bsb-nest 4.1.0__tar.gz → 4.2.1__tar.gz

bsb_nest-4.2.1/PKG-INFO

@@ -0,0 +1,36 @@
+Metadata-Version: 2.1
+Name: bsb-nest
+Version: 4.2.1
+Summary: NEST simulation adapter for the BSB framework.
+Author-email: Robin De Schepper <robingilbert.deschepper@unipv.it>
+Description-Content-Type: text/markdown
+Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
+Requires-Dist: bsb-core~=4.1
+Requires-Dist: bsb-nest[test] ; extra == "dev"
+Requires-Dist: build~=1.0 ; extra == "dev"
+Requires-Dist: twine~=4.0 ; extra == "dev"
+Requires-Dist: pre-commit~=3.5 ; extra == "dev"
+Requires-Dist: black~=24.1.1 ; extra == "dev"
+Requires-Dist: isort~=5.12 ; extra == "dev"
+Requires-Dist: snakeviz~=2.1 ; extra == "dev"
+Requires-Dist: bump-my-version~=0.24 ; extra == "dev"
+Requires-Dist: bsb-core[parallel] ; extra == "parallel"
+Requires-Dist: bsb-core[parallel] ; extra == "test"
+Requires-Dist: bsb-test~=4.0 ; extra == "test"
+Requires-Dist: bsb-hdf5~=4.0 ; extra == "test"
+Requires-Dist: bsb-arbor~=4.0 ; extra == "test"
+Requires-Dist: coverage~=7.0 ; extra == "test"
+Provides-Extra: dev
+Provides-Extra: parallel
+Provides-Extra: test
+
+[![Build Status](https://github.com/dbbs-lab/bsb-nest/actions/workflows/build.yml/badge.svg)](https://github.com/dbbs-lab/bsb-nest/actions/workflows/build.yml)
+[![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
+
+# bsb-nest
+
+bsb-nest is a pluggin of [BSB](https://github.com/dbbs-lab/bsb) (see also 
+[bsb-core](https://github.com/dbbs-lab/bsb-core)). 
+It contains the interfaces and tools to simulate BSB circuit with the 
+[NEST simulator](https://www.nest-simulator.org/).
+

bsb_nest-4.2.1/README.md

@@ -0,0 +1,9 @@
+[![Build Status](https://github.com/dbbs-lab/bsb-nest/actions/workflows/build.yml/badge.svg)](https://github.com/dbbs-lab/bsb-nest/actions/workflows/build.yml)
+[![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black)
+
+# bsb-nest
+
+bsb-nest is a pluggin of [BSB](https://github.com/dbbs-lab/bsb) (see also 
+[bsb-core](https://github.com/dbbs-lab/bsb-core)). 
+It contains the interfaces and tools to simulate BSB circuit with the 
+[NEST simulator](https://www.nest-simulator.org/).

{bsb_nest-4.1.0 → bsb_nest-4.2.1}/bsb_nest/__init__.py

@@ -9,4 +9,4 @@ from .adapter import NestAdapter
 from .simulation import NestSimulation
 
 __plugin__ = SimulationBackendPlugin(Simulation=NestSimulation, Adapter=NestAdapter)
-__version__ = "4.1.0"
+__version__ = "4.2.1"

{bsb_nest-4.1.0 → bsb_nest-4.2.1}/bsb_nest/connection.py

@@ -69,6 +69,8 @@ class NestConnection(compose_nodes(NestConnectionSettings, ConnectionModel)):
                 pre_nodes, post_nodes, cs
             ):
                 MPI.barrier()
+                if len(pre_locs) == 0 or len(post_locs) == 0:
+                    continue
                 cell_pairs, multiplicity = np.unique(
                     np.column_stack((pre_locs[:, 0], post_locs[:, 0])),
                     return_counts=True,
@@ -95,7 +97,8 @@ class NestConnection(compose_nodes(NestConnectionSettings, ConnectionModel)):
         predicted_all_mem = (
             len(pre_nodes) * 8 * 2 + len(post_nodes) * 8 * 2 + len(cs) * 6 * 8 * (16 + 2)
         ) * MPI.get_size()
-        predicted_local_mem = predicted_all_mem / len(cs.get_local_chunks("out"))
+        n_chunks = len(cs.get_local_chunks("out"))
+        predicted_local_mem = (predicted_all_mem / n_chunks) if n_chunks > 0 else 0.0
         if predicted_local_mem > avmem / 2:
             # Iterate block-by-block
             return self.block_iterator(cs)

{bsb_nest-4.1.0 → bsb_nest-4.2.1}/pyproject.toml

@@ -20,6 +20,7 @@ nest = "bsb_nest"
 [project.optional-dependencies]
 parallel = ["bsb-core[parallel]"]
 test = [
+    "bsb-core[parallel]",
     "bsb-test~=4.0",
     "bsb-hdf5~=4.0",
     # Required to load the Brunel config file
@@ -27,10 +28,14 @@ test = [
     "coverage~=7.0"
 ]
 dev = [
+    "bsb-nest[test]",
+    "build~=1.0",
+    "twine~=4.0",
     "pre-commit~=3.5",
-    "black~=24.0",
+    "black~=24.1.1",
     "isort~=5.12",
-    "bump-my-version~=0.18"
+    "snakeviz~=2.1",
+    "bump-my-version~=0.24"
 ]
 
 [tool.black]
@@ -41,7 +46,7 @@ profile = "black"
 known_third_party = ["nest"]
 
 [tool.bumpversion]
-current_version = "4.1.0"
+current_version = "4.2.1"
 parse = "(?P<major>\\d+)\\.(?P<minor>\\d+)\\.(?P<patch>\\d+)"
 serialize = ["{major}.{minor}.{patch}"]
 search = "{current_version}"

bsb_nest-4.1.0/PKG-INFO

@@ -1,23 +0,0 @@
-Metadata-Version: 2.1
-Name: bsb-nest
-Version: 4.1.0
-Summary: NEST simulation adapter for the BSB framework.
-Author-email: Robin De Schepper <robingilbert.deschepper@unipv.it>
-Description-Content-Type: text/markdown
-Classifier: License :: OSI Approved :: GNU General Public License v3 or later (GPLv3+)
-Requires-Dist: bsb-core~=4.1
-Requires-Dist: pre-commit~=3.5 ; extra == "dev"
-Requires-Dist: black~=24.0 ; extra == "dev"
-Requires-Dist: isort~=5.12 ; extra == "dev"
-Requires-Dist: bump-my-version~=0.18 ; extra == "dev"
-Requires-Dist: bsb-core[parallel] ; extra == "parallel"
-Requires-Dist: bsb-test~=4.0 ; extra == "test"
-Requires-Dist: bsb-hdf5~=4.0 ; extra == "test"
-Requires-Dist: bsb-arbor~=4.0 ; extra == "test"
-Requires-Dist: coverage~=7.0 ; extra == "test"
-Provides-Extra: dev
-Provides-Extra: parallel
-Provides-Extra: test
-
-# bsb-nest
-

bsb_nest-4.1.0/README.md

@@ -1 +0,0 @@
-# bsb-nest