calkit-python 0.23.0__tar.gz → 0.23.1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (158) hide show
  1. {calkit_python-0.23.0 → calkit_python-0.23.1}/PKG-INFO +1 -1
  2. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/__init__.py +1 -1
  3. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/dvc.py +11 -7
  4. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/pipeline.py +4 -2
  5. calkit_python-0.23.1/calkit/tests/test_dvc.py +37 -0
  6. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/pipeline/index.md +2 -2
  7. calkit_python-0.23.0/calkit/tests/test_dvc.py +0 -23
  8. {calkit_python-0.23.0 → calkit_python-0.23.1}/.github/FUNDING.yml +0 -0
  9. {calkit_python-0.23.0 → calkit_python-0.23.1}/.github/workflows/docs.yml +0 -0
  10. {calkit_python-0.23.0 → calkit_python-0.23.1}/.github/workflows/format.yml +0 -0
  11. {calkit_python-0.23.0 → calkit_python-0.23.1}/.github/workflows/publish-test.yml +0 -0
  12. {calkit_python-0.23.0 → calkit_python-0.23.1}/.github/workflows/publish.yml +0 -0
  13. {calkit_python-0.23.0 → calkit_python-0.23.1}/.github/workflows/test.yml +0 -0
  14. {calkit_python-0.23.0 → calkit_python-0.23.1}/.gitignore +0 -0
  15. {calkit_python-0.23.0 → calkit_python-0.23.1}/.pre-commit-config.yaml +0 -0
  16. {calkit_python-0.23.0 → calkit_python-0.23.1}/.python-version +0 -0
  17. {calkit_python-0.23.0 → calkit_python-0.23.1}/CONTRIBUTING.md +0 -0
  18. {calkit_python-0.23.0 → calkit_python-0.23.1}/LICENSE +0 -0
  19. {calkit_python-0.23.0 → calkit_python-0.23.1}/Makefile +0 -0
  20. {calkit_python-0.23.0 → calkit_python-0.23.1}/README.md +0 -0
  21. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/__main__.py +0 -0
  22. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/calc.py +0 -0
  23. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/check.py +0 -0
  24. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/cli/__init__.py +0 -0
  25. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/cli/check.py +0 -0
  26. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/cli/cloud.py +0 -0
  27. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/cli/config.py +0 -0
  28. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/cli/core.py +0 -0
  29. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/cli/import_.py +0 -0
  30. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/cli/list.py +0 -0
  31. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/cli/main.py +0 -0
  32. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/cli/new.py +0 -0
  33. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/cli/notebooks.py +0 -0
  34. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/cli/office.py +0 -0
  35. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/cli/overleaf.py +0 -0
  36. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/cli/update.py +0 -0
  37. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/cloud.py +0 -0
  38. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/conda.py +0 -0
  39. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/config.py +0 -0
  40. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/core.py +0 -0
  41. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/datasets.py +0 -0
  42. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/docker.py +0 -0
  43. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/environments.py +0 -0
  44. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/git.py +0 -0
  45. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/github.py +0 -0
  46. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/gui.py +0 -0
  47. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/jupyter.py +0 -0
  48. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/magics.py +0 -0
  49. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/matlab.py +0 -0
  50. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/models/__init__.py +0 -0
  51. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/models/core.py +0 -0
  52. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/models/iteration.py +0 -0
  53. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/models/pipeline.py +0 -0
  54. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/office.py +0 -0
  55. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/ops.py +0 -0
  56. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/releases.py +0 -0
  57. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/server.py +0 -0
  58. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/templates/__init__.py +0 -0
  59. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/templates/core.py +0 -0
  60. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/templates/latex/__init__.py +0 -0
  61. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/templates/latex/article/paper.tex +0 -0
  62. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/templates/latex/core.py +0 -0
  63. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/templates/latex/jfm/jfm.bst +0 -0
  64. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/templates/latex/jfm/jfm.cls +0 -0
  65. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/templates/latex/jfm/lineno-FLM.sty +0 -0
  66. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/templates/latex/jfm/paper.tex +0 -0
  67. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/templates/latex/jfm/upmath.sty +0 -0
  68. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/tests/__init__.py +0 -0
  69. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/tests/cli/__init__.py +0 -0
  70. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/tests/cli/test_config.py +0 -0
  71. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/tests/cli/test_list.py +0 -0
  72. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/tests/cli/test_main.py +0 -0
  73. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/tests/cli/test_new.py +0 -0
  74. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/tests/models/__init__.py +0 -0
  75. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/tests/models/test_pipeline.py +0 -0
  76. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/tests/test_calc.py +0 -0
  77. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/tests/test_check.py +0 -0
  78. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/tests/test_conda.py +0 -0
  79. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/tests/test_core.py +0 -0
  80. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/tests/test_jupyter.py +0 -0
  81. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/tests/test_magics.py +0 -0
  82. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/tests/test_pipeline.py +0 -0
  83. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/tests/test_templates.py +0 -0
  84. {calkit_python-0.23.0 → calkit_python-0.23.1}/calkit/zenodo.py +0 -0
  85. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/CNAME +0 -0
  86. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/apps.md +0 -0
  87. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/calculations.md +0 -0
  88. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/calkit-yaml.md +0 -0
  89. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/cli-reference.md +0 -0
  90. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/cloud-integration.md +0 -0
  91. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/datasets.md +0 -0
  92. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/environments.md +0 -0
  93. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/examples.md +0 -0
  94. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/help.md +0 -0
  95. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/img/c-to-the-k-white.svg +0 -0
  96. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/img/calkit-no-bg.png +0 -0
  97. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/img/connect-zenodo.png +0 -0
  98. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/index.md +0 -0
  99. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/installation.md +0 -0
  100. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/local-server.md +0 -0
  101. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/overleaf.md +0 -0
  102. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/pipeline/manual-steps.md +0 -0
  103. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/references.md +0 -0
  104. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/releases.md +0 -0
  105. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/adding-latex-pub-docker.md +0 -0
  106. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/conda-envs.md +0 -0
  107. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/existing-project.md +0 -0
  108. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/first-project.md +0 -0
  109. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/latex-codespaces/building-codespace.png +0 -0
  110. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/latex-codespaces/codespaces-secrets-2.png +0 -0
  111. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/latex-codespaces/editor-split.png +0 -0
  112. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/latex-codespaces/go-to-linked-code.png +0 -0
  113. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/latex-codespaces/issue-from-selection.png +0 -0
  114. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/latex-codespaces/new-project.png +0 -0
  115. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/latex-codespaces/new-pub-2.png +0 -0
  116. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/latex-codespaces/new-token.png +0 -0
  117. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/latex-codespaces/paper.tex.png +0 -0
  118. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/latex-codespaces/project-home-3.png +0 -0
  119. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/latex-codespaces/push.png +0 -0
  120. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/latex-codespaces/stage.png +0 -0
  121. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/office/anakin-excel.jpg +0 -0
  122. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/office/chart-more-rows.png +0 -0
  123. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/office/create-project.png +0 -0
  124. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/office/elsevier-research-data-guidelines.png +0 -0
  125. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/office/excel-chart.png +0 -0
  126. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/office/excel-data.png +0 -0
  127. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/office/insert-link-to-file.png +0 -0
  128. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/office/needs-clone.png +0 -0
  129. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/office/new-stage.png +0 -0
  130. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/office/phd-comics-version-control.webp +0 -0
  131. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/office/pipeline-out-of-date.png +0 -0
  132. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/office/status-more-rows.png +0 -0
  133. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/office/uncommitted-changes.png +0 -0
  134. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/office/untracked-data.png +0 -0
  135. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/office/updated-publication.png +0 -0
  136. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/office/word-to-pdf-stage-2.png +0 -0
  137. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/office/workflow-page.png +0 -0
  138. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/openfoam/clone.png +0 -0
  139. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/openfoam/create-project.png +0 -0
  140. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/openfoam/datasets-page.png +0 -0
  141. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/openfoam/figure-on-website-updated.png +0 -0
  142. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/openfoam/figure-on-website.png +0 -0
  143. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/openfoam/new-token.png +0 -0
  144. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/openfoam/reclone.png +0 -0
  145. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/openfoam/status-after-import-dataset.png +0 -0
  146. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/img/run-proc.png +0 -0
  147. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/index.md +0 -0
  148. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/latex-codespaces.md +0 -0
  149. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/matlab.md +0 -0
  150. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/notebook-pipeline.md +0 -0
  151. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/office.md +0 -0
  152. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/openfoam.md +0 -0
  153. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/tutorials/procedures.md +0 -0
  154. {calkit_python-0.23.0 → calkit_python-0.23.1}/docs/version-control.md +0 -0
  155. {calkit_python-0.23.0 → calkit_python-0.23.1}/mkdocs.yml +0 -0
  156. {calkit_python-0.23.0 → calkit_python-0.23.1}/pyproject.toml +0 -0
  157. {calkit_python-0.23.0 → calkit_python-0.23.1}/test/pipeline.ipynb +0 -0
  158. {calkit_python-0.23.0 → calkit_python-0.23.1}/uv.lock +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: calkit-python
3
- Version: 0.23.0
3
+ Version: 0.23.1
4
4
  Summary: Reproducibility simplified.
5
5
  Project-URL: Homepage, https://calkit.org
6
6
  Project-URL: Issues, https://github.com/calkit/calkit/issues
@@ -1,4 +1,4 @@
1
- __version__ = "0.23.0"
1
+ __version__ = "0.23.1"
2
2
 
3
3
  from .core import * # noqa: F403, I001
4
4
  from . import git # noqa: F401
@@ -155,7 +155,7 @@ def read_pipeline(wdir: str = ".") -> dict:
155
155
  return calkit.ryaml.load(f)
156
156
 
157
157
 
158
- def get_remotes(wdir: str = None) -> dict[str, str]:
158
+ def get_remotes(wdir: str | None = None) -> dict[str, str]:
159
159
  """Get a dictionary of DVC remotes, keyed by name, with URL as the
160
160
  value.
161
161
  """
@@ -169,13 +169,17 @@ def get_remotes(wdir: str = None) -> dict[str, str]:
169
169
  if not out:
170
170
  return {}
171
171
  resp = {}
172
- for line in out.split("\n"):
173
- split_line = line.split()
174
- if len(split_line) >= 2:
175
- # This is a remote
176
- name = split_line[0]
177
- url = split_line[1]
172
+ out = out.replace("(default)", "").strip()
173
+ is_name = True
174
+ for token in out.split():
175
+ token = token.strip()
176
+ print(token)
177
+ if is_name:
178
+ name = token
179
+ else:
180
+ url = token
178
181
  resp[name] = url
182
+ is_name = not is_name
179
183
  return resp
180
184
 
181
185
 
@@ -192,9 +192,11 @@ def to_dvc(
192
192
  str(var_val),
193
193
  )
194
194
  extra_outs.append(out_i)
195
- extra_outs = list(set(extra_outs))
196
195
  for out_i in extra_outs:
197
- dvc_stages[stage_name]["deps"].append(out_i)
196
+ if out_i not in dvc_stages[stage_name]["deps"]:
197
+ dvc_stages[stage_name]["deps"].append(
198
+ out_i
199
+ )
198
200
  else:
199
201
  dvc_stages[stage_name]["deps"].append(out)
200
202
  if write:
@@ -0,0 +1,37 @@
1
+ """Tests for the ``dvc`` module."""
2
+
3
+ import subprocess
4
+
5
+ import calkit
6
+
7
+
8
+ def test_get_remotes(tmp_dir):
9
+ subprocess.call(["git", "init"])
10
+ assert not calkit.dvc.get_remotes()
11
+ subprocess.call(["dvc", "init"])
12
+ assert not calkit.dvc.get_remotes()
13
+ subprocess.call(
14
+ [
15
+ "dvc",
16
+ "remote",
17
+ "add",
18
+ "something",
19
+ "https://sup.com",
20
+ ]
21
+ )
22
+ subprocess.call(
23
+ [
24
+ "dvc",
25
+ "remote",
26
+ "add",
27
+ "something-very-long-remote-that-will-be-more-than-one-line",
28
+ "https://sup.com/this/is/a/long/remote/url/so/test/this",
29
+ ]
30
+ )
31
+ resp = calkit.dvc.get_remotes()
32
+ assert resp == {
33
+ "something": "https://sup.com",
34
+ "something-very-long-remote-that-will-be-more-than-one-line": (
35
+ "https://sup.com/this/is/a/long/remote/url/so/test/this"
36
+ ),
37
+ }
@@ -37,8 +37,8 @@ pipeline:
37
37
  environment: main
38
38
  outputs:
39
39
  - data/raw.csv
40
- - path: data/raw.csv
41
- storage: dvc
40
+ - path: data/meta.json
41
+ storage: git
42
42
  delete_before_run: false
43
43
  ```
44
44
 
@@ -1,23 +0,0 @@
1
- """Tests for the ``dvc`` module."""
2
-
3
- import subprocess
4
-
5
- import calkit
6
-
7
-
8
- def test_get_remotes(tmp_dir):
9
- subprocess.call(["git", "init"])
10
- assert not calkit.dvc.get_remotes()
11
- subprocess.call(["dvc", "init"])
12
- assert not calkit.dvc.get_remotes()
13
- subprocess.call(
14
- [
15
- "dvc",
16
- "remote",
17
- "add",
18
- "something",
19
- "https://sup.com",
20
- ]
21
- )
22
- resp = calkit.dvc.get_remotes()
23
- assert resp == {"something": "https://sup.com"}
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