bsb-neuron 4.2.0__tar.gz → 4.2.2__tar.gz

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Files changed (17) hide show
  1. {bsb_neuron-4.2.0 → bsb_neuron-4.2.2}/PKG-INFO +4 -4
  2. {bsb_neuron-4.2.0 → bsb_neuron-4.2.2}/README.md +1 -1
  3. {bsb_neuron-4.2.0 → bsb_neuron-4.2.2}/bsb_neuron/__init__.py +1 -1
  4. {bsb_neuron-4.2.0 → bsb_neuron-4.2.2}/bsb_neuron/adapter.py +3 -3
  5. {bsb_neuron-4.2.0 → bsb_neuron-4.2.2}/bsb_neuron/devices/current_clamp.py +1 -1
  6. {bsb_neuron-4.2.0 → bsb_neuron-4.2.2}/bsb_neuron/devices/synapse_recorder.py +1 -1
  7. {bsb_neuron-4.2.0 → bsb_neuron-4.2.2}/pyproject.toml +3 -3
  8. {bsb_neuron-4.2.0 → bsb_neuron-4.2.2}/LICENSE +0 -0
  9. {bsb_neuron-4.2.0 → bsb_neuron-4.2.2}/bsb_neuron/cell.py +0 -0
  10. {bsb_neuron-4.2.0 → bsb_neuron-4.2.2}/bsb_neuron/connection.py +0 -0
  11. {bsb_neuron-4.2.0 → bsb_neuron-4.2.2}/bsb_neuron/device.py +0 -0
  12. {bsb_neuron-4.2.0 → bsb_neuron-4.2.2}/bsb_neuron/devices/__init__.py +0 -0
  13. {bsb_neuron-4.2.0 → bsb_neuron-4.2.2}/bsb_neuron/devices/ion_recorder.py +0 -0
  14. {bsb_neuron-4.2.0 → bsb_neuron-4.2.2}/bsb_neuron/devices/spike_generator.py +0 -0
  15. {bsb_neuron-4.2.0 → bsb_neuron-4.2.2}/bsb_neuron/devices/voltage_clamp.py +0 -0
  16. {bsb_neuron-4.2.0 → bsb_neuron-4.2.2}/bsb_neuron/devices/voltage_recorder.py +0 -0
  17. {bsb_neuron-4.2.0 → bsb_neuron-4.2.2}/bsb_neuron/simulation.py +0 -0
{bsb_neuron-4.2.0 → bsb_neuron-4.2.2}/PKG-INFO RENAMED
@@ -1,11 +1,11 @@
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  Metadata-Version: 2.3
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  Name: bsb-neuron
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- Version: 4.2.0
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+ Version: 4.2.2
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  Summary: NEURON simulator adapter for the BSB framework
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  Author-email: Robin De Schepper <robingilbert.deschepper@unipv.it>
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  Description-Content-Type: text/markdown
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  Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
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- Requires-Dist: bsb-core~=4.0
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+ Requires-Dist: bsb-core~=5.0
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  Requires-Dist: nrn-patch~=4.0
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  Requires-Dist: arborize[neuron]~=4.1
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  Requires-Dist: bsb-neuron[test] ; extra == "dev"
@@ -20,7 +20,7 @@ Requires-Dist: bsb-core[parallel] ; extra == "parallel"
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  Requires-Dist: bsb-core[parallel] ; extra == "test"
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  Requires-Dist: bsb-test~=4.0 ; extra == "test"
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  Requires-Dist: coverage~=7.0 ; extra == "test"
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- Requires-Dist: bsb-hdf5~=4.0 ; extra == "test"
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+ Requires-Dist: bsb-hdf5~=5.0 ; extra == "test"
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  Provides-Extra: dev
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  Provides-Extra: parallel
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  Provides-Extra: test
@@ -30,7 +30,7 @@ Provides-Extra: test
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  # bsb-neuron
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- bsb-neuron is a pluggin of [BSB](https://github.com/dbbs-lab/bsb) (see also
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+ bsb-neuron is a plugin of the [BSB](https://github.com/dbbs-lab/bsb) (see also
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  [bsb-core](https://github.com/dbbs-lab/bsb-core)).
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  It contains the interfaces and tools to simulate BSB circuit with the
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  [neuron simulator](https://www.neuron.yale.edu/neuron/).
{bsb_neuron-4.2.0 → bsb_neuron-4.2.2}/README.md RENAMED
@@ -3,7 +3,7 @@
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  # bsb-neuron
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- bsb-neuron is a pluggin of [BSB](https://github.com/dbbs-lab/bsb) (see also
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+ bsb-neuron is a plugin of the [BSB](https://github.com/dbbs-lab/bsb) (see also
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  [bsb-core](https://github.com/dbbs-lab/bsb-core)).
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  It contains the interfaces and tools to simulate BSB circuit with the
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  [neuron simulator](https://www.neuron.yale.edu/neuron/).
{bsb_neuron-4.2.0 → bsb_neuron-4.2.2}/bsb_neuron/__init__.py RENAMED
@@ -8,5 +8,5 @@ from . import devices
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  from .adapter import NeuronAdapter
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  from .simulation import NeuronSimulation
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- __version__ = "4.2.0"
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+ __version__ = "4.2.2"
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  __plugin__ = SimulationBackendPlugin(Simulation=NeuronSimulation, Adapter=NeuronAdapter)
{bsb_neuron-4.2.0 → bsb_neuron-4.2.2}/bsb_neuron/adapter.py RENAMED
@@ -38,10 +38,10 @@ class NeuronResult(SimulationResult):
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  v = p.record(obj)
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  def flush(segment):
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+ if "units" not in annotations.keys():
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+ annotations["units"] = "mV"
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  segment.analogsignals.append(
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- AnalogSignal(
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- list(v), units="mV", sampling_period=p.dt * ms, **annotations
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- )
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+ AnalogSignal(list(v), sampling_period=p.dt * ms, **annotations)
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  )
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  self.create_recorder(flush)
{bsb_neuron-4.2.0 → bsb_neuron-4.2.2}/bsb_neuron/devices/current_clamp.py RENAMED
@@ -33,4 +33,4 @@ class CurrentClamp(NeuronDevice, classmap_entry="current_clamp"):
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  clamp = location.section.iclamp(
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  x=sx, delay=self.before, duration=self.duration, amplitude=self.amplitude
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  )
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- simdata.result.record(clamp._ref_i, **annotations)
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+ simdata.result.record(clamp._ref_i, **annotations, units="nA")
{bsb_neuron-4.2.0 → bsb_neuron-4.2.2}/bsb_neuron/devices/synapse_recorder.py RENAMED
@@ -30,4 +30,4 @@ class SynapseRecorder(NeuronDevice, classmap_entry="synapse_recorder"):
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  def _record_synaptic_current(result, synapse, **annotations):
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- result.record(synapse._pp._ref_i, **annotations)
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+ result.record(synapse._pp._ref_i, **annotations, units="nA")
{bsb_neuron-4.2.0 → bsb_neuron-4.2.2}/pyproject.toml RENAMED
@@ -10,7 +10,7 @@ license = { file = "LICENSE" }
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  classifiers = ["License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)"]
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  dynamic = ["version", "description"]
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  dependencies = [
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- "bsb-core~=4.0",
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+ "bsb-core~=5.0",
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  "nrn-patch~=4.0",
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  "arborize[neuron]~=4.1"
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  ]
@@ -27,7 +27,7 @@ test = [
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  "bsb-core[parallel]",
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  "bsb-test~=4.0",
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  "coverage~=7.0",
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- "bsb-hdf5~=4.0"
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+ "bsb-hdf5~=5.0"
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  ]
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  dev = [
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  "bsb-neuron[test]",
@@ -47,7 +47,7 @@ line-length = 90
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  profile = "black"
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  [tool.bumpversion]
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- current_version = "4.2.0"
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+ current_version = "4.2.2"
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  parse = "(?P<major>\\d+)\\.(?P<minor>\\d+)\\.(?P<patch>\\d+)"
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  serialize = ["{major}.{minor}.{patch}"]
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  search = "{current_version}"
{bsb_neuron-4.2.0 → bsb_neuron-4.2.2}/LICENSE RENAMED
File without changes