9__tar.gz

{calkit_python-0.30.7 → calkit_python-0.30.9}/.github/workflows/test.yml

@@ -2,6 +2,9 @@ name: Run tests
 
 on: pull_request
 
+env:
+  CALKIT_TEST_ZENODO_TOKEN: ${{ secrets.CALKIT_ZENODO_TOKEN }}
+
 jobs:
   linux:
     runs-on: ubuntu-latest
@@ -12,6 +15,8 @@ jobs:
           git config --global user.name github-actions[bot]
           git config --global user.email 41898282+github-actions[bot]@users.noreply.github.com
           git config --global init.defaultBranch main
+      - name: Configure Git push behavior
+        run: git config --global push.autoSetupRemote true
       - name: Setup uv
         uses: astral-sh/setup-uv@v5
       - name: Setup Miniforge
@@ -31,7 +36,7 @@ jobs:
         run: |
           source ~/.bashrc
           pixi --version
-          make test
+          uv run pytest -n 4
   windows:
     runs-on: windows-latest
     timeout-minutes: 20

{calkit_python-0.30.7 → calkit_python-0.30.9}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: calkit-python
-Version: 0.30.7
+Version: 0.30.9
 Summary: Reproducibility simplified.
 Project-URL: Homepage, https://calkit.org
 Project-URL: Issues, https://github.com/calkit/calkit/issues
@@ -31,7 +31,7 @@ Requires-Dist: python-dotenv>=1
 Requires-Dist: pywin32; platform_system == 'Windows'
 Requires-Dist: requests
 Requires-Dist: tqdm>=4.67.1
-Requires-Dist: typer==0.16.0
+Requires-Dist: typer==0.20.0
 Requires-Dist: uvicorn
 Provides-Extra: data
 Requires-Dist: pandas>=2.2.3; extra == 'data'

{calkit_python-0.30.7 → calkit_python-0.30.9}/calkit/__init__.py

@@ -1,4 +1,4 @@
-__version__ = "0.30.7"
+__version__ = "0.30.9"
 
 from .core import *  # noqa: F403, I001
 from . import git  # noqa: F401
@@ -13,6 +13,8 @@ from . import conda  # noqa: F401
 from . import calc  # noqa: F401
 from . import check  # noqa: F401
 from . import github  # noqa: F401
-from . import zenodo  # noqa: F401
+from . import invenio  # noqa: F401
 from . import releases  # noqa: F401
+from . import licenses  # noqa: F401
+from . import overleaf  # noqa: F401
 from .notebooks import declare_notebook  # noqa: F401

{calkit_python-0.30.7 → calkit_python-0.30.9}/calkit/cli/list.py

@@ -7,13 +7,18 @@ from typing import Literal
 import typer
 
 import calkit
+from calkit.cli import warn
 
 list_app = typer.Typer(no_args_is_help=True)
 
 
 def _list_objects(
     kind: Literal[
-        "notebooks", "datasets", "figures", "references", "publications"
+        "notebooks",
+        "datasets",
+        "figures",
+        "references",
+        "publications",
     ],
 ):
     """List objects.
@@ -93,3 +98,30 @@ def list_procedures():
     ck_info = calkit.load_calkit_info()
     for p in ck_info.get("procedures", {}):
         typer.echo(p)
+
+
+@list_app.command(name="releases")
+def list_releases():
+    """List releases."""
+    objs = calkit.load_calkit_info().get("releases", {})
+    for name, obj in objs.items():
+        typer.echo(name + ":")
+        # First figure out if the release is published
+        published = None
+        try:
+            published = calkit.invenio.get(
+                f"/records/{obj.get('record_id')}",
+                service=obj.get("publisher"),
+            )["is_published"]
+        except Exception:
+            try:
+                published = calkit.invenio.get(
+                    f"/records/{obj.get('record_id')}/draft",
+                    service=obj.get("publisher"),
+                )["is_published"]
+            except Exception as e:
+                warn(f"Cannot tell if release {name} is published: {e}")
+        if published is not None:
+            typer.echo(f"    published: {published}")
+        for k, v in obj.items():
+            typer.echo(f"    {k}: {v}")

{calkit_python-0.30.7 → calkit_python-0.30.9}/calkit/cli/main.py

@@ -587,6 +587,9 @@ def save(
             typer.echo(
                 f"Generating commit message for staged files: {staged_files}"
             )
+        if not staged_files:
+            typer.echo("No changes to commit; exiting")
+            raise typer.Exit(0)
         if len(staged_files) != 1:
             raise_error(
                 "Automatic commit messages can only be generated when "
@@ -610,11 +613,12 @@ def save(
         message = typer.prompt("Message")
     # Figure out if we have any DVC files in this commit, and if not, we can
     # skip pushing to DVC
+    staged_files = calkit.git.get_staged_files()
+    if not staged_files:
+        typer.echo("No changes to commit; exiting")
+        raise typer.Exit(0)
     any_dvc = any(
-        [
-            path == "dvc.lock" or path.endswith(".dvc")
-            for path in calkit.git.get_staged_files()
-        ]
+        [path == "dvc.lock" or path.endswith(".dvc") for path in staged_files]
     )
     commit(all=True if paths is None else False, message=message)
     if not no_push: