brainles-preprocessing 0.6.11__tar.gz → 0.6.12__tar.gz

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  1. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/PKG-INFO +1 -1
  2. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/cli.py +5 -2
  3. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/pyproject.toml +1 -1
  4. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/LICENSE +0 -0
  5. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/README.md +0 -0
  6. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/__init__.py +0 -0
  7. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/brain_extraction/__init__.py +0 -0
  8. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/brain_extraction/brain_extractor.py +0 -0
  9. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/brain_extraction/hd_bet.py +0 -0
  10. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/brain_extraction/synthstrip.py +0 -0
  11. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/brats/__init__.py +0 -0
  12. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/brats/t1_centric.py +0 -0
  13. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/brats/t1c_centric.py +0 -0
  14. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/constants.py +0 -0
  15. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/defacing/__init__.py +0 -0
  16. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/defacing/defacer.py +0 -0
  17. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/defacing/quickshear/__init__.py +0 -0
  18. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/defacing/quickshear/nipy_quickshear.py +0 -0
  19. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/defacing/quickshear/quickshear.py +0 -0
  20. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/modality.py +0 -0
  21. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/n4_bias_correction/__init__.py +0 -0
  22. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/n4_bias_correction/n4_bias_corrector.py +0 -0
  23. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/n4_bias_correction/sitk/__init__.py +0 -0
  24. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/n4_bias_correction/sitk/sitk_n4_bias_corrector.py +0 -0
  25. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/normalization/__init__.py +0 -0
  26. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/normalization/normalizer_base.py +0 -0
  27. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/normalization/percentile_normalizer.py +0 -0
  28. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/normalization/windowing_normalizer.py +0 -0
  29. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/preprocessor/__init__.py +0 -0
  30. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/preprocessor/atlas_centric_preprocessor.py +0 -0
  31. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/preprocessor/native_space_preprocessor.py +0 -0
  32. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/preprocessor/preprocessor.py +0 -0
  33. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/ANTs/ANTs.py +0 -0
  34. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/ANTs/TODO_ANTs_parameters.py +0 -0
  35. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/ANTs/__init__.py +0 -0
  36. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/__init__.py +0 -0
  37. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/elastix/__init__.py +0 -0
  38. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/elastix/elastix.py +0 -0
  39. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/greedy/__init__.py +0 -0
  40. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/greedy/greedy.py +0 -0
  41. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/__init__.py +0 -0
  42. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg.py +0 -0
  43. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/bin/groupwise_niftyreg_params.sh +0 -0
  44. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/bin/groupwise_niftyreg_run.sh +0 -0
  45. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/bin/reg_aladin +0 -0
  46. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/bin/reg_average +0 -0
  47. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/bin/reg_f3d +0 -0
  48. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/bin/reg_jacobian +0 -0
  49. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/bin/reg_measure +0 -0
  50. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/bin/reg_resample +0 -0
  51. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/bin/reg_tools +0 -0
  52. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/bin/reg_transform +0 -0
  53. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/AffineDeformationFieldKernel.h +0 -0
  54. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/AladinContent.h +0 -0
  55. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/BlockMatchingKernel.h +0 -0
  56. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/CPUAffineDeformationFieldKernel.h +0 -0
  57. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/CPUBlockMatchingKernel.h +0 -0
  58. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/CPUConvolutionKernel.h +0 -0
  59. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/CPUKernelFactory.h +0 -0
  60. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/CPUOptimiseKernel.h +0 -0
  61. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/CPUResampleImageKernel.h +0 -0
  62. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/ConvolutionKernel.h +0 -0
  63. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/Kernel.h +0 -0
  64. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/KernelFactory.h +0 -0
  65. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/OptimiseKernel.h +0 -0
  66. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/Platform.h +0 -0
  67. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/ResampleImageKernel.h +0 -0
  68. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_ReadWriteImage.h +0 -0
  69. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_ReadWriteMatrix.h +0 -0
  70. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_aladin.cpp +0 -0
  71. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_aladin.h +0 -0
  72. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_aladin_sym.cpp +0 -0
  73. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_aladin_sym.h +0 -0
  74. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_base.h +0 -0
  75. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_blockMatching.h +0 -0
  76. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_dti.h +0 -0
  77. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_f3d.h +0 -0
  78. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_f3d2.h +0 -0
  79. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_f3d_sym.h +0 -0
  80. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_femTrans.h +0 -0
  81. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_globalTrans.h +0 -0
  82. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_kld.h +0 -0
  83. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_lncc.h +0 -0
  84. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_localTrans.h +0 -0
  85. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_localTrans_jac.h +0 -0
  86. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_localTrans_regul.h +0 -0
  87. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_macros.h +0 -0
  88. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_maths.h +0 -0
  89. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_maths_eigen.h +0 -0
  90. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_measure.h +0 -0
  91. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_mind.h +0 -0
  92. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_nmi.h +0 -0
  93. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_optimiser.cpp +0 -0
  94. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_optimiser.h +0 -0
  95. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_resampling.h +0 -0
  96. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_splineBasis.h +0 -0
  97. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_ssd.h +0 -0
  98. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_stringFormat.h +0 -0
  99. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/_reg_tools.h +0 -0
  100. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/nifti1.h +0 -0
  101. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/nifti1_io.h +0 -0
  102. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/png.h +0 -0
  103. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/pngconf.h +0 -0
  104. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/pngdebug.h +0 -0
  105. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/pnginfo.h +0 -0
  106. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/pnglibconf.h +0 -0
  107. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/pngpriv.h +0 -0
  108. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/pngstruct.h +0 -0
  109. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/readpng.h +0 -0
  110. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/reg_png.h +0 -0
  111. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/zlib.h +0 -0
  112. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/znzlib.h +0 -0
  113. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/niftyreg_1.5.68/include/zutil.h +0 -0
  114. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/reg_aladin +0 -0
  115. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/reg_resample +0 -0
  116. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/rigid_reg.sh +0 -0
  117. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/niftyreg/niftyreg_scripts/transform.sh +0 -0
  118. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/registration/registrator.py +0 -0
  119. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/transform.py +0 -0
  120. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/utils/__init__.py +0 -0
  121. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/utils/citation_reminder.py +0 -0
  122. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/utils/generic.py +0 -0
  123. {brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/utils/zenodo.py +0 -0
{brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: brainles_preprocessing
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- Version: 0.6.11
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+ Version: 0.6.12
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  Summary: Tool for preprocessing tasks in biomedical imaging, with a focus on (but not limited to) multi-modal brain MRI
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  License: Apache-2.0
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  License-File: LICENSE
{brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/brainles_preprocessing/cli.py RENAMED
@@ -59,11 +59,15 @@ def main(
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  ),
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  ],
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  output_dir: Annotated[
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- str | Path,
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+ Path,
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  typer.Option(
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  "-o",
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  "--output_dir",
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  help="The path to the output directory",
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+ exists=False,
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+ file_okay=False,
69
+ dir_okay=True,
70
+ resolve_path=True,
67
71
  ),
68
72
  ],
69
73
  input_atlas: Annotated[
@@ -89,7 +93,6 @@ def main(
89
93
  Preprocess the input images according to the BraTS protocol.
90
94
  """
91
95
 
92
- output_dir = Path(output_dir)
93
96
  output_dir.mkdir(parents=True, exist_ok=True)
94
97
 
95
98
  # specify a normalizer
{brainles_preprocessing-0.6.11 → brainles_preprocessing-0.6.12}/pyproject.toml RENAMED
@@ -14,7 +14,7 @@ exclude = [
14
14
  ]
15
15
 
16
16
  name = "brainles_preprocessing"
17
- version = "0.6.11" # will be overwritten by poetry-dynamic-versioning but needs to be set
17
+ version = "0.6.12" # will be overwritten by poetry-dynamic-versioning but needs to be set
18
18
  description = "Tool for preprocessing tasks in biomedical imaging, with a focus on (but not limited to) multi-modal brain MRI"
19
19
  license = "Apache-2.0"
20
20