calkit-python 0.26.8__tar.gz → 0.26.9__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (170) hide show
  1. {calkit_python-0.26.8 → calkit_python-0.26.9}/PKG-INFO +1 -1
  2. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/__init__.py +1 -1
  3. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/models/pipeline.py +8 -5
  4. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/pipeline.py +1 -1
  5. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/tests/models/test_pipeline.py +36 -0
  6. {calkit_python-0.26.8 → calkit_python-0.26.9}/.github/FUNDING.yml +0 -0
  7. {calkit_python-0.26.8 → calkit_python-0.26.9}/.github/workflows/docs.yml +0 -0
  8. {calkit_python-0.26.8 → calkit_python-0.26.9}/.github/workflows/format.yml +0 -0
  9. {calkit_python-0.26.8 → calkit_python-0.26.9}/.github/workflows/publish-test.yml +0 -0
  10. {calkit_python-0.26.8 → calkit_python-0.26.9}/.github/workflows/publish.yml +0 -0
  11. {calkit_python-0.26.8 → calkit_python-0.26.9}/.github/workflows/test.yml +0 -0
  12. {calkit_python-0.26.8 → calkit_python-0.26.9}/.gitignore +0 -0
  13. {calkit_python-0.26.8 → calkit_python-0.26.9}/.pre-commit-config.yaml +0 -0
  14. {calkit_python-0.26.8 → calkit_python-0.26.9}/.python-version +0 -0
  15. {calkit_python-0.26.8 → calkit_python-0.26.9}/CONTRIBUTING.md +0 -0
  16. {calkit_python-0.26.8 → calkit_python-0.26.9}/LICENSE +0 -0
  17. {calkit_python-0.26.8 → calkit_python-0.26.9}/Makefile +0 -0
  18. {calkit_python-0.26.8 → calkit_python-0.26.9}/README.md +0 -0
  19. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/__main__.py +0 -0
  20. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/calc.py +0 -0
  21. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/check.py +0 -0
  22. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/cli/__init__.py +0 -0
  23. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/cli/check.py +0 -0
  24. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/cli/cloud.py +0 -0
  25. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/cli/config.py +0 -0
  26. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/cli/core.py +0 -0
  27. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/cli/describe.py +0 -0
  28. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/cli/import_.py +0 -0
  29. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/cli/list.py +0 -0
  30. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/cli/main.py +0 -0
  31. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/cli/new.py +0 -0
  32. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/cli/notebooks.py +0 -0
  33. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/cli/office.py +0 -0
  34. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/cli/overleaf.py +0 -0
  35. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/cli/update.py +0 -0
  36. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/cloud.py +0 -0
  37. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/conda.py +0 -0
  38. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/config.py +0 -0
  39. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/core.py +0 -0
  40. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/datasets.py +0 -0
  41. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/docker.py +0 -0
  42. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/dvc.py +0 -0
  43. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/environments.py +0 -0
  44. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/git.py +0 -0
  45. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/github.py +0 -0
  46. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/gui.py +0 -0
  47. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/jupyter.py +0 -0
  48. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/magics.py +0 -0
  49. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/matlab.py +0 -0
  50. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/models/__init__.py +0 -0
  51. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/models/core.py +0 -0
  52. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/models/io.py +0 -0
  53. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/models/iteration.py +0 -0
  54. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/notebooks.py +0 -0
  55. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/office.py +0 -0
  56. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/ops.py +0 -0
  57. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/releases.py +0 -0
  58. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/server.py +0 -0
  59. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/templates/__init__.py +0 -0
  60. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/templates/core.py +0 -0
  61. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/templates/latex/__init__.py +0 -0
  62. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/templates/latex/article/paper.tex +0 -0
  63. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/templates/latex/core.py +0 -0
  64. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/templates/latex/jfm/jfm.bst +0 -0
  65. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/templates/latex/jfm/jfm.cls +0 -0
  66. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/templates/latex/jfm/lineno-FLM.sty +0 -0
  67. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/templates/latex/jfm/paper.tex +0 -0
  68. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/templates/latex/jfm/upmath.sty +0 -0
  69. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/tests/__init__.py +0 -0
  70. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/tests/cli/__init__.py +0 -0
  71. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/tests/cli/test_check.py +0 -0
  72. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/tests/cli/test_config.py +0 -0
  73. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/tests/cli/test_list.py +0 -0
  74. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/tests/cli/test_main.py +0 -0
  75. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/tests/cli/test_new.py +0 -0
  76. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/tests/cli/test_notebooks.py +0 -0
  77. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/tests/models/__init__.py +0 -0
  78. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/tests/test_calc.py +0 -0
  79. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/tests/test_check.py +0 -0
  80. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/tests/test_conda.py +0 -0
  81. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/tests/test_core.py +0 -0
  82. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/tests/test_dvc.py +0 -0
  83. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/tests/test_jupyter.py +0 -0
  84. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/tests/test_magics.py +0 -0
  85. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/tests/test_notebooks.py +0 -0
  86. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/tests/test_pipeline.py +0 -0
  87. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/tests/test_templates.py +0 -0
  88. {calkit_python-0.26.8 → calkit_python-0.26.9}/calkit/zenodo.py +0 -0
  89. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/CNAME +0 -0
  90. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/apps.md +0 -0
  91. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/calculations.md +0 -0
  92. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/calkit-yaml.md +0 -0
  93. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/cli-reference.md +0 -0
  94. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/cloud-integration.md +0 -0
  95. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/datasets.md +0 -0
  96. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/dependencies.md +0 -0
  97. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/environments.md +0 -0
  98. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/examples.md +0 -0
  99. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/help.md +0 -0
  100. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/img/c-to-the-k-white.svg +0 -0
  101. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/img/calkit-no-bg.png +0 -0
  102. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/img/connect-zenodo.png +0 -0
  103. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/index.md +0 -0
  104. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/installation.md +0 -0
  105. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/local-server.md +0 -0
  106. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/notebooks.md +0 -0
  107. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/overleaf.md +0 -0
  108. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/pipeline/index.md +0 -0
  109. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/pipeline/manual-steps.md +0 -0
  110. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/pipeline/running-and-logging.md +0 -0
  111. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/quickstart.md +0 -0
  112. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/references.md +0 -0
  113. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/releases.md +0 -0
  114. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/adding-latex-pub-docker.md +0 -0
  115. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/conda-envs.md +0 -0
  116. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/existing-project.md +0 -0
  117. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/first-project.md +0 -0
  118. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/latex-codespaces/building-codespace.png +0 -0
  119. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/latex-codespaces/codespaces-secrets-2.png +0 -0
  120. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/latex-codespaces/editor-split.png +0 -0
  121. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/latex-codespaces/go-to-linked-code.png +0 -0
  122. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/latex-codespaces/issue-from-selection.png +0 -0
  123. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/latex-codespaces/new-project.png +0 -0
  124. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/latex-codespaces/new-pub-2.png +0 -0
  125. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/latex-codespaces/new-token.png +0 -0
  126. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/latex-codespaces/paper.tex.png +0 -0
  127. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/latex-codespaces/project-home-3.png +0 -0
  128. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/latex-codespaces/push.png +0 -0
  129. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/latex-codespaces/stage.png +0 -0
  130. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/office/anakin-excel.jpg +0 -0
  131. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/office/chart-more-rows.png +0 -0
  132. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/office/create-project.png +0 -0
  133. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/office/elsevier-research-data-guidelines.png +0 -0
  134. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/office/excel-chart.png +0 -0
  135. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/office/excel-data.png +0 -0
  136. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/office/insert-link-to-file.png +0 -0
  137. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/office/needs-clone.png +0 -0
  138. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/office/new-stage.png +0 -0
  139. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/office/phd-comics-version-control.webp +0 -0
  140. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/office/pipeline-out-of-date.png +0 -0
  141. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/office/status-more-rows.png +0 -0
  142. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/office/uncommitted-changes.png +0 -0
  143. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/office/untracked-data.png +0 -0
  144. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/office/updated-publication.png +0 -0
  145. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/office/word-to-pdf-stage-2.png +0 -0
  146. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/office/workflow-page.png +0 -0
  147. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/openfoam/clone.png +0 -0
  148. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/openfoam/create-project.png +0 -0
  149. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/openfoam/datasets-page.png +0 -0
  150. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/openfoam/figure-on-website-updated.png +0 -0
  151. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/openfoam/figure-on-website.png +0 -0
  152. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/openfoam/new-token.png +0 -0
  153. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/openfoam/reclone.png +0 -0
  154. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/openfoam/status-after-import-dataset.png +0 -0
  155. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/img/run-proc.png +0 -0
  156. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/index.md +0 -0
  157. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/latex-codespaces.md +0 -0
  158. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/matlab.md +0 -0
  159. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/notebook-pipeline.md +0 -0
  160. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/office.md +0 -0
  161. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/openfoam.md +0 -0
  162. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/tutorials/procedures.md +0 -0
  163. {calkit_python-0.26.8 → calkit_python-0.26.9}/docs/version-control.md +0 -0
  164. {calkit_python-0.26.8 → calkit_python-0.26.9}/mkdocs.yml +0 -0
  165. {calkit_python-0.26.8 → calkit_python-0.26.9}/pyproject.toml +0 -0
  166. {calkit_python-0.26.8 → calkit_python-0.26.9}/scripts/install.ps1 +0 -0
  167. {calkit_python-0.26.8 → calkit_python-0.26.9}/scripts/install.sh +0 -0
  168. {calkit_python-0.26.8 → calkit_python-0.26.9}/test/pipeline.ipynb +0 -0
  169. {calkit_python-0.26.8 → calkit_python-0.26.9}/test/test-log.log +0 -0
  170. {calkit_python-0.26.8 → calkit_python-0.26.9}/uv.lock +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: calkit-python
3
- Version: 0.26.8
3
+ Version: 0.26.9
4
4
  Summary: Reproducibility simplified.
5
5
  Project-URL: Homepage, https://calkit.org
6
6
  Project-URL: Issues, https://github.com/calkit/calkit/issues
@@ -1,4 +1,4 @@
1
- __version__ = "0.26.8"
1
+ __version__ = "0.26.9"
2
2
 
3
3
  from .core import * # noqa: F403, I001
4
4
  from . import git # noqa: F401
@@ -306,11 +306,14 @@ class JupyterNotebookStage(Stage):
306
306
  def dvc_outs(self) -> list[str | dict]:
307
307
  outs = super().dvc_outs
308
308
  exec_nb_path = self.executed_notebook_path
309
- html_path = self.html_path
310
- outs = outs + [
311
- {exec_nb_path: {"cache": self.executed_ipynb_storage == "dvc"}},
312
- {html_path: {"cache": self.html_storage == "dvc"}},
313
- ]
309
+ outs.append(
310
+ {exec_nb_path: {"cache": self.executed_ipynb_storage == "dvc"}}
311
+ )
312
+ if self.html_storage:
313
+ html_path = self.html_path
314
+ outs.append(
315
+ {html_path: {"cache": self.html_storage == "dvc"}},
316
+ )
314
317
  return outs
315
318
 
316
319
  @property
@@ -70,7 +70,7 @@ def to_dvc(
70
70
  deps += env["deps"]
71
71
  outs.append({lock_fpath: dict(cache=False, persist=True)})
72
72
  stage = dict(cmd=cmd, deps=deps, outs=outs, always_changed=True)
73
- stage["desc"] = (
73
+ stage["desc"] = ( # type: ignore
74
74
  "Automatically generated by Calkit. "
75
75
  "Changes made here will be overwritten."
76
76
  )
@@ -1,6 +1,7 @@
1
1
  """Tests for ``calkit.models.pipeline``."""
2
2
 
3
3
  from calkit.models.pipeline import (
4
+ JupyterNotebookStage,
4
5
  LatexStage,
5
6
  PythonScriptStage,
6
7
  WordToPdfStage,
@@ -51,3 +52,38 @@ def test_latexstage():
51
52
  assert " -silent " not in s.dvc_cmd
52
53
  assert "my-paper.tex" in s.dvc_deps
53
54
  assert "my-paper.pdf" in s.dvc_outs
55
+
56
+
57
+ def test_jupyternotebookstage():
58
+ def dvc_outs_to_str_list(dvc_stage) -> list[str]:
59
+ outs = []
60
+ for out in dvc_stage["outs"]:
61
+ if isinstance(out, dict):
62
+ outs.append(list(out.keys())[0])
63
+ else:
64
+ outs.append(out)
65
+ return outs
66
+
67
+ s = JupyterNotebookStage(
68
+ environment="main",
69
+ notebook_path="something.ipynb",
70
+ inputs=["file.txt"],
71
+ html_storage="git",
72
+ )
73
+ dvc_stage = s.to_dvc()
74
+ outs = dvc_outs_to_str_list(dvc_stage)
75
+ assert s.html_path in outs
76
+ assert s.executed_notebook_path in outs
77
+ assert "html" in dvc_stage["cmd"]
78
+ assert "file.txt" in dvc_stage["deps"]
79
+ s = JupyterNotebookStage(
80
+ environment="main",
81
+ notebook_path="something.ipynb",
82
+ inputs=["file.txt"],
83
+ html_storage=None,
84
+ )
85
+ dvc_stage = s.to_dvc()
86
+ outs = dvc_outs_to_str_list(dvc_stage)
87
+ assert s.html_path not in outs
88
+ assert s.executed_notebook_path in outs
89
+ assert "html" not in dvc_stage["cmd"]
File without changes
File without changes
File without changes
File without changes