britekit 0.0.6__tar.gz → 0.0.7__tar.gz

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  1. {britekit-0.0.6 → britekit-0.0.7}/PKG-INFO +1 -1
  2. {britekit-0.0.6 → britekit-0.0.7}/britekit/__about__.py +1 -1
  3. {britekit-0.0.6 → britekit-0.0.7}/britekit/commands/_tune.py +2 -0
  4. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/core/tuner.py +17 -2
  5. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/models/base_model.py +3 -2
  6. {britekit-0.0.6 → britekit-0.0.7}/.gitignore +0 -0
  7. {britekit-0.0.6 → britekit-0.0.7}/LICENSE.txt +0 -0
  8. {britekit-0.0.6 → britekit-0.0.7}/README.md +0 -0
  9. {britekit-0.0.6 → britekit-0.0.7}/britekit/__init__.py +0 -0
  10. {britekit-0.0.6 → britekit-0.0.7}/britekit/commands/__init__.py +0 -0
  11. {britekit-0.0.6 → britekit-0.0.7}/britekit/commands/_analyze.py +0 -0
  12. {britekit-0.0.6 → britekit-0.0.7}/britekit/commands/_audioset.py +0 -0
  13. {britekit-0.0.6 → britekit-0.0.7}/britekit/commands/_calibrate.py +0 -0
  14. {britekit-0.0.6 → britekit-0.0.7}/britekit/commands/_ckpt_ops.py +0 -0
  15. {britekit-0.0.6 → britekit-0.0.7}/britekit/commands/_db_add.py +0 -0
  16. {britekit-0.0.6 → britekit-0.0.7}/britekit/commands/_db_delete.py +0 -0
  17. {britekit-0.0.6 → britekit-0.0.7}/britekit/commands/_embed.py +0 -0
  18. {britekit-0.0.6 → britekit-0.0.7}/britekit/commands/_extract.py +0 -0
  19. {britekit-0.0.6 → britekit-0.0.7}/britekit/commands/_find_dup.py +0 -0
  20. {britekit-0.0.6 → britekit-0.0.7}/britekit/commands/_inat.py +0 -0
  21. {britekit-0.0.6 → britekit-0.0.7}/britekit/commands/_init.py +0 -0
  22. {britekit-0.0.6 → britekit-0.0.7}/britekit/commands/_pickle.py +0 -0
  23. {britekit-0.0.6 → britekit-0.0.7}/britekit/commands/_plot.py +0 -0
  24. {britekit-0.0.6 → britekit-0.0.7}/britekit/commands/_reextract.py +0 -0
  25. {britekit-0.0.6 → britekit-0.0.7}/britekit/commands/_reports.py +0 -0
  26. {britekit-0.0.6 → britekit-0.0.7}/britekit/commands/_search.py +0 -0
  27. {britekit-0.0.6 → britekit-0.0.7}/britekit/commands/_train.py +0 -0
  28. {britekit-0.0.6 → britekit-0.0.7}/britekit/commands/_wav2mp3.py +0 -0
  29. {britekit-0.0.6 → britekit-0.0.7}/britekit/commands/_xeno.py +0 -0
  30. {britekit-0.0.6 → britekit-0.0.7}/britekit/commands/_youtube.py +0 -0
  31. {britekit-0.0.6 → britekit-0.0.7}/britekit/core/__init__.py +0 -0
  32. {britekit-0.0.6 → britekit-0.0.7}/britekit/install/data/audioset/class_inclusion.csv +0 -0
  33. {britekit-0.0.6 → britekit-0.0.7}/britekit/install/data/audioset/class_list.csv +0 -0
  34. {britekit-0.0.6 → britekit-0.0.7}/britekit/install/data/audioset/curated/aircraft.csv +0 -0
  35. {britekit-0.0.6 → britekit-0.0.7}/britekit/install/data/audioset/curated/car.csv +0 -0
  36. {britekit-0.0.6 → britekit-0.0.7}/britekit/install/data/audioset/curated/chainsaw.csv +0 -0
  37. {britekit-0.0.6 → britekit-0.0.7}/britekit/install/data/audioset/curated/cow.csv +0 -0
  38. {britekit-0.0.6 → britekit-0.0.7}/britekit/install/data/audioset/curated/cricket.csv +0 -0
  39. {britekit-0.0.6 → britekit-0.0.7}/britekit/install/data/audioset/curated/dog.csv +0 -0
  40. {britekit-0.0.6 → britekit-0.0.7}/britekit/install/data/audioset/curated/rain.csv +0 -0
  41. {britekit-0.0.6 → britekit-0.0.7}/britekit/install/data/audioset/curated/rooster.csv +0 -0
  42. {britekit-0.0.6 → britekit-0.0.7}/britekit/install/data/audioset/curated/sheep.csv +0 -0
  43. {britekit-0.0.6 → britekit-0.0.7}/britekit/install/data/audioset/curated/siren.csv +0 -0
  44. {britekit-0.0.6 → britekit-0.0.7}/britekit/install/data/audioset/curated/speech.csv +0 -0
  45. {britekit-0.0.6 → britekit-0.0.7}/britekit/install/data/audioset/curated/truck.csv +0 -0
  46. {britekit-0.0.6 → britekit-0.0.7}/britekit/install/data/audioset/curated/wind.csv +0 -0
  47. {britekit-0.0.6 → britekit-0.0.7}/britekit/install/data/audioset/unbalanced_train_segments.csv +0 -0
  48. {britekit-0.0.6 → britekit-0.0.7}/britekit/install/data/classes.csv +0 -0
  49. {britekit-0.0.6 → britekit-0.0.7}/britekit/install/data/ignore.txt +0 -0
  50. {britekit-0.0.6 → britekit-0.0.7}/britekit/install/yaml/base_config.yaml +0 -0
  51. {britekit-0.0.6 → britekit-0.0.7}/britekit/install/yaml/samples/cfg_infer.yaml +0 -0
  52. {britekit-0.0.6 → britekit-0.0.7}/britekit/install/yaml/samples/train_dla.yaml +0 -0
  53. {britekit-0.0.6 → britekit-0.0.7}/britekit/install/yaml/samples/train_effnet.yaml +0 -0
  54. {britekit-0.0.6 → britekit-0.0.7}/britekit/install/yaml/samples/train_gernet.yaml +0 -0
  55. {britekit-0.0.6 → britekit-0.0.7}/britekit/install/yaml/samples/train_hgnet.yaml +0 -0
  56. {britekit-0.0.6 → britekit-0.0.7}/britekit/install/yaml/samples/train_timm.yaml +0 -0
  57. {britekit-0.0.6 → britekit-0.0.7}/britekit/install/yaml/samples/train_vovnet.yaml +0 -0
  58. {britekit-0.0.6 → britekit-0.0.7}/britekit/install/yaml/samples/tune_dropout.yaml +0 -0
  59. {britekit-0.0.6 → britekit-0.0.7}/britekit/install/yaml/samples/tune_learning_rate.yaml +0 -0
  60. {britekit-0.0.6 → britekit-0.0.7}/britekit/install/yaml/samples/tune_optimizer.yaml +0 -0
  61. {britekit-0.0.6 → britekit-0.0.7}/britekit/install/yaml/samples/tune_smooth.yaml +0 -0
  62. {britekit-0.0.6 → britekit-0.0.7}/install/data/audioset/class_inclusion.csv +0 -0
  63. {britekit-0.0.6 → britekit-0.0.7}/install/data/audioset/class_list.csv +0 -0
  64. {britekit-0.0.6 → britekit-0.0.7}/install/data/audioset/curated/aircraft.csv +0 -0
  65. {britekit-0.0.6 → britekit-0.0.7}/install/data/audioset/curated/car.csv +0 -0
  66. {britekit-0.0.6 → britekit-0.0.7}/install/data/audioset/curated/chainsaw.csv +0 -0
  67. {britekit-0.0.6 → britekit-0.0.7}/install/data/audioset/curated/cow.csv +0 -0
  68. {britekit-0.0.6 → britekit-0.0.7}/install/data/audioset/curated/cricket.csv +0 -0
  69. {britekit-0.0.6 → britekit-0.0.7}/install/data/audioset/curated/dog.csv +0 -0
  70. {britekit-0.0.6 → britekit-0.0.7}/install/data/audioset/curated/rain.csv +0 -0
  71. {britekit-0.0.6 → britekit-0.0.7}/install/data/audioset/curated/rooster.csv +0 -0
  72. {britekit-0.0.6 → britekit-0.0.7}/install/data/audioset/curated/sheep.csv +0 -0
  73. {britekit-0.0.6 → britekit-0.0.7}/install/data/audioset/curated/siren.csv +0 -0
  74. {britekit-0.0.6 → britekit-0.0.7}/install/data/audioset/curated/speech.csv +0 -0
  75. {britekit-0.0.6 → britekit-0.0.7}/install/data/audioset/curated/truck.csv +0 -0
  76. {britekit-0.0.6 → britekit-0.0.7}/install/data/audioset/curated/wind.csv +0 -0
  77. {britekit-0.0.6 → britekit-0.0.7}/install/data/audioset/unbalanced_train_segments.csv +0 -0
  78. {britekit-0.0.6 → britekit-0.0.7}/install/data/classes.csv +0 -0
  79. {britekit-0.0.6 → britekit-0.0.7}/install/data/ignore.txt +0 -0
  80. {britekit-0.0.6 → britekit-0.0.7}/install/yaml/base_config.yaml +0 -0
  81. {britekit-0.0.6 → britekit-0.0.7}/install/yaml/samples/cfg_infer.yaml +0 -0
  82. {britekit-0.0.6 → britekit-0.0.7}/install/yaml/samples/train_dla.yaml +0 -0
  83. {britekit-0.0.6 → britekit-0.0.7}/install/yaml/samples/train_effnet.yaml +0 -0
  84. {britekit-0.0.6 → britekit-0.0.7}/install/yaml/samples/train_gernet.yaml +0 -0
  85. {britekit-0.0.6 → britekit-0.0.7}/install/yaml/samples/train_hgnet.yaml +0 -0
  86. {britekit-0.0.6 → britekit-0.0.7}/install/yaml/samples/train_timm.yaml +0 -0
  87. {britekit-0.0.6 → britekit-0.0.7}/install/yaml/samples/train_vovnet.yaml +0 -0
  88. {britekit-0.0.6 → britekit-0.0.7}/install/yaml/samples/tune_dropout.yaml +0 -0
  89. {britekit-0.0.6 → britekit-0.0.7}/install/yaml/samples/tune_learning_rate.yaml +0 -0
  90. {britekit-0.0.6 → britekit-0.0.7}/install/yaml/samples/tune_optimizer.yaml +0 -0
  91. {britekit-0.0.6 → britekit-0.0.7}/install/yaml/samples/tune_smooth.yaml +0 -0
  92. {britekit-0.0.6 → britekit-0.0.7}/pyproject.toml +0 -0
  93. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/cli.py +0 -0
  94. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/core/analyzer.py +0 -0
  95. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/core/audio.py +0 -0
  96. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/core/augmentation.py +0 -0
  97. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/core/base_config.py +0 -0
  98. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/core/config_loader.py +0 -0
  99. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/core/data_module.py +0 -0
  100. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/core/dataset.py +0 -0
  101. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/core/exceptions.py +0 -0
  102. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/core/pickler.py +0 -0
  103. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/core/plot.py +0 -0
  104. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/core/predictor.py +0 -0
  105. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/core/reextractor.py +0 -0
  106. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/core/trainer.py +0 -0
  107. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/core/util.py +0 -0
  108. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/models/dla.py +0 -0
  109. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/models/effnet.py +0 -0
  110. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/models/gernet.py +0 -0
  111. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/models/head_factory.py +0 -0
  112. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/models/hgnet.py +0 -0
  113. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/models/model_loader.py +0 -0
  114. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/models/timm_model.py +0 -0
  115. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/models/vovnet.py +0 -0
  116. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/occurrence_db/occurrence_data_provider.py +0 -0
  117. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/occurrence_db/occurrence_db.py +0 -0
  118. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/testing/base_tester.py +0 -0
  119. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/testing/per_minute_tester.py +0 -0
  120. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/testing/per_recording_tester.py +0 -0
  121. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/testing/per_segment_tester.py +0 -0
  122. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/training_db/extractor.py +0 -0
  123. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/training_db/training_data_provider.py +0 -0
  124. {britekit-0.0.6 → britekit-0.0.7}/src/britekit/training_db/training_db.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: britekit
3
- Version: 0.0.6
3
+ Version: 0.0.7
4
4
  Summary: Core functions for bioacoustic recognizers.
5
5
  Project-URL: Documentation, https://github.com/jhuus/BriteKit#readme
6
6
  Project-URL: Issues, https://github.com/jhuus/BriteKit/issues
@@ -1,4 +1,4 @@
1
1
  # SPDX-FileCopyrightText: 2025-present Jan Huus <jhuus1@gmail.com>
2
2
  #
3
3
  # SPDX-License-Identifier: MIT
4
- __version__ = "0.0.6"
4
+ __version__ = "0.0.7"
@@ -9,6 +9,7 @@ from typing import Optional
9
9
 
10
10
  import click
11
11
 
12
+ from britekit.core.config_loader import get_config
12
13
  from britekit.core import util
13
14
 
14
15
 
@@ -57,6 +58,7 @@ def tune(
57
58
  from britekit.core.tuner import Tuner
58
59
 
59
60
  try:
61
+ cfg, _ = get_config(cfg_path)
60
62
  if extract and skip_training:
61
63
  logging.error(
62
64
  "Performing spectrogram extract is incompatible with skipping training."
@@ -1,7 +1,6 @@
1
1
  # Defer some imports to improve initialization performance.
2
2
  import copy
3
3
  import logging
4
- import os
5
4
  from pathlib import Path
6
5
  import random
7
6
  import re
@@ -263,6 +262,21 @@ class Tuner:
263
262
  self.trial_num += 1
264
263
  self.trial_metrics[self.trial_num] = {}
265
264
 
265
+ @staticmethod
266
+ def _find_latest_version_dir(root):
267
+ root = Path(root)
268
+ version_dirs = []
269
+ for d in root.iterdir():
270
+ if d.is_dir() and d.name.startswith("version"):
271
+ m = re.search(r"\d+", d.name)
272
+ if m:
273
+ version_dirs.append((int(m.group()), d))
274
+
275
+ assert version_dirs, "Failed to find training log directory"
276
+
277
+ # Sort numerically by the extracted version number
278
+ return max(version_dirs, key=lambda x: x[0])[1].name
279
+
266
280
  def _run_test(self):
267
281
  """
268
282
  Run inference with the generated checkpoints and return the selected metric.
@@ -270,10 +284,11 @@ class Tuner:
270
284
  from britekit.core.analyzer import Analyzer
271
285
  from britekit.testing.per_segment_tester import PerSegmentTester
272
286
 
273
- train_dir = sorted(os.listdir(self.train_log_dir), key=natural_key)[-1]
287
+ train_dir = self._find_latest_version_dir(self.train_log_dir)
274
288
  self.cfg.misc.ckpt_folder = str(
275
289
  Path(self.train_log_dir) / train_dir / "checkpoints"
276
290
  )
291
+ print(f"{self.cfg.misc.ckpt_folder=}")
277
292
  self.cfg.infer.min_score = 0
278
293
 
279
294
  # suppress console output during inference and test analysis
@@ -11,7 +11,6 @@ import torch
11
11
  from torch import nn
12
12
  import torch.nn.functional as F
13
13
  from torch.optim.lr_scheduler import CosineAnnealingLR, LinearLR, SequentialLR
14
- from torchmetrics.functional import accuracy
15
14
 
16
15
  from britekit.core.config_loader import get_config
17
16
  from britekit.core import util
@@ -195,7 +194,9 @@ class BaseModel(pl.LightningModule):
195
194
  if self.multi_label:
196
195
  preds = torch.sigmoid(seg_logits)
197
196
  roc_auc = metrics.roc_auc_score(y.cpu(), preds.cpu(), average="micro")
198
- self.log("test_roc_auc", roc_auc, on_step=False, on_epoch=True, prog_bar=True)
197
+ self.log(
198
+ "test_roc_auc", roc_auc, on_step=False, on_epoch=True, prog_bar=True
199
+ )
199
200
 
200
201
  return loss
201
202
 
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