calkit-python 0.30.2__tar.gz → 0.30.3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (181) hide show
  1. {calkit_python-0.30.2 → calkit_python-0.30.3}/PKG-INFO +1 -1
  2. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/__init__.py +1 -1
  3. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/cli/overleaf.py +5 -0
  4. {calkit_python-0.30.2 → calkit_python-0.30.3}/.github/FUNDING.yml +0 -0
  5. {calkit_python-0.30.2 → calkit_python-0.30.3}/.github/workflows/docs.yml +0 -0
  6. {calkit_python-0.30.2 → calkit_python-0.30.3}/.github/workflows/format.yml +0 -0
  7. {calkit_python-0.30.2 → calkit_python-0.30.3}/.github/workflows/publish-test.yml +0 -0
  8. {calkit_python-0.30.2 → calkit_python-0.30.3}/.github/workflows/publish.yml +0 -0
  9. {calkit_python-0.30.2 → calkit_python-0.30.3}/.github/workflows/test.yml +0 -0
  10. {calkit_python-0.30.2 → calkit_python-0.30.3}/.gitignore +0 -0
  11. {calkit_python-0.30.2 → calkit_python-0.30.3}/.pre-commit-config.yaml +0 -0
  12. {calkit_python-0.30.2 → calkit_python-0.30.3}/.python-version +0 -0
  13. {calkit_python-0.30.2 → calkit_python-0.30.3}/CITATION.cff +0 -0
  14. {calkit_python-0.30.2 → calkit_python-0.30.3}/CONTRIBUTING.md +0 -0
  15. {calkit_python-0.30.2 → calkit_python-0.30.3}/LICENSE +0 -0
  16. {calkit_python-0.30.2 → calkit_python-0.30.3}/Makefile +0 -0
  17. {calkit_python-0.30.2 → calkit_python-0.30.3}/README.md +0 -0
  18. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/__main__.py +0 -0
  19. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/calc.py +0 -0
  20. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/check.py +0 -0
  21. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/cli/__init__.py +0 -0
  22. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/cli/check.py +0 -0
  23. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/cli/cloud.py +0 -0
  24. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/cli/config.py +0 -0
  25. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/cli/core.py +0 -0
  26. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/cli/describe.py +0 -0
  27. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/cli/import_.py +0 -0
  28. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/cli/list.py +0 -0
  29. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/cli/main.py +0 -0
  30. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/cli/new.py +0 -0
  31. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/cli/notebooks.py +0 -0
  32. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/cli/office.py +0 -0
  33. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/cli/slurm.py +0 -0
  34. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/cli/update.py +0 -0
  35. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/cloud.py +0 -0
  36. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/conda.py +0 -0
  37. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/config.py +0 -0
  38. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/core.py +0 -0
  39. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/datasets.py +0 -0
  40. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/docker.py +0 -0
  41. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/dvc.py +0 -0
  42. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/environments.py +0 -0
  43. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/git.py +0 -0
  44. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/github.py +0 -0
  45. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/gui.py +0 -0
  46. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/jupyter.py +0 -0
  47. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/magics.py +0 -0
  48. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/matlab.py +0 -0
  49. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/models/__init__.py +0 -0
  50. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/models/core.py +0 -0
  51. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/models/io.py +0 -0
  52. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/models/iteration.py +0 -0
  53. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/models/pipeline.py +0 -0
  54. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/notebooks.py +0 -0
  55. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/office.py +0 -0
  56. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/ops.py +0 -0
  57. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/pipeline.py +0 -0
  58. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/releases.py +0 -0
  59. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/server.py +0 -0
  60. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/templates/__init__.py +0 -0
  61. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/templates/core.py +0 -0
  62. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/templates/latex/__init__.py +0 -0
  63. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/templates/latex/article/paper.tex +0 -0
  64. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/templates/latex/core.py +0 -0
  65. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/templates/latex/jfm/jfm.bst +0 -0
  66. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/templates/latex/jfm/jfm.cls +0 -0
  67. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/templates/latex/jfm/lineno-FLM.sty +0 -0
  68. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/templates/latex/jfm/paper.tex +0 -0
  69. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/templates/latex/jfm/upmath.sty +0 -0
  70. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/tests/__init__.py +0 -0
  71. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/tests/cli/__init__.py +0 -0
  72. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/tests/cli/test_check.py +0 -0
  73. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/tests/cli/test_config.py +0 -0
  74. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/tests/cli/test_list.py +0 -0
  75. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/tests/cli/test_main.py +0 -0
  76. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/tests/cli/test_new.py +0 -0
  77. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/tests/cli/test_notebooks.py +0 -0
  78. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/tests/models/__init__.py +0 -0
  79. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/tests/models/test_iteration.py +0 -0
  80. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/tests/models/test_pipeline.py +0 -0
  81. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/tests/test_calc.py +0 -0
  82. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/tests/test_check.py +0 -0
  83. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/tests/test_conda.py +0 -0
  84. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/tests/test_core.py +0 -0
  85. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/tests/test_dvc.py +0 -0
  86. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/tests/test_jupyter.py +0 -0
  87. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/tests/test_magics.py +0 -0
  88. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/tests/test_notebooks.py +0 -0
  89. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/tests/test_pipeline.py +0 -0
  90. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/tests/test_templates.py +0 -0
  91. {calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/zenodo.py +0 -0
  92. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/CNAME +0 -0
  93. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/apps.md +0 -0
  94. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/calculations.md +0 -0
  95. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/calkit-yaml.md +0 -0
  96. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/cli-reference.md +0 -0
  97. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/cloud-integration.md +0 -0
  98. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/datasets.md +0 -0
  99. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/dependencies.md +0 -0
  100. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/environments.md +0 -0
  101. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/examples.md +0 -0
  102. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/help.md +0 -0
  103. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/img/c-to-the-k-white.svg +0 -0
  104. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/img/calkit-no-bg.png +0 -0
  105. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/img/connect-zenodo.png +0 -0
  106. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/img/jupyterlab-params.png +0 -0
  107. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/img/vscode-nb-params.png +0 -0
  108. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/index.md +0 -0
  109. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/installation.md +0 -0
  110. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/local-server.md +0 -0
  111. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/notebooks.md +0 -0
  112. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/overleaf.md +0 -0
  113. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/pipeline/index.md +0 -0
  114. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/pipeline/manual-steps.md +0 -0
  115. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/pipeline/running-and-logging.md +0 -0
  116. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/pipeline/slurm.md +0 -0
  117. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/quickstart.md +0 -0
  118. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/references.md +0 -0
  119. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/releases.md +0 -0
  120. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/adding-latex-pub-docker.md +0 -0
  121. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/conda-envs.md +0 -0
  122. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/existing-project.md +0 -0
  123. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/first-project.md +0 -0
  124. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/github-actions.md +0 -0
  125. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/actions-repo-secrets.png +0 -0
  126. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/latex-codespaces/building-codespace.png +0 -0
  127. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/latex-codespaces/codespaces-secrets-2.png +0 -0
  128. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/latex-codespaces/editor-split.png +0 -0
  129. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/latex-codespaces/go-to-linked-code.png +0 -0
  130. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/latex-codespaces/issue-from-selection.png +0 -0
  131. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/latex-codespaces/new-project.png +0 -0
  132. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/latex-codespaces/new-pub-2.png +0 -0
  133. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/latex-codespaces/new-token.png +0 -0
  134. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/latex-codespaces/paper.tex.png +0 -0
  135. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/latex-codespaces/project-home-3.png +0 -0
  136. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/latex-codespaces/push.png +0 -0
  137. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/latex-codespaces/stage.png +0 -0
  138. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/office/anakin-excel.jpg +0 -0
  139. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/office/chart-more-rows.png +0 -0
  140. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/office/create-project.png +0 -0
  141. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/office/elsevier-research-data-guidelines.png +0 -0
  142. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/office/excel-chart.png +0 -0
  143. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/office/excel-data.png +0 -0
  144. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/office/insert-link-to-file.png +0 -0
  145. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/office/needs-clone.png +0 -0
  146. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/office/new-stage.png +0 -0
  147. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/office/phd-comics-version-control.webp +0 -0
  148. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/office/pipeline-out-of-date.png +0 -0
  149. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/office/status-more-rows.png +0 -0
  150. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/office/uncommitted-changes.png +0 -0
  151. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/office/untracked-data.png +0 -0
  152. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/office/updated-publication.png +0 -0
  153. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/office/word-to-pdf-stage-2.png +0 -0
  154. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/office/workflow-page.png +0 -0
  155. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/openfoam/clone.png +0 -0
  156. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/openfoam/create-project.png +0 -0
  157. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/openfoam/datasets-page.png +0 -0
  158. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/openfoam/figure-on-website-updated.png +0 -0
  159. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/openfoam/figure-on-website.png +0 -0
  160. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/openfoam/new-token.png +0 -0
  161. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/openfoam/reclone.png +0 -0
  162. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/openfoam/status-after-import-dataset.png +0 -0
  163. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/quick-actions.png +0 -0
  164. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/img/run-proc.png +0 -0
  165. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/index.md +0 -0
  166. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/latex-codespaces.md +0 -0
  167. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/matlab.md +0 -0
  168. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/notebook-pipeline.md +0 -0
  169. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/office.md +0 -0
  170. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/openfoam.md +0 -0
  171. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/tutorials/procedures.md +0 -0
  172. {calkit_python-0.30.2 → calkit_python-0.30.3}/docs/version-control.md +0 -0
  173. {calkit_python-0.30.2 → calkit_python-0.30.3}/mkdocs.yml +0 -0
  174. {calkit_python-0.30.2 → calkit_python-0.30.3}/pyproject.toml +0 -0
  175. {calkit_python-0.30.2 → calkit_python-0.30.3}/scripts/install.ps1 +0 -0
  176. {calkit_python-0.30.2 → calkit_python-0.30.3}/scripts/install.sh +0 -0
  177. {calkit_python-0.30.2 → calkit_python-0.30.3}/test/nb-params.ipynb +0 -0
  178. {calkit_python-0.30.2 → calkit_python-0.30.3}/test/nb-subdir.ipynb +0 -0
  179. {calkit_python-0.30.2 → calkit_python-0.30.3}/test/pipeline.ipynb +0 -0
  180. {calkit_python-0.30.2 → calkit_python-0.30.3}/test/test-log.log +0 -0
  181. {calkit_python-0.30.2 → calkit_python-0.30.3}/uv.lock +0 -0
{calkit_python-0.30.2 → calkit_python-0.30.3}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: calkit-python
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- Version: 0.30.2
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+ Version: 0.30.3
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  Summary: Reproducibility simplified.
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  Project-URL: Homepage, https://calkit.org
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  Project-URL: Issues, https://github.com/calkit/calkit/issues
{calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/__init__.py RENAMED
@@ -1,4 +1,4 @@
1
- __version__ = "0.30.2"
1
+ __version__ = "0.30.3"
2
2
 
3
3
  from .core import * # noqa: F403, I001
4
4
  from . import git # noqa: F401
{calkit_python-0.30.2 → calkit_python-0.30.3}/calkit/cli/overleaf.py RENAMED
@@ -479,6 +479,11 @@ def sync(
479
479
  # Copy the file
480
480
  os.makedirs(os.path.dirname(dst), exist_ok=True)
481
481
  shutil.copy2(src, dst)
482
+ elif os.path.isfile(dst) and not os.path.isfile(src):
483
+ # Handle newly created files on Overleaf, i.e., they exist
484
+ # in dst but not in src
485
+ os.makedirs(os.path.dirname(src), exist_ok=True)
486
+ shutil.copy2(dst, src)
482
487
  else:
483
488
  raise_error(
484
489
  f"Source path {src} does not exist; "
{calkit_python-0.30.2 → calkit_python-0.30.3}/LICENSE RENAMED
File without changes
{calkit_python-0.30.2 → calkit_python-0.30.3}/Makefile RENAMED
File without changes
{calkit_python-0.30.2 → calkit_python-0.30.3}/README.md RENAMED
File without changes
{calkit_python-0.30.2 → calkit_python-0.30.3}/uv.lock RENAMED
File without changes