calkit-python 0.17.4__tar.gz → 0.17.5__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (130) hide show
  1. {calkit_python-0.17.4 → calkit_python-0.17.5}/PKG-INFO +1 -1
  2. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/__init__.py +1 -1
  3. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/cli/config.py +18 -1
  4. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/calkit-yaml.md +2 -0
  5. {calkit_python-0.17.4 → calkit_python-0.17.5}/.github/FUNDING.yml +0 -0
  6. {calkit_python-0.17.4 → calkit_python-0.17.5}/.github/workflows/docs.yml +0 -0
  7. {calkit_python-0.17.4 → calkit_python-0.17.5}/.github/workflows/publish-test.yml +0 -0
  8. {calkit_python-0.17.4 → calkit_python-0.17.5}/.github/workflows/publish.yml +0 -0
  9. {calkit_python-0.17.4 → calkit_python-0.17.5}/.gitignore +0 -0
  10. {calkit_python-0.17.4 → calkit_python-0.17.5}/LICENSE +0 -0
  11. {calkit_python-0.17.4 → calkit_python-0.17.5}/README.md +0 -0
  12. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/__main__.py +0 -0
  13. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/calc.py +0 -0
  14. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/check.py +0 -0
  15. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/cli/__init__.py +0 -0
  16. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/cli/check.py +0 -0
  17. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/cli/core.py +0 -0
  18. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/cli/import_.py +0 -0
  19. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/cli/list.py +0 -0
  20. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/cli/main.py +0 -0
  21. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/cli/new.py +0 -0
  22. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/cli/notebooks.py +0 -0
  23. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/cli/office.py +0 -0
  24. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/cli/update.py +0 -0
  25. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/cloud.py +0 -0
  26. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/conda.py +0 -0
  27. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/config.py +0 -0
  28. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/core.py +0 -0
  29. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/datasets.py +0 -0
  30. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/docker.py +0 -0
  31. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/dvc.py +0 -0
  32. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/git.py +0 -0
  33. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/gui.py +0 -0
  34. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/jupyter.py +0 -0
  35. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/magics.py +0 -0
  36. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/models.py +0 -0
  37. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/office.py +0 -0
  38. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/ops.py +0 -0
  39. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/server.py +0 -0
  40. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/templates/__init__.py +0 -0
  41. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/templates/core.py +0 -0
  42. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/templates/latex/__init__.py +0 -0
  43. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/templates/latex/article/paper.tex +0 -0
  44. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/templates/latex/core.py +0 -0
  45. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/templates/latex/jfm/jfm.bst +0 -0
  46. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/templates/latex/jfm/jfm.cls +0 -0
  47. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/templates/latex/jfm/lineno-FLM.sty +0 -0
  48. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/templates/latex/jfm/paper.tex +0 -0
  49. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/templates/latex/jfm/upmath.sty +0 -0
  50. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/tests/__init__.py +0 -0
  51. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/tests/cli/__init__.py +0 -0
  52. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/tests/cli/test_list.py +0 -0
  53. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/tests/cli/test_main.py +0 -0
  54. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/tests/cli/test_new.py +0 -0
  55. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/tests/test_calc.py +0 -0
  56. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/tests/test_check.py +0 -0
  57. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/tests/test_conda.py +0 -0
  58. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/tests/test_core.py +0 -0
  59. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/tests/test_dvc.py +0 -0
  60. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/tests/test_jupyter.py +0 -0
  61. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/tests/test_magics.py +0 -0
  62. {calkit_python-0.17.4 → calkit_python-0.17.5}/calkit/tests/test_templates.py +0 -0
  63. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/CNAME +0 -0
  64. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/apps.md +0 -0
  65. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/calculations.md +0 -0
  66. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/cli-reference.md +0 -0
  67. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/cloud-integration.md +0 -0
  68. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/environments.md +0 -0
  69. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/examples.md +0 -0
  70. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/help.md +0 -0
  71. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/img/c-to-the-k-white.svg +0 -0
  72. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/img/calkit-no-bg.png +0 -0
  73. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/index.md +0 -0
  74. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/installation.md +0 -0
  75. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/local-server.md +0 -0
  76. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/pipeline/index.md +0 -0
  77. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/pipeline/manual-steps.md +0 -0
  78. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/references.md +0 -0
  79. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/adding-latex-pub-docker.md +0 -0
  80. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/conda-envs.md +0 -0
  81. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/first-project.md +0 -0
  82. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/latex-codespaces/building-codespace.png +0 -0
  83. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/latex-codespaces/codespaces-secrets-2.png +0 -0
  84. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/latex-codespaces/editor-split.png +0 -0
  85. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/latex-codespaces/go-to-linked-code.png +0 -0
  86. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/latex-codespaces/issue-from-selection.png +0 -0
  87. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/latex-codespaces/new-project.png +0 -0
  88. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/latex-codespaces/new-pub-2.png +0 -0
  89. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/latex-codespaces/new-token.png +0 -0
  90. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/latex-codespaces/paper.tex.png +0 -0
  91. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/latex-codespaces/project-home-3.png +0 -0
  92. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/latex-codespaces/push.png +0 -0
  93. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/latex-codespaces/stage.png +0 -0
  94. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/office/anakin-excel.jpg +0 -0
  95. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/office/chart-more-rows.png +0 -0
  96. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/office/create-project.png +0 -0
  97. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/office/elsevier-research-data-guidelines.png +0 -0
  98. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/office/excel-chart.png +0 -0
  99. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/office/excel-data.png +0 -0
  100. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/office/insert-link-to-file.png +0 -0
  101. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/office/needs-clone.png +0 -0
  102. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/office/new-stage.png +0 -0
  103. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/office/phd-comics-version-control.webp +0 -0
  104. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/office/pipeline-out-of-date.png +0 -0
  105. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/office/status-more-rows.png +0 -0
  106. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/office/uncommitted-changes.png +0 -0
  107. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/office/untracked-data.png +0 -0
  108. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/office/updated-publication.png +0 -0
  109. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/office/word-to-pdf-stage-2.png +0 -0
  110. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/office/workflow-page.png +0 -0
  111. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/openfoam/clone.png +0 -0
  112. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/openfoam/create-project.png +0 -0
  113. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/openfoam/datasets-page.png +0 -0
  114. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/openfoam/figure-on-website-updated.png +0 -0
  115. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/openfoam/figure-on-website.png +0 -0
  116. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/openfoam/new-token.png +0 -0
  117. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/openfoam/reclone.png +0 -0
  118. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/openfoam/status-after-import-dataset.png +0 -0
  119. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/img/run-proc.png +0 -0
  120. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/latex-codespaces.md +0 -0
  121. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/matlab.md +0 -0
  122. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/notebook-pipeline.md +0 -0
  123. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/office.md +0 -0
  124. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/openfoam.md +0 -0
  125. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/tutorials/procedures.md +0 -0
  126. {calkit_python-0.17.4 → calkit_python-0.17.5}/docs/version-control.md +0 -0
  127. {calkit_python-0.17.4 → calkit_python-0.17.5}/mkdocs.yml +0 -0
  128. {calkit_python-0.17.4 → calkit_python-0.17.5}/pyproject.toml +0 -0
  129. {calkit_python-0.17.4 → calkit_python-0.17.5}/test/pipeline.ipynb +0 -0
  130. {calkit_python-0.17.4 → calkit_python-0.17.5}/uv.lock +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: calkit-python
3
- Version: 0.17.4
3
+ Version: 0.17.5
4
4
  Summary: Reproducibility simplified.
5
5
  Project-URL: Homepage, https://calkit.org
6
6
  Project-URL: Issues, https://github.com/calkit/calkit/issues
@@ -1,4 +1,4 @@
1
- __version__ = "0.17.4"
1
+ __version__ = "0.17.5"
2
2
 
3
3
  from .core import *
4
4
  from . import git
@@ -4,9 +4,12 @@ from __future__ import annotations
4
4
 
5
5
  import subprocess
6
6
 
7
+ import git
7
8
  import typer
8
9
  from git.exc import InvalidGitRepositoryError
10
+ from typing_extensions import Annotated
9
11
 
12
+ import calkit
10
13
  from calkit import config
11
14
  from calkit.cli.core import raise_error
12
15
  from calkit.dvc import configure_remote, get_remotes, set_remote_auth
@@ -44,7 +47,14 @@ def get_config_value(key: str) -> None:
44
47
 
45
48
  @config_app.command(name="setup-remote", help="Alias for 'remote'.")
46
49
  @config_app.command(name="remote")
47
- def setup_remote():
50
+ def setup_remote(
51
+ no_commit: Annotated[
52
+ bool,
53
+ typer.Option(
54
+ "--no-commit", help="Do not commit changes to DVC config."
55
+ ),
56
+ ] = False,
57
+ ):
48
58
  """Setup the Calkit cloud as the default DVC remote and store a token in
49
59
  the local config.
50
60
  """
@@ -55,6 +65,13 @@ def setup_remote():
55
65
  raise_error("DVC remote config failed; have you run `dvc init`?")
56
66
  except InvalidGitRepositoryError:
57
67
  raise_error("Current directory is not a Git repository")
68
+ if not no_commit:
69
+ repo = git.Repo()
70
+ repo.git.reset()
71
+ repo.git.add(".dvc/config")
72
+ if calkit.git.get_staged_files():
73
+ typer.echo("Committing changes to DVC config")
74
+ repo.git.commit(["-m", "Set DVC remote"])
58
75
 
59
76
 
60
77
  @config_app.command(name="setup-remote-auth", help="Alias for 'remote-auth'.")
@@ -31,6 +31,8 @@ showcase:
31
31
  - text: Here is some text.
32
32
  - figure: figures/my-figure.png
33
33
  - text: There is a figure above.
34
+ - markdown: "### This is a Markdown heading"
35
+ - publication: paper/paper.pdf
34
36
  ```
35
37
 
36
38
  [This project](https://calkit.io/petebachant/strava-analysis)
File without changes
File without changes
File without changes