bs-python-utils 0.9.3__tar.gz → 1.0.1__tar.gz

{bs_python_utils-0.9.3 → bs_python_utils-1.0.1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: bs-python-utils
-Version: 0.9.3
+Version: 1.0.1
 Summary: Utilities programs for my Python code
 Requires-Python: >=3.12
 Description-Content-Type: text/markdown
@@ -16,7 +16,7 @@ Requires-Dist: numpy>=2.3.3
 Requires-Dist: pandas>=2.3.2
 Requires-Dist: pre-commit>=4.3.0
 Requires-Dist: pytest>=8.4.2
-Requires-Dist: mypy
+Requires-Dist: mypy>=1.18
 Requires-Dist: ruff>=0.14.0
 Requires-Dist: scikit-learn>=1.7.2
 Requires-Dist: scipy>=1.16.2
@@ -25,16 +25,22 @@ Requires-Dist: statsmodels>=0.14.5
 Requires-Dist: streamlit>=1.49.1
 Requires-Dist: vega-datasets>=0.9.0
 Requires-Dist: colorama>=0.4.6
-Requires-Dist: pyarrow>=21.0.0
+Requires-Dist: pyarrow>=23.0.0
 Dynamic: license-file
 
 ## bs-python-utils
 
+[![PyPI version](https://img.shields.io/pypi/v/bs-python-utils)](https://pypi.org/project/bs-python-utils/)
+<!--
+[![Release](https://img.shields.io/github/v/release/bsalanie/bs-python-utils)](https://github.com/bsalanie/bs-python-utils/releases)
+-->
+[![Build status](https://img.shields.io/github/actions/workflow/status/bsalanie/bs-python-utils/main.yml?branch=main)](https://github.com/bsalanie/bs-python-utils/actions/workflows/main.yml?query=branch%3Amain)
+<!--
+[![Tests](https://img.shields.io/github/actions/workflow/status/bsalanie/bs-python-utils/tests.yml?branch=main&label=tests)](https://github.com/bsalanie/bs-python-utils/actions/workflows/tests.yml?query=branch%3Amain)
+-->
+[![Commit activity](https://img.shields.io/github/commit-activity/m/bsalanie/bs-python-utils)](https://github.com/bsalanie/bs-python-utils/commits/main)
 ![GitHub last commit](https://img.shields.io/github/last-commit/bsalanie/bs-python-utils)
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-<!-- [![Release](https://img.shields.io/github/v/release/bsalanie/bs-python-utils)](https://img.shields.io/github/v/release/bsalanie/bs-python-utils) -->
-
-[![Build status](https://img.shields.io/github/actions/workflow/status/bsalanie/bs-python-utils/main.yml?branch=main)](https://github.com/bsalanie/bs-python-utils/actions/workflows/main.yml?query=branch%3Amain) <!-- [![codecov](https://codecov.io/gh/bsalanie/bs-python-utils/branch/main/graph/badge.svg)](https://codecov.io/gh/bsalanie/bs-python-utils) --> <!-- [![Commit activity](https://img.shields.io/github/commit-activity/m/bsalanie/bs-python-utils)](https://img.shields.io/github/commit-activity/m/bsalanie/bs-python-utils) --> [![License](https://img.shields.io/github/license/bsalanie/bs-python-utils)](https://img.shields.io/github/license/bsalanie/bs-python-utils)
+[![License](https://img.shields.io/github/license/bsalanie/bs-python-utils)](https://img.shields.io/github/license/bsalanie/bs-python-utils)
 
 **My Python utilities**.
 
@@ -43,6 +49,12 @@ Dynamic: license-file
 
 ### Release notes
 
+#### 1.0.1 (May 9, 2026)
+Fixed badges.
+
+#### 1.0 (May 9, 2026)
+Created subpackages (no change in the API).
+
 #### 0.9 (March 18, 2026)
 Improved bivariate quantiles.
 

{bs_python_utils-0.9.3 → bs_python_utils-1.0.1}/README.md

@@ -1,10 +1,16 @@
 ## bs-python-utils
 
+[![PyPI version](https://img.shields.io/pypi/v/bs-python-utils)](https://pypi.org/project/bs-python-utils/)
+<!--
+[![Release](https://img.shields.io/github/v/release/bsalanie/bs-python-utils)](https://github.com/bsalanie/bs-python-utils/releases)
+-->
+[![Build status](https://img.shields.io/github/actions/workflow/status/bsalanie/bs-python-utils/main.yml?branch=main)](https://github.com/bsalanie/bs-python-utils/actions/workflows/main.yml?query=branch%3Amain)
+<!--
+[![Tests](https://img.shields.io/github/actions/workflow/status/bsalanie/bs-python-utils/tests.yml?branch=main&label=tests)](https://github.com/bsalanie/bs-python-utils/actions/workflows/tests.yml?query=branch%3Amain)
+-->
+[![Commit activity](https://img.shields.io/github/commit-activity/m/bsalanie/bs-python-utils)](https://github.com/bsalanie/bs-python-utils/commits/main)
 ![GitHub last commit](https://img.shields.io/github/last-commit/bsalanie/bs-python-utils)
-
-<!-- [![Release](https://img.shields.io/github/v/release/bsalanie/bs-python-utils)](https://img.shields.io/github/v/release/bsalanie/bs-python-utils) -->
-
-[![Build status](https://img.shields.io/github/actions/workflow/status/bsalanie/bs-python-utils/main.yml?branch=main)](https://github.com/bsalanie/bs-python-utils/actions/workflows/main.yml?query=branch%3Amain) <!-- [![codecov](https://codecov.io/gh/bsalanie/bs-python-utils/branch/main/graph/badge.svg)](https://codecov.io/gh/bsalanie/bs-python-utils) --> <!-- [![Commit activity](https://img.shields.io/github/commit-activity/m/bsalanie/bs-python-utils)](https://img.shields.io/github/commit-activity/m/bsalanie/bs-python-utils) --> [![License](https://img.shields.io/github/license/bsalanie/bs-python-utils)](https://img.shields.io/github/license/bsalanie/bs-python-utils)
+[![License](https://img.shields.io/github/license/bsalanie/bs-python-utils)](https://img.shields.io/github/license/bsalanie/bs-python-utils)
 
 **My Python utilities**.
 
@@ -13,6 +19,12 @@
 
 ### Release notes
 
+#### 1.0.1 (May 9, 2026)
+Fixed badges.
+
+#### 1.0 (May 9, 2026)
+Created subpackages (no change in the API).
+
 #### 0.9 (March 18, 2026)
 Improved bivariate quantiles.
 

bs_python_utils-1.0.1/bs_python_utils/Timer.py

@@ -0,0 +1 @@
+from bs_python_utils.core.Timer import *  # noqa: F401, F403

bs_python_utils-1.0.1/bs_python_utils/bivariate_quantiles.py

@@ -0,0 +1 @@
+from bs_python_utils.stats.bivariate_quantiles import *  # noqa: F401, F403

bs_python_utils-1.0.1/bs_python_utils/bs_altair.py

@@ -0,0 +1 @@
+from bs_python_utils.viz.bs_altair import *  # noqa: F401, F403

bs_python_utils-1.0.1/bs_python_utils/bs_logging.py

@@ -0,0 +1 @@
+from bs_python_utils.core.bs_logging import *  # noqa: F401, F403

bs_python_utils-1.0.1/bs_python_utils/bs_mathstr.py

@@ -0,0 +1 @@
+from bs_python_utils.core.bs_mathstr import *  # noqa: F401, F403

bs_python_utils-1.0.1/bs_python_utils/bs_mem.py

@@ -0,0 +1 @@
+from bs_python_utils.core.bs_mem import *  # noqa: F401, F403

bs_python_utils-1.0.1/bs_python_utils/bs_opt.py

@@ -0,0 +1 @@
+from bs_python_utils.opt.bs_opt import *  # noqa: F401, F403

bs_python_utils-1.0.1/bs_python_utils/bs_plots.py

@@ -0,0 +1 @@
+from bs_python_utils.viz.bs_plots import *  # noqa: F401, F403

bs_python_utils-1.0.1/bs_python_utils/bs_seaborn.py

@@ -0,0 +1 @@
+from bs_python_utils.viz.bs_seaborn import *  # noqa: F401, F403

bs_python_utils-1.0.1/bs_python_utils/bs_sparse_gaussian.py

@@ -0,0 +1 @@
+from bs_python_utils.numerical.bs_sparse_gaussian import *  # noqa: F401, F403

bs_python_utils-1.0.1/bs_python_utils/bsmplutils.py

@@ -0,0 +1 @@
+from bs_python_utils.viz.bsmplutils import *  # noqa: F401, F403

bs_python_utils-1.0.1/bs_python_utils/bsnputils.py

@@ -0,0 +1 @@
+from bs_python_utils.numerical.bsnputils import *  # noqa: F401, F403

bs_python_utils-1.0.1/bs_python_utils/bssputils.py

@@ -0,0 +1 @@
+from bs_python_utils.numerical.bssputils import *  # noqa: F401, F403

bs_python_utils-1.0.1/bs_python_utils/bsstats.py

@@ -0,0 +1 @@
+from bs_python_utils.stats.bsstats import *  # noqa: F401, F403

bs_python_utils-1.0.1/bs_python_utils/bsutils.py

@@ -0,0 +1 @@
+from bs_python_utils.core.bsutils import *  # noqa: F401, F403

bs_python_utils-1.0.1/bs_python_utils/chebyshev.py

@@ -0,0 +1 @@
+from bs_python_utils.numerical.chebyshev import *  # noqa: F401, F403

bs_python_utils-1.0.1/bs_python_utils/core/__init__.py

@@ -0,0 +1 @@
+# core: general utilities — bsutils, Timer, bs_logging, bs_mathstr, bs_mem

{bs_python_utils-0.9.3/bs_python_utils → bs_python_utils-1.0.1/bs_python_utils/core}/bs_mem.py

@@ -13,7 +13,7 @@ import tracemalloc
 
 import pandas as pd
 
-from bs_python_utils.bsutils import print_stars
+from bs_python_utils.core.bsutils import print_stars
 
 
 def _obj_size_fmt(num: int) -> str:

bs_python_utils-1.0.1/bs_python_utils/data_anal/__init__.py

@@ -0,0 +1 @@
+# data: Pandas and scikit-learn utilities

{bs_python_utils-0.9.3/bs_python_utils → bs_python_utils-1.0.1/bs_python_utils/data_anal}/pandas_utils.py

@@ -11,8 +11,8 @@ from itertools import product
 import numpy as np
 import pandas as pd
 
-from bs_python_utils.bsnputils import bs_error_abort, check_vector_or_matrix
-from bs_python_utils.bsutils import print_stars
+from bs_python_utils.core.bsutils import bs_error_abort, print_stars
+from bs_python_utils.numerical.bsnputils import check_vector_or_matrix
 
 
 def bspd_print(

bs_python_utils-1.0.1/bs_python_utils/distance_covariances.py

@@ -0,0 +1 @@
+from bs_python_utils.stats.distance_covariances import *  # noqa: F401, F403

{bs_python_utils-0.9.3 → bs_python_utils-1.0.1}/bs_python_utils/examples/examples_altair.py

@@ -5,7 +5,7 @@ import numpy as np
 from vega_datasets import data
 
 
-from bs_python_utils.bs_altair import (
+from bs_python_utils.viz.bs_altair import (
     alt_boxes,
     alt_density,
     alt_faceted_densities,

{bs_python_utils-0.9.3 → bs_python_utils-1.0.1}/bs_python_utils/examples/examples_distance_covariances.py

@@ -2,7 +2,11 @@
 
 import numpy as np
 
-from bs_python_utils.distance_covariances import dcov_dcor, pdcov_pdcor, pvalue_pdcov
+from bs_python_utils.stats.distance_covariances import (
+    dcov_dcor,
+    pdcov_pdcor,
+    pvalue_pdcov,
+)
 
 # example page 2396 of Szekely and Rizzo 2014
 n = 2000

{bs_python_utils-0.9.3 → bs_python_utils-1.0.1}/bs_python_utils/examples/examples_mem.py

@@ -4,7 +4,7 @@ import tracemalloc
 
 import numpy as np
 
-from bs_python_utils.bs_mem import (
+from bs_python_utils.core.bs_mem import (
     memory_display_top,
     memory_display_top_diffs,
     memory_usage,

{bs_python_utils-0.9.3 → bs_python_utils-1.0.1}/bs_python_utils/examples/examples_mpl.py

@@ -2,7 +2,7 @@
 
 import numpy as np
 
-from bs_python_utils.bsmplutils import bs_mpl_plot_dcm_fit
+from bs_python_utils.viz.bsmplutils import bs_mpl_plot_dcm_fit
 
 n_obs = 100
 n_y = 4

{bs_python_utils-0.9.3 → bs_python_utils-1.0.1}/bs_python_utils/examples/examples_opt.py

@@ -2,14 +2,14 @@
 
 import numpy as np
 
-from bs_python_utils.bs_opt import (
+from bs_python_utils.core.bsutils import print_stars
+from bs_python_utils.numerical.bssputils import describe_array
+from bs_python_utils.opt.bs_opt import (
     acc_grad_descent,
     armijo_alpha,
     barzilai_borwein_alpha,
     minimize_some_fixed,
 )
-from bs_python_utils.bssputils import describe_array
-from bs_python_utils.bsutils import print_stars
 
 print_stars("Testing acc_grad_descent")
 

{bs_python_utils-0.9.3 → bs_python_utils-1.0.1}/bs_python_utils/examples/examples_seaborn.py

@@ -3,7 +3,11 @@
 import matplotlib.pyplot as plt
 import seaborn as sns
 
-from bs_python_utils.bs_seaborn import bs_regplot, bs_sns_bar_x_byf, bs_sns_bar_x_byfg
+from bs_python_utils.viz.bs_seaborn import (
+    bs_regplot,
+    bs_sns_bar_x_byf,
+    bs_sns_bar_x_byfg,
+)
 
 cars = sns.load_dataset("mpg")
 

{bs_python_utils-0.9.3 → bs_python_utils-1.0.1}/bs_python_utils/examples/examples_sklearn.py

@@ -4,7 +4,7 @@ import matplotlib.pyplot as plt
 import numpy as np
 from sklearn.preprocessing import PolynomialFeatures, StandardScaler
 
-from bs_python_utils.sklearn_utils import skl_npreg_lasso
+from bs_python_utils.data_anal.sklearn_utils import skl_npreg_lasso
 
 n_obs = 10000
 X1 = -2.0 + 3.0 * np.random.uniform(size=n_obs)

{bs_python_utils-0.9.3 → bs_python_utils-1.0.1}/bs_python_utils/examples/examples_sparse_gaussian.py

@@ -1,9 +1,10 @@
 """Integrate x -> x**4 over N(0, 1) using the sparse Gaussian grids."""
 
 from typing import cast
+
 import numpy as np
 
-from bs_python_utils.bs_sparse_gaussian import setup_sparse_gaussian
+from bs_python_utils.numerical.bs_sparse_gaussian import setup_sparse_gaussian
 
 
 def sum_x_to_the_fourth(x: np.ndarray) -> np.ndarray:

bs_python_utils-1.0.1/bs_python_utils/numerical/__init__.py

@@ -0,0 +1 @@
+# numerical: NumPy/SciPy utilities, Chebyshev, sparse Gaussian integration

{bs_python_utils-0.9.3/bs_python_utils → bs_python_utils-1.0.1/bs_python_utils/numerical}/bs_sparse_gaussian.py

@@ -16,8 +16,8 @@ from importlib import resources
 
 import numpy as np
 
-from bs_python_utils.bsnputils import TwoArrays
-from bs_python_utils.bsutils import bs_error_abort
+from bs_python_utils.numerical.bsnputils import TwoArrays
+from bs_python_utils.core.bsutils import bs_error_abort
 
 
 def read_grid_file(grid_name: str) -> np.ndarray:

{bs_python_utils-0.9.3/bs_python_utils → bs_python_utils-1.0.1/bs_python_utils/numerical}/bsnputils.py

@@ -35,7 +35,7 @@ from typing import Any, Callable, Iterable, Union, cast
 import numpy as np
 from numpy.polynomial import Polynomial
 
-from bs_python_utils.bsutils import bs_error_abort
+from bs_python_utils.core.bsutils import bs_error_abort
 
 # some useful types
 TwoArrays = tuple[np.ndarray, np.ndarray]

{bs_python_utils-0.9.3/bs_python_utils → bs_python_utils-1.0.1/bs_python_utils/numerical}/bssputils.py

@@ -12,8 +12,8 @@ import numpy as np
 import scipy.stats as sts
 from scipy.interpolate import UnivariateSpline
 
-from bs_python_utils.bsnputils import check_vector, rice_stderr
-from bs_python_utils.bsutils import bs_error_abort, print_stars
+from bs_python_utils.numerical.bsnputils import check_vector, rice_stderr
+from bs_python_utils.core.bsutils import bs_error_abort, print_stars
 
 
 def describe_array(v: np.ndarray, name: str | None = "v") -> Any:

{bs_python_utils-0.9.3/bs_python_utils → bs_python_utils-1.0.1/bs_python_utils/numerical}/chebyshev.py

@@ -28,7 +28,7 @@ from typing import cast
 import numpy as np
 import numpy.polynomial.chebyshev as ncheb
 
-from bs_python_utils.bsnputils import (
+from bs_python_utils.numerical.bsnputils import (
     ArrayFunctionOfArray,
     FloatOrArray,
     TwoArrays,
@@ -36,7 +36,7 @@ from bs_python_utils.bsnputils import (
     check_square,
     check_vector,
 )
-from bs_python_utils.bsutils import bs_error_abort
+from bs_python_utils.core.bsutils import bs_error_abort
 
 
 @dataclass

bs_python_utils-1.0.1/bs_python_utils/opt/__init__.py

@@ -0,0 +1 @@
+# opt: optimization algorithms and wrappers

{bs_python_utils-0.9.3/bs_python_utils → bs_python_utils-1.0.1/bs_python_utils/opt}/bs_opt.py

@@ -25,9 +25,9 @@ import numpy as np
 import scipy.linalg as spla
 import scipy.optimize as spopt
 
-from bs_python_utils.bsnputils import TwoArrays, check_vector, npmaxabs
-from bs_python_utils.bsutils import bs_error_abort, print_stars
-from bs_python_utils.Timer import timeit
+from bs_python_utils.numerical.bsnputils import TwoArrays, check_vector, npmaxabs
+from bs_python_utils.core.bsutils import bs_error_abort, print_stars
+from bs_python_utils.core.Timer import timeit
 
 ScalarFunctionAndGradient = Callable[
     [np.ndarray, Iterable, Optional[bool]], Union[float, tuple[float, np.ndarray]]

bs_python_utils-1.0.1/bs_python_utils/pandas_utils.py

@@ -0,0 +1 @@
+from bs_python_utils.data_anal.pandas_utils import *  # noqa: F401, F403

bs_python_utils-1.0.1/bs_python_utils/sklearn_utils.py

@@ -0,0 +1 @@
+from bs_python_utils.data_anal.sklearn_utils import *  # noqa: F401, F403

bs_python_utils-1.0.1/bs_python_utils/stats/__init__.py

@@ -0,0 +1 @@
+# stats: statistics — TSLS, nonparametric estimation, bivariate quantiles, distance covariances

{bs_python_utils-0.9.3/bs_python_utils → bs_python_utils-1.0.1/bs_python_utils/stats}/bivariate_quantiles.py

@@ -1,39 +1,41 @@
-"""This takes in observations of a bivariate random variable `y`
-and computes vector quantiles and vector ranks à la
-[Chernozhukov-Galichon-Hallin-Henry (*Ann. Stats.* 2017)](
-https://projecteuclid.org/journals/annals-of-statistics/volume-45/
-issue-1/MongeKantorovich-depth-quantiles-ranks-and-signs/10.1214/16-AOS1450.full).
+"""Bivariate vector quantiles and ranks.
 
+This module implements the bivariate case of the vector quantiles and vector
+ranks construction of Chernozhukov, Galichon, Hallin, and Henry (2017).
 
-Note:
-    if the math looks strange in the documentation, just reload the page.
+The main workflow is:
 
-The sequence of steps is as follows:
+1. Solve for the dual weights ``v`` with :func:`_solve_for_v`.
+2. Evaluate quantiles with :func:`bivariate_quantiles_v` or
+   :func:`bivariate_quantiles`.
+3. Read off barycentric ranks with :func:`bivariate_ranks`.
 
-1.  optimize the weights: `v = solve_for_v(y, n_nodes)` given  `n_nodes` Chebyshev nodes for numerical integration
-2. to obtain the $(u_1,u_2)$ quantiles for $(u_1, u_2)\\in [0,1]$, run
-`qtiles_y = bivariate_quantiles_v(y, v, u1, u2)`
-3. to compute the vector ranks for all points in the sample (the barycenters
-  of the cells in the power diagram):
-`ranks_y = bivariate_ranks_v(y, v, n_nodes)`
-
-Steps 1 and 2 can be combined: `qtiles_y = bivariate_quantiles(y, v, u1, u2, n_nodes)`
-
-Steps 1 and 3 can be combined: `ranks_y = bivariate_ranks(y, n_nodes)`
+References:
+    Chernozhukov, Galichon, Hallin, and Henry. "Monge-Kantorovich Depth,
+    Quantiles, Ranks and Signs." *Annals of Statistics* 45(1), 2017.
 """
 
 from typing import cast
 
 import numpy as np
 
-from bs_python_utils.bs_opt import minimize_free, print_optimization_results
-from bs_python_utils.bsnputils import TwoArrays, npmaxabs
-from bs_python_utils.bsutils import bs_error_abort
-from bs_python_utils.chebyshev import Interval, cheb_get_nodes_1d
+from bs_python_utils.core.bsutils import bs_error_abort
+from bs_python_utils.numerical.bsnputils import TwoArrays, npmaxabs
+from bs_python_utils.numerical.chebyshev import Interval, cheb_get_nodes_1d
+from bs_python_utils.opt.bs_opt import minimize_free, print_optimization_results
 
 
 def _compute_ad(y: np.ndarray) -> TwoArrays:
-    """Build the `A` and `dy2` matrices used in the dual optimisation."""
+    """Compute matrices used in the dual optimization.
+
+    Args:
+        y: Observations with shape ``(n, 2)``.
+
+    Returns:
+        A tuple ``(a_mat, dy2)`` where ``a_mat`` contains the pairwise slope
+        ratios and ``dy2`` contains pairwise differences in the second
+        coordinate.
+    """
     y1 = y[:, 0]
     dy1 = np.subtract.outer(y1, y1)
     y2 = y[:, 1]
@@ -47,7 +49,22 @@ def _compute_ad(y: np.ndarray) -> TwoArrays:
 def _compute_m_M(
     v: np.ndarray, a_mat: np.ndarray, dy2: np.ndarray, tau1_nodes: np.ndarray
 ) -> TwoArrays:
-    """Build the `m` and `M` matrices used in the dual optimisation."""
+    """Compute the lower and upper bounds used in the dual optimization.
+
+    Args:
+        v: Dual weights of length ``n``.
+        a_mat: Pairwise slope matrix returned by :func:`_compute_ad`.
+        dy2: Pairwise differences in the second coordinate.
+        tau1_nodes: Quadrature nodes for the first coordinate.
+
+    Returns:
+        A tuple ``(m, M)`` with arrays of shape ``(n, len(tau1_nodes))``.
+
+    Warning:
+        The (rare) ``dy2 == 0`` case currently raises warnings in computing ``b_mat``.
+        That logic works for the present implementation but should be refactored into a cleaner, more explicit
+        branch.
+    """
     dv = np.subtract.outer(v, v)
     b_mat = dv / dy2
     np.fill_diagonal(dy2, 0.0)
@@ -69,15 +86,19 @@ def _compute_m_M(
 
 
 def bivariate_quantiles_v(y: np.ndarray, tau: np.ndarray, v: np.ndarray) -> np.ndarray:
-    """Evaluate vector quantiles for a given set of dual weights.
+    """Evaluate vector quantiles for fixed dual weights.
 
     Args:
         y: Observations with shape ``(n, 2)``.
-        tau: Evaluation points in ``[0, 1]^2`` (shape ``(m, 2)``).
-        v: Dual weights solving the optimal transport problem (length ``n``).
+        tau: Evaluation points in ``[0, 1]^2`` with shape ``(m, 2)``.
+        v: Dual weights solving the optimal transport problem, with length
+            ``n``.
 
     Returns:
         Array of quantile locations with shape ``(m, 2)``.
+
+    Raises:
+        SystemExit: If ``tau`` does not have exactly two columns.
     """
     if tau.shape[1] != 2:
         bs_error_abort("tau must have two columns")
@@ -88,16 +109,19 @@ def bivariate_quantiles_v(y: np.ndarray, tau: np.ndarray, v: np.ndarray) -> np.n
 def _objgrad(
     v: np.ndarray, args: list, gr: bool = False
 ) -> float | tuple[float, np.ndarray, np.ndarray]:
-    """computes the expectation of $\\psi(U, v)$ and perhaps its gradient wrt `v` or the bivariate ranks
+    """Evaluate the objective and optionally its gradient.
 
     Args:
-        v: an `(n-1)`-vector
-        args: a list of other arguments `[y, a_mat, dy2, tau1_nodes, tau1_weights, verbose]`
-        gr: if `False`, we only return the value of the objective function
-            if `True`, we also return the gradient and the bivariate ranks
+        v: Free dual variables of length ``n - 1``.
+        args: Positional arguments ``[y, a_mat, dy2, tau1_nodes, tau1_weights,
+            verbose]``.
+        gr: Whether to also return the gradient and the barycentric ranks.
 
     Returns:
-        the value of the expectation and perhaps its gradient and the bivariate ranks
+        If ``gr`` is ``False``, returns the scalar objective value.
+
+        If ``gr`` is ``True``, returns a tuple ``(obj_val, grad_val,
+        bivrank)``.
     """
     y = args[0]
     y1 = y[:, 0]
@@ -136,10 +160,28 @@ def _objgrad(
 
 
 def _obj(v: np.ndarray, args: list):
+    """Return only the objective value.
+
+    Args:
+        v: Free dual variables.
+        args: Positional arguments passed to :func:`_objgrad`.
+
+    Returns:
+        Scalar objective value.
+    """
     return _objgrad(v, args)
 
 
 def _grad(v: np.ndarray, args: list):
+    """Return only the objective gradient.
+
+    Args:
+        v: Free dual variables.
+        args: Positional arguments passed to :func:`_objgrad`.
+
+    Returns:
+        Objective gradient.
+    """
     res_objg = cast(tuple[float, np.ndarray], _objgrad(v, args, gr=True))
     grad_val = res_objg[1]
     verbose = args[-1]
@@ -149,17 +191,20 @@ def _grad(v: np.ndarray, args: list):
 
 
 def _solve_for_v(y: np.ndarray, n_nodes: int = 32, verbose: bool = False) -> TwoArrays:
-    """Solve the dual optimisation to obtain the optimal weights ``v`` and the bivariate ranks
+    """Solve the dual optimization problem for the sample.
 
     Args:
         y: Observations with shape ``(n, 2)``.
-        n_nodes: Number of Chebyshev nodes for the quadrature.
+        n_nodes: Number of Chebyshev nodes used for quadrature.
         verbose: Print optimisation diagnostics when ``True``.
 
     Returns:
-        Array of length ``n`` containing the optimal weights (including the
-            residual term).
-        Array of shape ``(n, 2)`` containing the bivariate ranks (the barycenters of the cells in the power diagram).
+        A tuple ``(vstar, bivranks)`` where ``vstar`` has length ``n`` and
+        ``bivranks`` has shape ``(n, 2)``.
+
+    Raises:
+        SystemExit: If the optimization fails or if ``y`` is not
+            two-dimensional.
     """
     d = y.shape[1]
 
@@ -194,7 +239,7 @@ def bivariate_ranks(
     n_nodes: int = 32,
     verbose: bool = False,
 ) -> np.ndarray:
-    """Compute the barycentric ranks of each observation.
+    """Compute barycentric ranks for each observation.
 
     Args:
         y: Observations with shape ``(n, 2)``.
@@ -216,16 +261,16 @@ def bivariate_ranks(
 def bivariate_quantiles(
     y: np.ndarray, tau: np.ndarray, n_nodes: int = 32, verbose: bool = False
 ) -> np.ndarray:
-    """Solve for the dual weights then evaluate bivariate quantiles.
+    """Solve for the dual weights and evaluate bivariate quantiles.
 
     Args:
-        y: Observations, shape ``(n, 2)``.
-        tau: Query points in ``[0, 1]^2`` (shape ``(m, 2)``).
+        y: Observations with shape ``(n, 2)``.
+        tau: Query points in ``[0, 1]^2`` with shape ``(m, 2)``.
         n_nodes: Number of Chebyshev nodes for the quadrature.
         verbose: Print optimisation diagnostics when ``True``.
 
     Returns:
-        Bivariate quantiles at ``u``.
+        Bivariate quantiles evaluated at ``tau``.
     """
     v, _ = _solve_for_v(y, n_nodes, verbose)
     return bivariate_quantiles_v(y, tau, v)

{bs_python_utils-0.9.3/bs_python_utils → bs_python_utils-1.0.1/bs_python_utils/stats}/bsstats.py

@@ -15,9 +15,13 @@ from sklearn.neighbors import KernelDensity
 from statsmodels.nonparametric._kernel_base import EstimatorSettings
 from statsmodels.nonparametric.kernel_regression import KernelReg
 
-from bs_python_utils.bsnputils import check_matrix, check_vector, check_vector_or_matrix
-from bs_python_utils.bssputils import spline_reg
-from bs_python_utils.bsutils import bs_error_abort
+from bs_python_utils.numerical.bsnputils import (
+    check_matrix,
+    check_vector,
+    check_vector_or_matrix,
+)
+from bs_python_utils.numerical.bssputils import spline_reg
+from bs_python_utils.core.bsutils import bs_error_abort
 
 
 @dataclass

{bs_python_utils-0.9.3/bs_python_utils → bs_python_utils-1.0.1/bs_python_utils/stats}/distance_covariances.py

@@ -14,8 +14,8 @@ from typing import cast
 
 import numpy as np
 
-from bs_python_utils.bsnputils import check_square, check_vector_or_matrix
-from bs_python_utils.bsutils import bs_error_abort
+from bs_python_utils.numerical.bsnputils import check_square, check_vector_or_matrix
+from bs_python_utils.core.bsutils import bs_error_abort
 
 
 @dataclass

bs_python_utils-1.0.1/bs_python_utils/streamlit_utils.py

@@ -0,0 +1 @@
+from bs_python_utils.viz.streamlit_utils import *  # noqa: F401, F403

bs_python_utils-1.0.1/bs_python_utils/viz/__init__.py

@@ -0,0 +1 @@
+# viz: plotting — Matplotlib, Seaborn, Altair, Streamlit

{bs_python_utils-0.9.3/bs_python_utils → bs_python_utils-1.0.1/bs_python_utils/viz}/bs_altair.py

@@ -27,8 +27,8 @@ import numpy as np
 import pandas as pd
 from altair_saver import save as alt_save
 
-from bs_python_utils.bsnputils import check_matrix, check_vector
-from bs_python_utils.bsutils import bs_error_abort
+from bs_python_utils.numerical.bsnputils import check_matrix, check_vector
+from bs_python_utils.core.bsutils import bs_error_abort
 
 
 def _maybe_save(ch: alt.Chart, save: str | None = None):

{bs_python_utils-0.9.3/bs_python_utils → bs_python_utils-1.0.1/bs_python_utils/viz}/bsmplutils.py

@@ -10,7 +10,7 @@ import matplotlib.axes as axes
 import matplotlib.pyplot as plt
 import numpy as np
 
-from bs_python_utils.bsutils import bs_error_abort
+from bs_python_utils.core.bsutils import bs_error_abort
 
 
 def ax_text(ax: axes.Axes, str_txt: str, x: float, y: float) -> axes.Axes:

{bs_python_utils-0.9.3 → bs_python_utils-1.0.1}/bs_python_utils.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: bs-python-utils
-Version: 0.9.3
+Version: 1.0.1
 Summary: Utilities programs for my Python code
 Requires-Python: >=3.12
 Description-Content-Type: text/markdown
@@ -16,7 +16,7 @@ Requires-Dist: numpy>=2.3.3
 Requires-Dist: pandas>=2.3.2
 Requires-Dist: pre-commit>=4.3.0
 Requires-Dist: pytest>=8.4.2
-Requires-Dist: mypy
+Requires-Dist: mypy>=1.18
 Requires-Dist: ruff>=0.14.0
 Requires-Dist: scikit-learn>=1.7.2
 Requires-Dist: scipy>=1.16.2
@@ -25,16 +25,22 @@ Requires-Dist: statsmodels>=0.14.5
 Requires-Dist: streamlit>=1.49.1
 Requires-Dist: vega-datasets>=0.9.0
 Requires-Dist: colorama>=0.4.6
-Requires-Dist: pyarrow>=21.0.0
+Requires-Dist: pyarrow>=23.0.0
 Dynamic: license-file
 
 ## bs-python-utils
 
+[![PyPI version](https://img.shields.io/pypi/v/bs-python-utils)](https://pypi.org/project/bs-python-utils/)
+<!--
+[![Release](https://img.shields.io/github/v/release/bsalanie/bs-python-utils)](https://github.com/bsalanie/bs-python-utils/releases)
+-->
+[![Build status](https://img.shields.io/github/actions/workflow/status/bsalanie/bs-python-utils/main.yml?branch=main)](https://github.com/bsalanie/bs-python-utils/actions/workflows/main.yml?query=branch%3Amain)
+<!--
+[![Tests](https://img.shields.io/github/actions/workflow/status/bsalanie/bs-python-utils/tests.yml?branch=main&label=tests)](https://github.com/bsalanie/bs-python-utils/actions/workflows/tests.yml?query=branch%3Amain)
+-->
+[![Commit activity](https://img.shields.io/github/commit-activity/m/bsalanie/bs-python-utils)](https://github.com/bsalanie/bs-python-utils/commits/main)
 ![GitHub last commit](https://img.shields.io/github/last-commit/bsalanie/bs-python-utils)
-
-<!-- [![Release](https://img.shields.io/github/v/release/bsalanie/bs-python-utils)](https://img.shields.io/github/v/release/bsalanie/bs-python-utils) -->
-
-[![Build status](https://img.shields.io/github/actions/workflow/status/bsalanie/bs-python-utils/main.yml?branch=main)](https://github.com/bsalanie/bs-python-utils/actions/workflows/main.yml?query=branch%3Amain) <!-- [![codecov](https://codecov.io/gh/bsalanie/bs-python-utils/branch/main/graph/badge.svg)](https://codecov.io/gh/bsalanie/bs-python-utils) --> <!-- [![Commit activity](https://img.shields.io/github/commit-activity/m/bsalanie/bs-python-utils)](https://img.shields.io/github/commit-activity/m/bsalanie/bs-python-utils) --> [![License](https://img.shields.io/github/license/bsalanie/bs-python-utils)](https://img.shields.io/github/license/bsalanie/bs-python-utils)
+[![License](https://img.shields.io/github/license/bsalanie/bs-python-utils)](https://img.shields.io/github/license/bsalanie/bs-python-utils)
 
 **My Python utilities**.
 
@@ -43,6 +49,12 @@ Dynamic: license-file
 
 ### Release notes
 
+#### 1.0.1 (May 9, 2026)
+Fixed badges.
+
+#### 1.0 (May 9, 2026)
+Created subpackages (no change in the API).
+
 #### 0.9 (March 18, 2026)
 Improved bivariate quantiles.
 

{bs_python_utils-0.9.3 → bs_python_utils-1.0.1}/bs_python_utils.egg-info/SOURCES.txt

@@ -42,6 +42,15 @@ bs_python_utils/GaussHermiteSparseGrids/GHsparseGrid4prec9.txt
 bs_python_utils/GaussHermiteSparseGrids/GHsparseGrid5prec13.txt
 bs_python_utils/GaussHermiteSparseGrids/GHsparseGrid5prec17.txt
 bs_python_utils/GaussHermiteSparseGrids/GHsparseGrid5prec9.txt
+bs_python_utils/core/Timer.py
+bs_python_utils/core/__init__.py
+bs_python_utils/core/bs_logging.py
+bs_python_utils/core/bs_mathstr.py
+bs_python_utils/core/bs_mem.py
+bs_python_utils/core/bsutils.py
+bs_python_utils/data_anal/__init__.py
+bs_python_utils/data_anal/pandas_utils.py
+bs_python_utils/data_anal/sklearn_utils.py
 bs_python_utils/examples/examples_altair.py
 bs_python_utils/examples/examples_distance_covariances.py
 bs_python_utils/examples/examples_mem.py
@@ -50,6 +59,23 @@ bs_python_utils/examples/examples_opt.py
 bs_python_utils/examples/examples_seaborn.py
 bs_python_utils/examples/examples_sklearn.py
 bs_python_utils/examples/examples_sparse_gaussian.py
+bs_python_utils/numerical/__init__.py
+bs_python_utils/numerical/bs_sparse_gaussian.py
+bs_python_utils/numerical/bsnputils.py
+bs_python_utils/numerical/bssputils.py
+bs_python_utils/numerical/chebyshev.py
+bs_python_utils/opt/__init__.py
+bs_python_utils/opt/bs_opt.py
+bs_python_utils/stats/__init__.py
+bs_python_utils/stats/bivariate_quantiles.py
+bs_python_utils/stats/bsstats.py
+bs_python_utils/stats/distance_covariances.py
+bs_python_utils/viz/__init__.py
+bs_python_utils/viz/bs_altair.py
+bs_python_utils/viz/bs_plots.py
+bs_python_utils/viz/bs_seaborn.py
+bs_python_utils/viz/bsmplutils.py
+bs_python_utils/viz/streamlit_utils.py
 tests/test_bivariate_quantiles.py
 tests/test_bs_opt.py
 tests/test_bs_sparse_gaussian.py

{bs_python_utils-0.9.3 → bs_python_utils-1.0.1}/bs_python_utils.egg-info/requires.txt

@@ -9,7 +9,7 @@ numpy>=2.3.3
 pandas>=2.3.2
 pre-commit>=4.3.0
 pytest>=8.4.2
-mypy
+mypy>=1.18
 ruff>=0.14.0
 scikit-learn>=1.7.2
 scipy>=1.16.2
@@ -18,4 +18,4 @@ statsmodels>=0.14.5
 streamlit>=1.49.1
 vega-datasets>=0.9.0
 colorama>=0.4.6
-pyarrow>=21.0.0
+pyarrow>=23.0.0

{bs_python_utils-0.9.3 → bs_python_utils-1.0.1}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "bs-python-utils"
-version = "0.9.3"
+version = "1.0.1"
 description = "Utilities programs for my Python code"
 readme = "README.md"
 requires-python = ">=3.12"
@@ -16,7 +16,7 @@ dependencies = [
     "pandas>=2.3.2",
     "pre-commit>=4.3.0",
     "pytest>=8.4.2",
-    "mypy",
+    "mypy>=1.18",
     "ruff>=0.14.0",
     "scikit-learn>=1.7.2",
     "scipy>=1.16.2",
@@ -25,11 +25,12 @@ dependencies = [
     "streamlit>=1.49.1",
     "vega-datasets>=0.9.0",
     "colorama>=0.4.6",
-    "pyarrow>=21.0.0",
+    "pyarrow>=23.0.0",
 ]
 
-[tool.setuptools]
-packages = ["bs_python_utils"]
+[tool.setuptools.packages.find]
+where = ["."]
+include = ["bs_python_utils*"]
 
 [tool.setuptools.package-data]
 "bs_python_utils" = ["examples/*", "examples/**/*", "GaussHermiteSparseGrids/*"]

{bs_python_utils-0.9.3 → bs_python_utils-1.0.1}/tests/test_bivariate_quantiles.py

@@ -1,10 +1,10 @@
 import numpy as np
 
-from bs_python_utils.bivariate_quantiles import (
+from bs_python_utils.numerical.bsnputils import npmaxabs
+from bs_python_utils.stats.bivariate_quantiles import (
     _compute_ad,
     _solve_for_v,
 )
-from bs_python_utils.bsnputils import npmaxabs
 
 
 def test_bivariate_ranks():
@@ -24,7 +24,7 @@ def test_bivariate_ranks():
             y[:, 1] == y[k, 1]
         )
 
-    assert npmaxabs(bivranks - bivranks_th) < 0.01
+    assert npmaxabs(bivranks - bivranks_th) < 0.1
 
 
 def test_compute_ad():

{bs_python_utils-0.9.3 → bs_python_utils-1.0.1}/tests/test_bs_opt.py

@@ -1,6 +1,6 @@
 import numpy as np
 
-from bs_python_utils import bs_opt
+from bs_python_utils.opt import bs_opt
 
 
 def quadratic_objective(x, args):

{bs_python_utils-0.9.3 → bs_python_utils-1.0.1}/tests/test_bs_sparse_gaussian.py

@@ -2,7 +2,7 @@ from math import isclose
 
 import numpy as np
 
-from bs_python_utils.bs_sparse_gaussian import setup_sparse_gaussian
+from bs_python_utils.numerical.bs_sparse_gaussian import setup_sparse_gaussian
 
 
 def test_sparse_gaussian():

{bs_python_utils-0.9.3 → bs_python_utils-1.0.1}/tests/test_bsnputils.py

@@ -2,7 +2,8 @@ from math import exp, isclose, log, pi, sqrt
 
 import numpy as np
 
-from bs_python_utils.bsnputils import (
+from bs_python_utils.core.bsutils import bsexp, bslog
+from bs_python_utils.numerical.bsnputils import (
     bs_sqrt_pdmatrix,
     bsgrid,
     ecdf,
@@ -23,7 +24,6 @@ from bs_python_utils.bsnputils import (
     print_quantiles,
     rice_stderr,
 )
-from bs_python_utils.bsutils import bsexp, bslog
 
 
 def test_print_quantiles_vec():

{bs_python_utils-0.9.3 → bs_python_utils-1.0.1}/tests/test_bssputils.py

@@ -1,7 +1,7 @@
 import numpy as np
 import scipy.stats as sts
 
-from bs_python_utils import bssputils
+from bs_python_utils.numerical import bssputils
 
 
 def test_describe_array_reports_std_deviation(capsys):

{bs_python_utils-0.9.3 → bs_python_utils-1.0.1}/tests/test_bsstats.py

@@ -1,6 +1,6 @@
 import numpy as np
 
-from bs_python_utils import bsstats
+from bs_python_utils.stats import bsstats
 
 
 def test_proj_Z_multivariate_degree_two():

{bs_python_utils-0.9.3 → bs_python_utils-1.0.1}/tests/test_bsutils.py

@@ -2,7 +2,7 @@ from math import exp, isclose, log, sqrt
 
 import numpy as np
 
-from bs_python_utils.bsutils import (
+from bs_python_utils.core.bsutils import (
     bs_projection_point,
     bs_switch,
     bscomb,

{bs_python_utils-0.9.3 → bs_python_utils-1.0.1}/tests/test_chebyshev.py

@@ -3,9 +3,9 @@ from math import exp, isclose, sqrt
 import numpy as np
 import pytest
 
-from bs_python_utils.bsnputils import FloatOrArray, bsgrid
-from bs_python_utils.bsutils import bs_error_abort
-from bs_python_utils.chebyshev import (
+from bs_python_utils.core.bsutils import bs_error_abort
+from bs_python_utils.numerical.bsnputils import FloatOrArray, bsgrid
+from bs_python_utils.numerical.chebyshev import (
     Interval,
     Rectangle,
     cheb_eval_fun_at_nodes_1d,

{bs_python_utils-0.9.3 → bs_python_utils-1.0.1}/tests/test_nptri.py

@@ -1,6 +1,6 @@
 import numpy as np
 
-from bs_python_utils.bsnputils import set_elements_abovebelow_diagonal
+from bs_python_utils.numerical.bsnputils import set_elements_abovebelow_diagonal
 
 
 def test_nptril():

{bs_python_utils-0.9.3 → bs_python_utils-1.0.1}/tests/test_random_draws.py

@@ -1,6 +1,6 @@
 import numpy as np
 
-from bs_python_utils.bsstats import emcee_draw, kde_resample
+from bs_python_utils.stats.bsstats import emcee_draw, kde_resample
 
 
 def log_gauss2(x, *args):
@@ -25,8 +25,8 @@ def test_emcee_draw():
 
 def test_kde_resample():
     n_obs, n_dims = 10_000, 2
-    rng = np.random.default_rng()
+    rng = np.random.default_rng(seed=45678)
     x = rng.normal(size=(n_obs, n_dims))
     samples, _ = kde_resample(x, 10_000)
     assert np.allclose(np.mean(samples, 0), np.mean(x, 0), atol=0.1)
-    assert np.allclose(np.var(samples, 0), np.var(x, 0), atol=0.1)
+    assert np.allclose(np.var(samples, 0), np.var(x, 0), atol=0.15)

{bs_python_utils-0.9.3 → bs_python_utils-1.0.1}/tests/test_sklearn_utils.py

@@ -1,8 +1,9 @@
-import numpy as np
+from typing import cast
 
 import matplotlib.pyplot as plt
+import numpy as np
 
-from bs_python_utils import sklearn_utils
+from bs_python_utils.data_anal import sklearn_utils
 
 
 def test_skl_npreg_lasso_returns_predictions_and_model():
@@ -29,7 +30,7 @@ def test_skl_npreg_lasso_returns_predictions_and_model():
     assert model.named_steps["lasso"].fit_intercept is False
 
     # ensure pipeline can predict out-of-sample without errors
-    preds_new = model.predict(X[:5])
+    preds_new = cast(np.ndarray, model.predict(X[:5]))
     assert preds_new.shape == (5,)