braynix-dev-mcp 2.2.0__tar.gz

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  1. braynix_dev_mcp-2.2.0/LICENSE +21 -0
  2. braynix_dev_mcp-2.2.0/PKG-INFO +451 -0
  3. braynix_dev_mcp-2.2.0/README.md +430 -0
  4. braynix_dev_mcp-2.2.0/app.py +60 -0
  5. braynix_dev_mcp-2.2.0/brain/__init__.py +7 -0
  6. braynix_dev_mcp-2.2.0/brain/dependency.py +292 -0
  7. braynix_dev_mcp-2.2.0/brain/guardian.py +124 -0
  8. braynix_dev_mcp-2.2.0/brain/handoff_engine.py +235 -0
  9. braynix_dev_mcp-2.2.0/brain/orchestrator.py +406 -0
  10. braynix_dev_mcp-2.2.0/brain/phase_manager.py +285 -0
  11. braynix_dev_mcp-2.2.0/brain/prd_manager.py +151 -0
  12. braynix_dev_mcp-2.2.0/brain/project_readiness.py +1071 -0
  13. braynix_dev_mcp-2.2.0/brain/requirements.py +300 -0
  14. braynix_dev_mcp-2.2.0/brain/sync_engine.py +554 -0
  15. braynix_dev_mcp-2.2.0/brain/todo_engine.py +355 -0
  16. braynix_dev_mcp-2.2.0/braynix_dev_mcp.egg-info/PKG-INFO +451 -0
  17. braynix_dev_mcp-2.2.0/braynix_dev_mcp.egg-info/SOURCES.txt +38 -0
  18. braynix_dev_mcp-2.2.0/braynix_dev_mcp.egg-info/dependency_links.txt +1 -0
  19. braynix_dev_mcp-2.2.0/braynix_dev_mcp.egg-info/entry_points.txt +3 -0
  20. braynix_dev_mcp-2.2.0/braynix_dev_mcp.egg-info/requires.txt +3 -0
  21. braynix_dev_mcp-2.2.0/braynix_dev_mcp.egg-info/top_level.txt +9 -0
  22. braynix_dev_mcp-2.2.0/cli.py +503 -0
  23. braynix_dev_mcp-2.2.0/context.py +409 -0
  24. braynix_dev_mcp-2.2.0/prompts/__init__.py +3 -0
  25. braynix_dev_mcp-2.2.0/prompts/definitions.py +136 -0
  26. braynix_dev_mcp-2.2.0/pyproject.toml +63 -0
  27. braynix_dev_mcp-2.2.0/resources/__init__.py +3 -0
  28. braynix_dev_mcp-2.2.0/resources/definitions.py +35 -0
  29. braynix_dev_mcp-2.2.0/security.py +136 -0
  30. braynix_dev_mcp-2.2.0/server.py +322 -0
  31. braynix_dev_mcp-2.2.0/setup.cfg +4 -0
  32. braynix_dev_mcp-2.2.0/tests/test_optimizations.py +113 -0
  33. braynix_dev_mcp-2.2.0/tests/test_v2_features.py +259 -0
  34. braynix_dev_mcp-2.2.0/tools/__init__.py +6 -0
  35. braynix_dev_mcp-2.2.0/tools/context_mgmt.py +257 -0
  36. braynix_dev_mcp-2.2.0/tools/desktop_ops.py +347 -0
  37. braynix_dev_mcp-2.2.0/tools/file_ops.py +413 -0
  38. braynix_dev_mcp-2.2.0/tools/git_ops.py +169 -0
  39. braynix_dev_mcp-2.2.0/tools/search.py +122 -0
  40. braynix_dev_mcp-2.2.0/tools/terminal.py +108 -0
@@ -0,0 +1,21 @@
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+ MIT License
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+
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+ Copyright (c) 2026 Pranjal Yadav
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+
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+ Permission is hereby granted, free of charge, to any person obtaining a copy
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+ of this software and associated documentation files (the "Software"), to deal
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+ in the Software without restriction, including without limitation the rights
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+ to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
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+ copies of the Software, and to permit persons to whom the Software is
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+ furnished to do so, subject to the following conditions:
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+
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+ The above copyright notice and this permission notice shall be included in all
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+ copies or substantial portions of the Software.
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+
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+ THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
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+ IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
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+ FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
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+ AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
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+ LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
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+ OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
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+ SOFTWARE.
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+ Metadata-Version: 2.4
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+ Name: braynix-dev-mcp
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+ Version: 2.2.0
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+ Summary: AI Engineering Operating System and local MCP server.
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+ Author-email: Pranjal Yadav <2k24.cs1l.2410719@gmail.com>
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+ Maintainer-email: Pranjal Yadav <2k24.cs1l.2410719@gmail.com>
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+ License-Expression: MIT
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+ Project-URL: Homepage, https://dev-mcp.me
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+ Project-URL: Repository, https://github.com/pranjal2410719/dev-mcp
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+ Project-URL: Issues, https://github.com/pranjal2410719/dev-mcp/issues
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+ Keywords: mcp,model-context-protocol,fastmcp,ai-engineering,developer-tools,project-management
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+ Classifier: Programming Language :: Python :: 3
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+ Classifier: Operating System :: OS Independent
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+ Requires-Python: >=3.10
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+ Description-Content-Type: text/markdown
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+ License-File: LICENSE
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+ Requires-Dist: fastmcp<4,>=3.4.2
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+ Requires-Dist: readchar>=4.0.0
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+ Requires-Dist: rich>=13.7.0
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+ Dynamic: license-file
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+
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+ <!-- mcp-name: io.github.pranjal2410719/dev-mcp -->
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+
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+ # ๐Ÿง  dev-mcp: AI Engineering Operating System (v2.2.0)
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+
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+ `dev-mcp` is a production-grade **Model Context Protocol (MCP)** server that turns your AI assistants (Claude, Cursor, Gemini, Cline, Roo Code, Windsurf, Antigravity CLI) into autonomous **Technical Project Managers and Desktop Automation Engineers**.
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+
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+ Rather than treating LLMs as stateless code generators, `dev-mcp` establishes a persistent **Project Brain** directly in your workspace repository. It preserves context, PRD specifications, phase timelines, task dependencies, architectural guards, and desktop verification states across multiple AI sessions and platforms.
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+
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+ ---
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+
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+ ## ๐Ÿ‘ฅ Author & Maintainer Profile
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+
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+ For inquiries, support, or technical contributions, reach out to:
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+
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+ * **Name:** Pranjal Yadav
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+ * **Email:** [2k24.cs1l.2410719@gmail.com](mailto:2k24.cs1l.2410719@gmail.com)
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+ * **LinkedIn:** [linkedin.com/in/-pranjal22/](https://www.linkedin.com/in/-pranjal22/)
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+ * **GitHub:** [github.com/pranjal2410719](https://github.com/pranjal2410719)
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+
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+ ---
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+
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+ ## โšก What's New in v2.1.0?
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+
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+ * **91 Registered MCP Tools across 18 specialized modules.**
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+ * **Dynamic Tool Profiling (`DEV_MCP_PROFILE`)**: Slash LLM prompt token consumption by up to **75%** by loading only the tools relevant to your workflow (`code`, `planning`, `audit`, `desktop`, or `all`).
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+ * **Desktop GUI Automation & Verification (`tools/desktop_ops.py`)**: 16 dedicated tools plus a universal dispatcher (`desktop_action`) integrating with `agent-desktop` (Linux AT-SPI / X11 / Wayland, macOS, Windows) for 100% full-coverage GUI inspection, clicking, typing, shortcut dispatching, and window automation.
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+ * **High-Speed Filesystem & Search**:
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+ - **26.2ร— faster** path validation in `security.py` (0.087ms vs 2.28ms).
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+ - Sliced reads (`start_line`, `end_line`), line numbering, and safety truncation (>2,500 lines).
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+ - Atomic writing via temporary files and `os.replace`.
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+ - In-place string editing with exact `count` control and whitespace mismatch assistance.
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+ - Multi-file atomic batch replacements (`batch_replace`).
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+ - File metadata inspection (`file_info`).
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+ - Automatic noise filtering (`.git`, `node_modules`, `__pycache__`, `.venv`, `.next`, `dist`, `build`).
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+ - Native Ripgrep (`rg`) search with Python regex fallback.
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+ * **AST Dependency & Blast Radius Caching**: `mtime`-backed AST parse caching (`_FILE_PARSE_CACHE`) reduces dependency traversal times to sub-millisecond speeds.
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+ * **Persistent Git Hook Automation (`install_git_hooks`)**: Automatically generates a Git pre-commit hook that syncs `.project_brain` on every native terminal commit.
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+
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+ ---
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+
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+ ## ๐Ÿ—๏ธ Architecture Overview
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+
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+ ```text
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+ Developer / AI Host Client
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+ (Cursor, Claude Desktop, Windsurf, Antigravity CLI)
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+ โ”‚
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+ โ–ผ
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+ dev-mcp Server
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+ (FastMCP 3.4.2 ยท Python 3.10+)
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+ โ”‚
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+ โ”Œโ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”ผโ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”
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+ โ”‚ โ”‚ โ”‚
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+ โ–ผ โ–ผ โ–ผ
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+ Project Workspace Security Sandbox Desktop Automation
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+ โ”œโ”€โ”€ Source Files โ”œโ”€โ”€ Path Jailing (safe) โ”œโ”€โ”€ agent-desktop CLI
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+ โ”œโ”€โ”€ Git Repository โ”œโ”€โ”€ Allowed Dirs (lab) โ”œโ”€โ”€ AT-SPI Accessibility
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+ โ””โ”€โ”€ .project_brain/ โ””โ”€โ”€ Command Filter โ””โ”€โ”€ Screen / Window Ops
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+ โ”œโ”€โ”€ config.yaml
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+ โ”œโ”€โ”€ prd/
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+ โ”œโ”€โ”€ tasks/
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+ โ””โ”€โ”€ handoffs/
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+ ```
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+
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+ ---
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+
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+ ## ๐ŸŒŸ Enhanced Startup Banner
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+
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+ On server boot, `dev-mcp` renders a rich visual banner with active profile status and host diagnostics:
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+
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+ ```bash
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+ โ•ญโ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ•ฎ
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+ โ”‚ โ”‚
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+ โ”‚ โ–„โ–€โ–€ โ–„โ–€โ–ˆ โ–ˆโ–€โ–€ โ–€โ–ˆโ–€ โ–ˆโ–€โ–„โ–€โ–ˆ โ–ˆโ–€โ–€ โ–ˆโ–€โ–ˆ โ”‚
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+ โ”‚ โ–ˆโ–€ โ–ˆโ–€โ–ˆ โ–„โ–„โ–ˆ โ–ˆ โ–ˆ โ–€ โ–ˆ โ–ˆโ–„โ–„ โ–ˆโ–€โ–€ โ”‚
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+ โ”‚ โ”‚
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+ โ”‚ FastMCP 3.4.2 โ”‚
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+ โ”‚ https://gofastmcp.com โ”‚
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+ โ”‚ โ”‚
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+ โ”‚ ๐Ÿ–ฅ Server: dev-mcp, 3.4.2 โ”‚
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+ โ”‚ ๐ŸŽฏ Profile: ALL (91 Tools / 18 Modules) โ”‚
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+ โ”‚ ๐Ÿš€ Deploy free: https://horizon.prefect.io โ”‚
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+ โ”‚ โ”‚
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+ โ•ฐโ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ•ฏ
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+ ```
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+
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+ ---
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+
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+ ## ๐ŸŽฏ Tool Profiles & Token Optimization (`DEV_MCP_PROFILE`)
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+
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+ Loading 91 tools into an LLM context consumes ~12,500 system prompt tokens on every turn. Set the `DEV_MCP_PROFILE` environment variable in your client configuration to load only what you need:
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+
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+ | Profile | Token Overhead | Reduction | Modules Loaded | Primary Use Case |
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+ | :--- | :--- | :--- | :--- | :--- |
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+ | `code` | ~4,200 tokens | **66.4%** | File Ops, Search, Context, Git Ops, Terminal | Fast daily coding and refactoring sprints |
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+ | `planning` | ~3,800 tokens | **69.6%** | PRD Manager, Todo Engine, Phase Manager, Context | Technical project management and roadmaps |
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+ | `audit` | ~4,500 tokens | **64.0%** | Readiness, Guardian, Dependency, Doctor, Outcome | Architecture review and security audits |
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+ | `desktop` | ~3,600 tokens | **71.2%** | Desktop Ops, Terminal, File Ops | GUI testing and desktop automation |
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+ | `all` (default) | ~12,500 tokens | 0% | All 18 modules (91 tools) | Full autonomous development workflows |
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+
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+ To check the active profile programmatically, call `get_dev_mcp_profile()`.
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+
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+ ---
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+
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+ ## ๐Ÿ•น๏ธ Interactive Keyboard Shortcut Guide (`dev-mcp-guide`)
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+
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+ Launch the built-in interactive terminal helper at any time:
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+ ```bash
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+ dev-mcp-guide
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+ ```
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+ Or, while running the `dev-mcp` server interactively in a terminal, press `?`, `h`, or `/` to display the modal overlay.
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+
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+ * **โ† / โ†’** or **Tab**: Switch tabs (General, Commands, Shortcuts).
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+ * **โ†‘ / โ†“**: Scroll list entries.
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+ * **esc / q**: Return to the server loop.
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+
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+ ---
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+
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+ ## ๐Ÿš€ Full Setup & Installation
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+
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+ ### 1. Prerequisites
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+ - **Python 3.10+**
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+ - **Git**
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+ - *(Optional)* **agent-desktop** (`npm install -g agent-desktop`) for GUI testing on Linux, macOS, or Windows.
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+ - *(Optional)* **ripgrep** (`sudo apt install ripgrep`) for high-speed file searches.
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+
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+ ### 2. Installation Options
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+
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+ **Package Installation (PyPI: `braynix-dev-mcp`)**
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+ ```bash
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+ # One-time installation
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+ uv tool install braynix-dev-mcp
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+
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+ # Run the server
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+ dev-mcp
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+
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+ # Or run without a permanent installation
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+ uvx --from braynix-dev-mcp dev-mcp
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+
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+ # Open the interactive guide
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+ dev-mcp-guide
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+ ```
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+
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+ Alternatively using `pip` or `pipx`:
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+ ```bash
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+ pipx install braynix-dev-mcp
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+ # or in a virtualenv:
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+ pip install braynix-dev-mcp
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+ ```
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+
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+ **Local Development Clone**
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+ ```bash
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+ # Clone the repository
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+ git clone https://github.com/pranjal2410719/dev-mcp.git
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+ cd dev-mcp
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+
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+ # Setup virtual environment with uv
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+ uv venv
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+ source .venv/bin/activate
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+ uv pip install -e .
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+
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+ # Or using standard python
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+ python3 -m venv .venv
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+ source .venv/bin/activate
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+ pip install -e .
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+ ```
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+
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+ ---
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+
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+ ## โš™๏ธ Configuring AI Clients
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+
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+ Clients can invoke `dev-mcp` directly (if installed globally or in PATH) or via its virtual environment Python executable.
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+
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+ ### 1. Claude Desktop
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+ Add to `~/.config/Claude/claude_desktop_config.json` (Linux/macOS) or `%APPDATA%\Claude\claude_desktop_config.json` (Windows):
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+ ```json
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+ {
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+ "mcpServers": {
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+ "dev-mcp": {
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+ "command": "dev-mcp",
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+ "env": {
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+ "DEV_MCP_PROFILE": "all"
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+ }
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+ }
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+ }
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+ }
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+ ```
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+ *(If running from a local source checkout, set `"command": "/path/to/dev-mcp/.venv/bin/python"` and `"args": ["/path/to/dev-mcp/server.py"]`)*
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+
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+ ### 2. Cursor
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+ 1. Go to **Settings** โ†’ **Features** โ†’ **MCP**.
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+ 2. Click **+ Add New MCP Server**.
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+ 3. Set Name to `dev-mcp`, Type to `command`, and Command to:
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+ ```bash
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+ dev-mcp
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+ ```
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+ *(or `/path/to/dev-mcp/.venv/bin/python /path/to/dev-mcp/server.py` for source checkouts)*
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+
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+ ### 3. Windsurf
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+ Add to your `mcp_config.json`:
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+ ```json
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+ {
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+ "mcpServers": {
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+ "dev-mcp": {
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+ "command": "dev-mcp",
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+ "env": {
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+ "DEV_MCP_PROFILE": "code"
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+ }
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+ }
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+ }
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+ }
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+ ```
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+
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+ ### 4. Antigravity CLI (Google DeepMind)
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+ Add to `~/.gemini/antigravity-cli/mcp_config.json`:
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+ ```json
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+ {
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+ "mcpServers": {
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+ "dev-mcp": {
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+ "command": "dev-mcp"
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+ }
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+ }
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+ }
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+ ```
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+
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+ > **Host Client vs MCP Server Boundary:** Slash commands (`/goal`, `/schedule`, `/grill-me`, `/teamwork`, `/learn`) are specialized execution loops of host clients like Antigravity CLI. Dev MCP provides the 91 deterministic MCP tools, state persistence (`.project_brain/`), and safety guardrails that host agents invoke during those workflows.
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+
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+ ---
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+
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+ ## ๐Ÿ‘‘ The Onboarding & Execution Workflow
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+
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+ ```text
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+ assess_project_readiness()
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+ โ”‚
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+ โ”Œโ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”ดโ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”
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+ โ–ผ (If score < 80, empty) โ–ผ (If score < 80, legacy)
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+ bootstrap_project() adopt_existing_project()
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+ โ”‚ โ”‚
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+ โ””โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”ฌโ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”€โ”˜
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+ โ–ผ
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+ doctor() (diagnostics)
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+ โ”‚
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+ โ–ผ
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+ start_session()
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+ โ”‚
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+ โ–ผ
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+ project_dashboard()
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+ โ”‚
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+ โ–ผ
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+ next_best_action()
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+ โ”‚
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+ โ–ผ
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+ [Sync Plan] โ”€โ”€โ–บ sync_workspace()
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+ โ”‚
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+ โ–ผ
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+ [Audit Code] โ”€โ”€โ–บ verify_work()
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+ โ”‚
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+ โ–ผ
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+ [GUI Verification] โ”€โ”€โ–บ desktop_verify_element()
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+ โ”‚
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+ โ–ผ
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+ [Audit Goal] โ”€โ”€โ–บ verify_outcome()
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+ โ”‚
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+ โ–ผ
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+ end_session()
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+ โ”‚
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+ โ–ผ
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+ prepare_commit() โ”€โ”€โ–บ commit_changes()
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+ ```
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+
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+ ---
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+
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+ ## ๐Ÿ› ๏ธ Complete MCP Tool Catalog (91 Tools)
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+
295
+ ### 1. Core Onboarding & Diagnostics (`brain/project_readiness.py`)
296
+ - `assess_project_readiness(path=".")`: Scan directory and calculate structural onboarding readiness score (0-100%) across PRD, tasks, git, and tests.
297
+ - `project_readiness_report(path=".")`: Generate formatted Markdown readiness report.
298
+ - `bootstrap_project(path=".")`: Initialize PRD templates, milestones, and brain structure.
299
+ - `adopt_existing_project(path=".")`: Scan existing legacy repository and draft PRD, context, and backlog.
300
+ - `doctor(path=".")`: Run diagnostic health audit across 7 layers.
301
+ - `reset_project_brain(path=".")`: Reset project metadata while preserving source code and git.
302
+ - `archive_project_brain(path=".")`: Backup project brain state into `.project_brain_archive/`.
303
+ - `create_project_workspace(name, template="blank", path=".")`: Create isolated sibling workspace directory.
304
+
305
+ ### 2. Session Orchestration (`brain/orchestrator.py`)
306
+ - `generate_project_brain(path=".")`: Consolidate current sprint metrics into a single dashboard.
307
+ - `next_best_action(path=".")`: Recommend the highest-priority unblocked task.
308
+ - `start_session(path=".")`: Begin a sprint and generate an AI task briefing.
309
+ - `end_session(session_summary, known_issues="", path=".")`: Conclude sprint and record handoff.
310
+ - `prepare_commit(session_summary, path=".")`: Suggest conventional commit message based on Git diff.
311
+ - `commit_changes(message, path=".")`: Stage workspace changes and commit cleanly.
312
+
313
+ ### 3. Task & Todo Engine (`brain/todo_engine.py`)
314
+ - `create_task(title, description, phase="", priority="medium", depends_on="", path=".")`: Add task.
315
+ - `update_task(task_id, status="", priority="", title="", path=".")`: Update task attributes.
316
+ - `complete_task(task_id, notes="", path=".")`: Close task with completion notes.
317
+ - `next_task(path=".")`: Get next ready task.
318
+ - `blocked_tasks(path=".")`: List tasks blocked by unfulfilled dependencies.
319
+ - `list_tasks(phase="", status="", priority="", path=".")`: Query tasks by phase, status, or priority.
320
+
321
+ ### 4. Phase & Milestone Management (`brain/phase_manager.py`)
322
+ - `get_current_phase(path=".")`: Retrieve active development phase.
323
+ - `set_phase(phase_name, description="", path=".")`: Set active scope phase.
324
+ - `complete_phase(notes="", path=".")`: Conclude current phase.
325
+ - `next_phase(phase_name, description="", path=".")`: Advance to next phase.
326
+ - `list_phases(path=".")`: List all defined phases.
327
+ - `add_milestone(name, target_date="", features="", path=".")`: Define project milestone.
328
+ - `list_milestones(path=".")`: Enumerate all milestones.
329
+
330
+ ### 5. PRD & Requirements Traceability (`brain/prd_manager.py`, `brain/requirements.py`)
331
+ - `get_prd(document="PRD", path=".")`: Read markdown PRD specification document.
332
+ - `update_prd(document, content, path=".")`: Update PRD specification document.
333
+ - `summarize_prd(path=".")`: Generate bullet-point requirements summary.
334
+ - `compare_work_to_prd(path=".")`: Audit backlog against PRD specifications.
335
+ - `extract_requirements(path=".")`: Extract structured requirements into `requirements.json`.
336
+ - `verify_requirements(feature_name="", path=".")`: Verify code implementation coverage against PRD section keywords (pair with `verify_work` for unit test coverage).
337
+ - `verify_outcome(task_id, path=".")`: Deep outcome audit verifying end-to-end user journeys.
338
+
339
+ ### 6. Workspace Sync & Verification (`brain/sync_engine.py`)
340
+ - `sync_workspace(path=".")`: Match Git branch names, commit logs, and modified files to tasks to compute heuristic completion confidence scores.
341
+ - `verify_work(task_id, path=".")`: Gather git diff, tests, and architecture rules to compile verification dossier.
342
+ - `project_dashboard(path=".")`: Unified manager dashboard combining Git, tasks, and code health.
343
+
344
+ ### 7. Sprint Handoffs (`brain/handoff_engine.py`)
345
+ - `generate_handoff(session_summary="", known_issues="", path=".")`: Save sprint handoff log.
346
+ - `get_last_handoff(path=".")`: Load latest session handoff.
347
+ - `list_handoffs(path=".")`: List historical handoffs with timestamps.
348
+
349
+ ### 8. Architecture & Dependency Control (`brain/guardian.py`, `brain/dependency.py`)
350
+ - `validate_architecture(path=".")`: Check code imports against forbidden and required technology rules.
351
+ - `build_dependency_graph(path=".")`: Build complete dependency graph with cached AST parser.
352
+ - `impact_analysis(file_path, path=".")`: Calculate blast radius and affected downstream files before refactoring.
353
+
354
+ ### 9. Context Management (`tools/context_mgmt.py`)
355
+ - `init_context(path=".")`: Initialize or auto-detect project context.
356
+ - `get_context(dot_path="", path=".")`: Query context field using dot notation.
357
+ - `update_context(dot_path, value, path=".")`: Set context field value.
358
+ - `add_to_context_list(dot_path, item, path=".")`: Append item to list field.
359
+ - `add_key_file(file_path, purpose, details="", root_path=".")`: Track critical codebase file.
360
+ - `add_task(task_id, description, status="pending", branch="", notes="", path=".")`: Add task record.
361
+ - `add_decision(decision, reason, alternatives="", path=".")`: Log Architecture Decision Record (ADR).
362
+ - `export_context_markdown(path=".")`: Export project context to `.project-context.md`.
363
+ - `remove_context_item(dot_path, index, path=".")`: Remove item from list by index.
364
+ - `reset_context(path=".")`: Reset context to defaults.
365
+ - `project_info(path=".")`: Inspect project file count, frameworks, and runtime metrics.
366
+
367
+ ### 10. High-Performance File Operations (`tools/file_ops.py`)
368
+ - `read_file(path, start_line=None, end_line=None, line_numbers=False)`: Read sandboxed files with slicing and safety limits.
369
+ - `write_file(path, content, append=False)`: Atomic file writes with directory auto-creation and append support.
370
+ - `edit_file(path, old_string, new_string, count=None)`: Surgical in-place editing with whitespace mismatch detection.
371
+ - `batch_replace(file_paths, old_string, new_string)`: Atomic multi-file text replacement.
372
+ - `file_info(path)`: Get file size, line count, permissions, and modification timestamp.
373
+ - `delete_path(path)`: Delete single file or empty folder.
374
+ - `delete_recursive(path)`: Recursively delete folder trees (blocked in `safe` mode).
375
+ - `list_directory(path)`: List directory entries with human-readable sizes and noise filtering.
376
+ - `glob_files(pattern, base_path=".")`: Find files with glob patterns and noise filtering.
377
+ - `create_directory(path)`: Recursively create directory paths (`mkdir -p`).
378
+
379
+ ### 11. Code Search & Terminal Execution (`tools/search.py`, `tools/terminal.py`)
380
+ - `search_code(pattern, path=".", glob_filter=None, max_results=50, context_lines=0)`: High-speed search using Ripgrep (`rg`) with regex fallback.
381
+ - `run_command(command, timeout_seconds=60, workdir=None)`: Execute shell command inside sandbox with safety filtering.
382
+
383
+ ### 12. Git Operations & Automation (`tools/git_ops.py`)
384
+ - `git_status(repo_path=".")`: Get working tree status.
385
+ - `git_diff(repo_path=".", staged=False)`: View staged or unstaged diffs.
386
+ - `git_log(repo_path=".", max_count=10)`: Inspect commit history.
387
+ - `git_branch(repo_path=".")`: List local branches.
388
+ - `git_add(repo_path=".", files=".")`: Stage files for commit.
389
+ - `git_commit(repo_path=".", message="update")`: Commit staged files.
390
+ - `git_create_branch(repo_path=".", branch_name="")`: Create and checkout branch.
391
+ - `install_git_hooks(repo_path=".")`: Install Git pre-commit hook to automatically sync `.project_brain`.
392
+
393
+ ### 13. Desktop GUI Automation & Inspection (`tools/desktop_ops.py` โ€” 16 Tools)
394
+ - `desktop_status()`: Inspect `agent-desktop` CLI installation and AT-SPI accessibility bus.
395
+ - `desktop_list_apps()`: List active desktop processes and window titles.
396
+ - `desktop_list_windows(app="")`: List desktop window IDs and geometry bounds.
397
+ - `desktop_snapshot(app="", interactive_only=True, compact=True)`: Capture accessibility tree structure with `@ref_id`s.
398
+ - `desktop_find(name="", role="", app="")`: Locate UI elements (buttons, inputs, menus) by text or role.
399
+ - `desktop_click(ref_id, headed=False)`: Trigger semantic or physical mouse click on target element.
400
+ - `desktop_type(ref_id, text, headed=False)`: Send native keyboard text into target field.
401
+ - `desktop_press(key_combo, headed=False)`: Send key shortcut combos (e.g. `ctrl+c`, `return`, `escape`, `alt+tab`).
402
+ - `desktop_scroll(ref_id="", direction="down", amount=3, headed=False)`: Scroll element or window viewport.
403
+ - `desktop_launch(app, activate=True)`: Launch desktop application and await window presentation.
404
+ - `desktop_close_app(app, force=False)`: Gracefully close or force terminate an application.
405
+ - `desktop_focus_window(app="", window_id="")`: Bring target window to foreground and verify OS focus.
406
+ - `desktop_clipboard(action="get|set|clear", text="")`: Read, write, or clear system clipboard.
407
+ - `desktop_verify_element(name, role="", app="", expected_state="")`: Verify that expected GUI component exists and assert state.
408
+ - `desktop_screenshot(app, output_path="screenshot.png")`: Capture PNG screenshot of application window.
409
+ - `desktop_action(command, args=None, timeout=30)`: Universal dispatcher executing ANY of the 50+ `agent-desktop` commands (`is`, `get`, `hover`, `drag`, `wait`, `batch`, `session`, etc.).
410
+
411
+ ### 14. Server Profiling (`server.py`)
412
+ - `get_dev_mcp_profile()`: Inspect active profile mode, loaded modules, and tool counts.
413
+
414
+ ---
415
+
416
+ ## ๐Ÿ”’ Security Sandbox & Safety Modes
417
+
418
+ All file and process operations are governed by `security.py`:
419
+ - **`safe` (Default)**: Workspace Lock active. Commands jailed to active project root. Recursive deletions and destructive commands (`sudo`, `mkfs`, `rm -rf`, `git reset --hard`) are blocked.
420
+ - **`trusted`**: Workspace Lock active. Folder deletions and checkout operations permitted within project bounds.
421
+ - **`lab`**: Workspace Lock disabled. Allows operations across allowed directories list (`DEV_MCP_ALLOWED_DIRS`).
422
+
423
+ For security specifications, see **[docs/security.md](docs/security.md)**.
424
+
425
+ ---
426
+
427
+ ## ๐Ÿ“š In-Depth Documentation
428
+
429
+ - **[User Manual & Developer Guide](docs/user_manual.md)**: Complete guide to all 91 tools with parameter signatures and examples.
430
+ - **[v2.2.0 Release Notes](docs/release-notes-v2.2.0.md)**: Local distribution, PyPI packaging, and MCP Registry metadata.
431
+ - **[v2.1.0 Release Notes](docs/release-notes-v2.1.0.md)**: Performance benchmarks and upgrade guides.
432
+ - **[Architecture Specification](docs/architecture-v2.md)**: Architecture, data structures, and multi-agent isolation.
433
+ - **[Security Model](docs/security.md)**: Workspace Lock, safety modes, and command authorization.
434
+ - **[Multi-Workspace Guide](docs/workspaces.md)**: Managing sibling workspaces and subagent isolation.
435
+ - **[Antigravity CLI Integration](docs/antigravity.md)**: DeepMind Antigravity CLI workflows.
436
+ - **[Open Design Integration](docs/open-design.md)**: Design-to-code metadata synchronization.
437
+
438
+ ---
439
+
440
+ ## ๐Ÿงช Testing & Validation
441
+
442
+ ```bash
443
+ # Run unit and optimization test suites
444
+ .venv/bin/python -m unittest discover -s tests -p "*.py" -v
445
+
446
+ # Run the end-to-end MCP workflow verification
447
+ .venv/bin/python tests/validate_mcp_flow.py
448
+
449
+ # Verify optimization benchmarks
450
+ .venv/bin/python tests/test_optimizations.py
451
+ ```