bsb-neuron 7.2.2__tar.gz → 7.2.3__tar.gz

{bsb_neuron-7.2.2 → bsb_neuron-7.2.3}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: bsb-neuron
-Version: 7.2.2
+Version: 7.2.3
 Summary: NEURON simulator adapter for the BSB framework.
 Author-email: Robin De Schepper <robin@alexandria.sc>, Dimitri Rodarie <dimitri.rodarie@unipv.it>
 Requires-Python: >=3.10,<4

bsb_neuron-7.2.3/bsb_neuron/_util.py

@@ -0,0 +1,17 @@
+import contextlib
+import warnings
+
+from arborize.exceptions import ProxyWarning
+
+
+@contextlib.contextmanager
+def ignore_arborize_proxy_warnings():
+    try:
+        catch = warnings.catch_warnings(category=ProxyWarning)
+    except TypeError:
+        # Python 3.10: This catches all warnings, sorry if this bites you.
+        # todo: remove when dropping support for Python 3.10 (EOL Oct 2026)
+        catch = warnings.catch_warnings()
+
+    with catch:
+        yield

{bsb_neuron-7.2.2 → bsb_neuron-7.2.3}/bsb_neuron/connection.py

@@ -1,6 +1,8 @@
 import numpy as np
 from bsb import AdapterError, ConnectionModel, Parameter, config, types
 
+from bsb_neuron._util import ignore_arborize_proxy_warnings
+
 
 @config.dynamic(
     attr_name="model_strategy",
@@ -71,6 +73,7 @@ class TransceiverModel(NeuronConnection, classmap_entry="transceiver"):
         self.create_transmitters(simdata, cs)
         self.create_receivers(simdata, cs)
 
+    @ignore_arborize_proxy_warnings()
     def create_transmitters(self, simdata, cs):
         """
         :type simdata: bsb_neuron.simulation.NeuronSimulationData
@@ -92,6 +95,7 @@ class TransceiverModel(NeuronConnection, classmap_entry="transceiver"):
             point = (loc[1], 0)
             cell.insert_transmitter(gid, point, source=self.source)
 
+    @ignore_arborize_proxy_warnings()
     def create_receivers(self, simdata, cs):
         """
         :type simdata: bsb_neuron.simulation.NeuronSimulationData

{bsb_neuron-7.2.2 → bsb_neuron-7.2.3}/bsb_neuron/devices/current_clamp.py

@@ -1,5 +1,6 @@
 from bsb import LocationTargetting, config, warn
 
+from .._util import ignore_arborize_proxy_warnings
 from ..device import NeuronDevice
 
 
@@ -32,6 +33,7 @@ class CurrentClamp(NeuronDevice, classmap_entry="current_clamp"):
                     )
                     clamped = True
 
+    @ignore_arborize_proxy_warnings()
     def _add_clamp(self, simdata, location, **annotations):
         sx = location.arc(0.5)
         clamp = location.section.iclamp(

{bsb_neuron-7.2.2 → bsb_neuron-7.2.3}/bsb_neuron/devices/spike_generator.py

@@ -1,5 +1,6 @@
 from bsb import LocationTargetting, config, types
 
+from .._util import ignore_arborize_proxy_warnings
 from ..device import NeuronDevice
 
 
@@ -9,6 +10,7 @@ class SpikeGenerator(NeuronDevice, classmap_entry="spike_generator"):
     synapses = config.list()
     parameters = config.catch_all(type=types.any_())
 
+    @ignore_arborize_proxy_warnings()
     def implement(self, adapter, simulation, simdata):
         for _model, pop in self.targetting.get_targets(
             adapter, simulation, simdata

{bsb_neuron-7.2.2 → bsb_neuron-7.2.3}/bsb_neuron/devices/synapse_recorder.py

@@ -1,5 +1,6 @@
 from bsb import LocationTargetting, config
 
+from .._util import ignore_arborize_proxy_warnings
 from ..device import NeuronDevice
 
 
@@ -10,6 +11,7 @@ class SynapseRecorder(NeuronDevice, classmap_entry="synapse_recorder"):
     synapse_types = config.list()
     """List of synaptic types"""
 
+    @ignore_arborize_proxy_warnings()
     def implement(self, adapter, simulation, simdata):
         for _model, pop in self.targetting.get_targets(
             adapter, simulation, simdata

{bsb_neuron-7.2.2 → bsb_neuron-7.2.3}/bsb_neuron/devices/voltage_clamp.py

@@ -2,6 +2,7 @@ import warnings
 
 from bsb import LocationTargetting, config, types
 
+from .._util import ignore_arborize_proxy_warnings
 from ..device import NeuronDevice
 
 
@@ -41,6 +42,7 @@ class VoltageClamp(NeuronDevice, classmap_entry="vclamp"):
                 )
                 clamped = True
 
+    @ignore_arborize_proxy_warnings()
     def _add_clamp(self, results, location, **annotations):
         sx = location.arc(0.5)
         clamp = location.section.vclamp(

{bsb_neuron-7.2.2 → bsb_neuron-7.2.3}/bsb_neuron/devices/voltage_recorder.py

@@ -1,5 +1,6 @@
 from bsb import LocationTargetting, config
 
+from .._util import ignore_arborize_proxy_warnings
 from ..device import NeuronDevice
 
 
@@ -24,6 +25,7 @@ class VoltageRecorder(NeuronDevice, classmap_entry="voltage_recorder"):
                         cell_id=target.id,
                     )
 
+    @ignore_arborize_proxy_warnings()
     def _add_voltage_recorder(self, results, location, **annotations):
         section = location.section
         x = location.arc(0)

{bsb_neuron-7.2.2 → bsb_neuron-7.2.3}/pyproject.toml

@@ -6,7 +6,7 @@ build-backend = "flit_core.buildapi"
 
 [project]
 name = "bsb-neuron"
-version = "7.2.2"
+version = "7.2.3"
 readme = "README.md"
 requires-python = ">=3.10,<4"
 dynamic = [ "description" ]