brainrender 2.1.17__tar.gz → 2.1.19__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (41) hide show
  1. {brainrender-2.1.17 → brainrender-2.1.19}/PKG-INFO +7 -3
  2. {brainrender-2.1.17 → brainrender-2.1.19}/README.md +3 -0
  3. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender/__init__.py +2 -6
  4. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender/actor.py +1 -1
  5. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender/atlas.py +1 -1
  6. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender/settings.py +1 -0
  7. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender.egg-info/PKG-INFO +7 -3
  8. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender.egg-info/requires.txt +1 -1
  9. {brainrender-2.1.17 → brainrender-2.1.19}/pyproject.toml +1 -1
  10. {brainrender-2.1.17 → brainrender-2.1.19}/.github/workflows/test_and_deploy.yml +0 -0
  11. {brainrender-2.1.17 → brainrender-2.1.19}/.gitignore +0 -0
  12. {brainrender-2.1.17 → brainrender-2.1.19}/CITATION.cff +0 -0
  13. {brainrender-2.1.17 → brainrender-2.1.19}/LICENSE +0 -0
  14. {brainrender-2.1.17 → brainrender-2.1.19}/MANIFEST.in +0 -0
  15. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender/_colors.py +0 -0
  16. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender/_io.py +0 -0
  17. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender/_jupyter.py +0 -0
  18. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender/_utils.py +0 -0
  19. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender/_video.py +0 -0
  20. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender/actors/__init__.py +0 -0
  21. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender/actors/cylinder.py +0 -0
  22. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender/actors/line.py +0 -0
  23. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender/actors/neurons.py +0 -0
  24. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender/actors/points.py +0 -0
  25. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender/actors/ruler.py +0 -0
  26. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender/actors/streamlines.py +0 -0
  27. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender/actors/volume.py +0 -0
  28. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender/atlas_specific/__init__.py +0 -0
  29. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender/atlas_specific/allen_brain_atlas/gene_expression/__init__.py +0 -0
  30. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender/atlas_specific/allen_brain_atlas/gene_expression/api.py +0 -0
  31. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender/atlas_specific/allen_brain_atlas/gene_expression/ge_utils.py +0 -0
  32. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender/atlas_specific/allen_brain_atlas/streamlines.py +0 -0
  33. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender/camera.py +0 -0
  34. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender/cameras.py +0 -0
  35. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender/render.py +0 -0
  36. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender/scene.py +0 -0
  37. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender/video.py +0 -0
  38. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender.egg-info/SOURCES.txt +0 -0
  39. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender.egg-info/dependency_links.txt +0 -0
  40. {brainrender-2.1.17 → brainrender-2.1.19}/brainrender.egg-info/top_level.txt +0 -0
  41. {brainrender-2.1.17 → brainrender-2.1.19}/setup.cfg +0 -0
{brainrender-2.1.17 → brainrender-2.1.19}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
- Metadata-Version: 2.2
1
+ Metadata-Version: 2.4
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  Name: brainrender
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- Version: 2.1.17
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+ Version: 2.1.19
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  Summary: Visualisation and exploration of brain atlases and other anatomical data
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  Author-email: "Federico Claudi, Adam Tyson, Luigi Petrucco" <hello@brainglobe.info>
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  License: BSD-3-Clause
@@ -25,7 +25,7 @@ License-File: LICENSE
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  Requires-Dist: brainglobe-atlasapi>=2.0.1
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  Requires-Dist: brainglobe-space>=1.0.0
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  Requires-Dist: brainglobe-utils>=0.5.0
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- Requires-Dist: h5py
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+ Requires-Dist: h5py<3.16.0
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  Requires-Dist: k3d
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  Requires-Dist: loguru
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  Requires-Dist: morphapi>=0.2.1
@@ -53,6 +53,7 @@ Requires-Dist: setuptools_scm; extra == "dev"
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  Provides-Extra: nb
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  Requires-Dist: jupyter; extra == "nb"
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  Requires-Dist: k3d; extra == "nb"
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+ Dynamic: license-file
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  # brainrender
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@@ -63,6 +64,9 @@ Requires-Dist: k3d; extra == "nb"
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  [![tests](https://github.com/brainglobe/brainrender/workflows/tests/badge.svg)](https://github.com/brainglobe/brainrender/actions)
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  [![codecov](https://codecov.io/gh/brainglobe/brainrender/graph/badge.svg)](https://codecov.io/gh/brainglobe/brainrender)
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  [![Downloads](https://static.pepy.tech/badge/brainrender)](https://pepy.tech/project/brainrender)
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+ [![image.sc forum](https://img.shields.io/badge/dynamic/json.svg?label=forum&url=https%3A%2F%2Fforum.image.sc%2Ftags%2Fbrainglobe.json&query=%24.topic_list.tags.0.topic_count&colorB=brightgreen&suffix=%20topics&logo=data:image/png;base64,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)](https://forum.image.sc/tag/brainglobe)
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+ [![Bluesky](https://img.shields.io/badge/Bluesky-0285FF?logo=bluesky&logoColor=fff)](https://bsky.app/profile/brainglobe.info)
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+ [![Mastodon](https://img.shields.io/badge/Mastodon-6364FF?logo=mastodon&logoColor=fff)](https://mastodon.online/@brainglobe)
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  &nbsp;
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  &nbsp;
{brainrender-2.1.17 → brainrender-2.1.19}/README.md RENAMED
@@ -7,6 +7,9 @@
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  [![tests](https://github.com/brainglobe/brainrender/workflows/tests/badge.svg)](https://github.com/brainglobe/brainrender/actions)
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  [![codecov](https://codecov.io/gh/brainglobe/brainrender/graph/badge.svg)](https://codecov.io/gh/brainglobe/brainrender)
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  [![Downloads](https://static.pepy.tech/badge/brainrender)](https://pepy.tech/project/brainrender)
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+ [![image.sc forum](https://img.shields.io/badge/dynamic/json.svg?label=forum&url=https%3A%2F%2Fforum.image.sc%2Ftags%2Fbrainglobe.json&query=%24.topic_list.tags.0.topic_count&colorB=brightgreen&suffix=%20topics&logo=data:image/png;base64,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)](https://forum.image.sc/tag/brainglobe)
11
+ [![Bluesky](https://img.shields.io/badge/Bluesky-0285FF?logo=bluesky&logoColor=fff)](https://bsky.app/profile/brainglobe.info)
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+ [![Mastodon](https://img.shields.io/badge/Mastodon-6364FF?logo=mastodon&logoColor=fff)](https://mastodon.online/@brainglobe)
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  &nbsp;
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  &nbsp;
{brainrender-2.1.17 → brainrender-2.1.19}/brainrender/__init__.py RENAMED
@@ -1,4 +1,3 @@
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- import os
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  from loguru import logger
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  from pathlib import Path
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  from rich.logging import RichHandler
@@ -17,7 +16,6 @@ import brainrender.actors
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  from brainrender.video import VideoMaker, Animation
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  from brainrender.atlas import Atlas
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-
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  try:
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  __version__ = version("brainrender")
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  except PackageNotFoundError:
@@ -37,10 +35,8 @@ def set_logging(level="INFO", path=None):
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  """
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  logger.remove()
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- path = path or str(base_dir / "log.log")
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- if Path(path).exists():
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- Path(path).unlink()
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- logger.add(path, level="DEBUG")
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+ path = path or str(base_dir / "brainrender_{time}.log")
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+ logger.add(path, retention=settings.NUM_LOGS_KEPT, level="DEBUG")
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  if level == "DEBUG":
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  logger.configure(
{brainrender-2.1.17 → brainrender-2.1.19}/brainrender/actor.py RENAMED
@@ -97,7 +97,7 @@ class Actor:
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  alpha=None,
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  ):
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  """
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- Actor class representing anythng shown in a brainrender scene.
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+ Actor class representing anything shown in a brainrender scene.
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  Methods in brainrender.actors are used to creates actors specific
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  for different data types.
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{brainrender-2.1.17 → brainrender-2.1.19}/brainrender/atlas.py RENAMED
@@ -145,7 +145,7 @@ class Atlas(BrainGlobeAtlas):
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  [bounds[4], bounds[5]],
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  ]
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- wh = [float(np.diff(root_bounds[i])) for i in idx_pair]
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+ wh = [float(np.diff(root_bounds[i])[0]) for i in idx_pair]
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  if sx is None:
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  sx = wh[0]
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  if sy is None:
{brainrender-2.1.17 → brainrender-2.1.19}/brainrender/settings.py RENAMED
@@ -36,3 +36,4 @@ SHADER_STYLE = "cartoon" # affects the look of rendered brain regions: [metalli
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  SHOW_AXES = True
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  WHOLE_SCREEN = False # If true render window is full screen
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  OFFSCREEN = False
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+ NUM_LOGS_KEPT = 100
{brainrender-2.1.17 → brainrender-2.1.19}/brainrender.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
- Metadata-Version: 2.2
1
+ Metadata-Version: 2.4
2
2
  Name: brainrender
3
- Version: 2.1.17
3
+ Version: 2.1.19
4
4
  Summary: Visualisation and exploration of brain atlases and other anatomical data
5
5
  Author-email: "Federico Claudi, Adam Tyson, Luigi Petrucco" <hello@brainglobe.info>
6
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  License: BSD-3-Clause
@@ -25,7 +25,7 @@ License-File: LICENSE
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  Requires-Dist: brainglobe-atlasapi>=2.0.1
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  Requires-Dist: brainglobe-space>=1.0.0
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  Requires-Dist: brainglobe-utils>=0.5.0
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- Requires-Dist: h5py
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+ Requires-Dist: h5py<3.16.0
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  Requires-Dist: k3d
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  Requires-Dist: loguru
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  Requires-Dist: morphapi>=0.2.1
@@ -53,6 +53,7 @@ Requires-Dist: setuptools_scm; extra == "dev"
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  Provides-Extra: nb
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  Requires-Dist: jupyter; extra == "nb"
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  Requires-Dist: k3d; extra == "nb"
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+ Dynamic: license-file
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  # brainrender
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@@ -63,6 +64,9 @@ Requires-Dist: k3d; extra == "nb"
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  [![tests](https://github.com/brainglobe/brainrender/workflows/tests/badge.svg)](https://github.com/brainglobe/brainrender/actions)
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  [![codecov](https://codecov.io/gh/brainglobe/brainrender/graph/badge.svg)](https://codecov.io/gh/brainglobe/brainrender)
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  [![Downloads](https://static.pepy.tech/badge/brainrender)](https://pepy.tech/project/brainrender)
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+ [![image.sc forum](https://img.shields.io/badge/dynamic/json.svg?label=forum&url=https%3A%2F%2Fforum.image.sc%2Ftags%2Fbrainglobe.json&query=%24.topic_list.tags.0.topic_count&colorB=brightgreen&suffix=%20topics&logo=data:image/png;base64,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)](https://forum.image.sc/tag/brainglobe)
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+ [![Bluesky](https://img.shields.io/badge/Bluesky-0285FF?logo=bluesky&logoColor=fff)](https://bsky.app/profile/brainglobe.info)
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+ [![Mastodon](https://img.shields.io/badge/Mastodon-6364FF?logo=mastodon&logoColor=fff)](https://mastodon.online/@brainglobe)
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  &nbsp;
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  &nbsp;
{brainrender-2.1.17 → brainrender-2.1.19}/brainrender.egg-info/requires.txt RENAMED
@@ -1,7 +1,7 @@
1
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  brainglobe-atlasapi>=2.0.1
2
2
  brainglobe-space>=1.0.0
3
3
  brainglobe-utils>=0.5.0
4
- h5py
4
+ h5py<3.16.0
5
5
  k3d
6
6
  loguru
7
7
  morphapi>=0.2.1
{brainrender-2.1.17 → brainrender-2.1.19}/pyproject.toml RENAMED
@@ -12,7 +12,7 @@ dependencies = [
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  "brainglobe-atlasapi>=2.0.1",
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  "brainglobe-space>=1.0.0",
14
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  "brainglobe-utils>=0.5.0",
15
- "h5py",
15
+ "h5py<3.16.0",
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  "k3d",
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  "loguru",
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  "morphapi>=0.2.1",
{brainrender-2.1.17 → brainrender-2.1.19}/.gitignore RENAMED
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{brainrender-2.1.17 → brainrender-2.1.19}/CITATION.cff RENAMED
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{brainrender-2.1.17 → brainrender-2.1.19}/LICENSE RENAMED
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{brainrender-2.1.17 → brainrender-2.1.19}/MANIFEST.in RENAMED
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{brainrender-2.1.17 → brainrender-2.1.19}/setup.cfg RENAMED
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