brainlayer 1.0.0__tar.gz → 1.2.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (874) hide show
  1. brainlayer-1.2.0/.claude-plugin/marketplace.json +13 -0
  2. brainlayer-1.2.0/.claude.local.md.example +21 -0
  3. brainlayer-1.2.0/.gitattributes +2 -0
  4. brainlayer-1.2.0/.githooks/pre-push +38 -0
  5. brainlayer-1.2.0/.github/workflows/ci.yml +113 -0
  6. brainlayer-1.2.0/.gitignore +84 -0
  7. brainlayer-1.2.0/.mcp.json.example +19 -0
  8. brainlayer-1.2.0/AGENTS.md +43 -0
  9. brainlayer-1.2.0/BUGBOT_ACTION_ITEMS.md +377 -0
  10. brainlayer-1.2.0/BUGBOT_CRITICAL_ISSUES.md +226 -0
  11. brainlayer-1.2.0/BUGBOT_FINAL_STATUS.md +155 -0
  12. brainlayer-1.2.0/BUGBOT_PR_COMMENT_HELPER_FAST_PROFILE.md +161 -0
  13. brainlayer-1.2.0/BUGBOT_REREVIEW_P2_KG_CLEANUP.md +478 -0
  14. brainlayer-1.2.0/BUGBOT_REVIEW.md +477 -0
  15. brainlayer-1.2.0/BUGBOT_REVIEW_352.md +256 -0
  16. brainlayer-1.2.0/BUGBOT_REVIEW_BRAINBAR_HELPER_FAST_PROFILE.md +596 -0
  17. brainlayer-1.2.0/BUGBOT_REVIEW_DEFLAKE_AGENT_PROFILES.md +194 -0
  18. brainlayer-1.2.0/BUGBOT_REVIEW_FINDINGS.md +191 -0
  19. brainlayer-1.2.0/BUGBOT_REVIEW_FIX_PYTHON_CI.md +279 -0
  20. brainlayer-1.2.0/BUGBOT_REVIEW_FTS_RECALL.md +273 -0
  21. brainlayer-1.2.0/BUGBOT_REVIEW_HOOKS_FAIL_LOUD.md +240 -0
  22. brainlayer-1.2.0/BUGBOT_REVIEW_P2_KG_CLEANUP.md +274 -0
  23. brainlayer-1.2.0/BUGBOT_REVIEW_P6B.md +243 -0
  24. brainlayer-1.2.0/BUGBOT_REVIEW_QUICK_CAPTURE.md +271 -0
  25. brainlayer-1.2.0/BUGBOT_REVIEW_QUICK_CAPTURE_UX_FIX.md +442 -0
  26. brainlayer-1.2.0/BUGBOT_REVIEW_RESTORE_CAPTURE_ACTIONS.md +797 -0
  27. brainlayer-1.2.0/BUGBOT_REVIEW_SUMMARY.md +146 -0
  28. brainlayer-1.2.0/BUGBOT_SUMMARY.md +76 -0
  29. brainlayer-1.2.0/BUGBOT_SUMMARY_HELPER_FAST_PROFILE.md +233 -0
  30. brainlayer-1.2.0/CHANGELOG.md +57 -0
  31. brainlayer-1.2.0/CLAUDE.md +142 -0
  32. brainlayer-1.2.0/CODEOWNERS +1 -0
  33. {brainlayer-1.0.0 → brainlayer-1.2.0}/CONTRIBUTING.md +18 -2
  34. brainlayer-1.2.0/PKG-INFO +389 -0
  35. brainlayer-1.2.0/README.md +318 -0
  36. brainlayer-1.2.0/SLICE-B-BRIEF.md +29 -0
  37. brainlayer-1.2.0/artifacts/flex-hybrid-taxonomy-2026-06-16/flex-after-productionprompt-hybrid-taxonomy-combined.jsonl +50 -0
  38. brainlayer-1.2.0/artifacts/flex-hybrid-taxonomy-2026-06-16/flex-after-productionprompt-hybrid-taxonomy-retry1.jsonl +5 -0
  39. brainlayer-1.2.0/artifacts/flex-hybrid-taxonomy-2026-06-16/flex-after-productionprompt-hybrid-taxonomy.jsonl +50 -0
  40. brainlayer-1.2.0/artifacts/flex-hybrid-taxonomy-2026-06-16/flex-before-oldprompt-validation-off.jsonl +50 -0
  41. brainlayer-1.2.0/artifacts/flex-hybrid-taxonomy-2026-06-16/judge-after-hybrid-vs-before-gemini-flash-combined-summary.json +118 -0
  42. brainlayer-1.2.0/artifacts/flex-hybrid-taxonomy-2026-06-16/judge-after-hybrid-vs-before-gemini-flash-combined.jsonl +50 -0
  43. brainlayer-1.2.0/artifacts/flex-hybrid-taxonomy-2026-06-16/judge-after-hybrid-vs-before-gemini-flash-retry1-summary.json +109 -0
  44. brainlayer-1.2.0/artifacts/flex-hybrid-taxonomy-2026-06-16/judge-after-hybrid-vs-before-gemini-flash-retry1.jsonl +1 -0
  45. brainlayer-1.2.0/artifacts/flex-hybrid-taxonomy-2026-06-16/judge-after-hybrid-vs-before-gemini-flash-summary.json +109 -0
  46. brainlayer-1.2.0/artifacts/flex-hybrid-taxonomy-2026-06-16/judge-after-hybrid-vs-before-gemini-flash.jsonl +50 -0
  47. brainlayer-1.2.0/artifacts/flex-hybrid-taxonomy-2026-06-16/recommended-36k-batch-backfill-plan.md +70 -0
  48. brainlayer-1.2.0/artifacts/flex-hybrid-taxonomy-2026-06-16/selection-after-retry1.jsonl +5 -0
  49. brainlayer-1.2.0/artifacts/flex-hybrid-taxonomy-2026-06-16/selection-cloudsafe-pilot50.jsonl +50 -0
  50. brainlayer-1.2.0/artifacts/flex-hybrid-taxonomy-2026-06-16/selection-judge-retry1.jsonl +1 -0
  51. brainlayer-1.2.0/brain-bar/.gitignore +4 -0
  52. brainlayer-1.2.0/brain-bar/Package.resolved +15 -0
  53. brainlayer-1.2.0/brain-bar/Package.swift +60 -0
  54. brainlayer-1.2.0/brain-bar/Scripts/brainbar_stdio_adapter.py +94 -0
  55. brainlayer-1.2.0/brain-bar/Sources/BrainBar/BrainBarApp.swift +299 -0
  56. brainlayer-1.2.0/brain-bar/Sources/BrainBar/BrainBarAppSupport.swift +206 -0
  57. brainlayer-1.2.0/brain-bar/Sources/BrainBar/BrainBarCommandBar.swift +491 -0
  58. brainlayer-1.2.0/brain-bar/Sources/BrainBar/BrainBarDashboardPanelController.swift +65 -0
  59. brainlayer-1.2.0/brain-bar/Sources/BrainBar/BrainBarInstanceLock.swift +66 -0
  60. brainlayer-1.2.0/brain-bar/Sources/BrainBar/BrainBarProcessControl.swift +33 -0
  61. brainlayer-1.2.0/brain-bar/Sources/BrainBar/BrainBarRuntime.swift +64 -0
  62. brainlayer-1.2.0/brain-bar/Sources/BrainBar/BrainBarServer.swift +1038 -0
  63. brainlayer-1.2.0/brain-bar/Sources/BrainBar/BrainBarSettingsActions.swift +9 -0
  64. brainlayer-1.2.0/brain-bar/Sources/BrainBar/BrainBarSettingsView.swift +399 -0
  65. brainlayer-1.2.0/brain-bar/Sources/BrainBar/BrainBarStatusPopoverController.swift +137 -0
  66. brainlayer-1.2.0/brain-bar/Sources/BrainBar/BrainBarURLAction.swift +20 -0
  67. brainlayer-1.2.0/brain-bar/Sources/BrainBar/BrainBarWindowRootView.swift +1508 -0
  68. brainlayer-1.2.0/brain-bar/Sources/BrainBar/BrainBarWindowState.swift +448 -0
  69. brainlayer-1.2.0/brain-bar/Sources/BrainBar/BrainBusClient.swift +170 -0
  70. brainlayer-1.2.0/brain-bar/Sources/BrainBar/BrainBusEvent.swift +203 -0
  71. brainlayer-1.2.0/brain-bar/Sources/BrainBar/BrainDatabase.swift +5271 -0
  72. brainlayer-1.2.0/brain-bar/Sources/BrainBar/BrainLayerConfig.swift +480 -0
  73. brainlayer-1.2.0/brain-bar/Sources/BrainBar/Dashboard/AgentActivityMonitor.swift +198 -0
  74. brainlayer-1.2.0/brain-bar/Sources/BrainBar/Dashboard/BrainBarLivePulse.swift +27 -0
  75. brainlayer-1.2.0/brain-bar/Sources/BrainBar/Dashboard/DaemonHealthMonitor.swift +82 -0
  76. brainlayer-1.2.0/brain-bar/Sources/BrainBar/Dashboard/DashboardMetricFormatter.swift +118 -0
  77. brainlayer-1.2.0/brain-bar/Sources/BrainBar/Dashboard/PipelineState.swift +574 -0
  78. brainlayer-1.2.0/brain-bar/Sources/BrainBar/Dashboard/SparklineRenderer.swift +405 -0
  79. brainlayer-1.2.0/brain-bar/Sources/BrainBar/Dashboard/StatsCollector.swift +500 -0
  80. brainlayer-1.2.0/brain-bar/Sources/BrainBar/Dashboard/StatusPopoverView.swift +620 -0
  81. brainlayer-1.2.0/brain-bar/Sources/BrainBar/DegradationState.swift +28 -0
  82. brainlayer-1.2.0/brain-bar/Sources/BrainBar/DesignTokens.swift +168 -0
  83. brainlayer-1.2.0/brain-bar/Sources/BrainBar/Formatters.swift +411 -0
  84. brainlayer-1.2.0/brain-bar/Sources/BrainBar/Formatting/TextFormatter.swift +280 -0
  85. brainlayer-1.2.0/brain-bar/Sources/BrainBar/HotkeyManager.swift +350 -0
  86. brainlayer-1.2.0/brain-bar/Sources/BrainBar/HotkeyRouteStatus.swift +25 -0
  87. brainlayer-1.2.0/brain-bar/Sources/BrainBar/HybridSearchHelperClient.swift +570 -0
  88. brainlayer-1.2.0/brain-bar/Sources/BrainBar/InjectionContinuation.swift +50 -0
  89. brainlayer-1.2.0/brain-bar/Sources/BrainBar/InjectionEvent.swift +370 -0
  90. brainlayer-1.2.0/brain-bar/Sources/BrainBar/InjectionFeedView.swift +940 -0
  91. brainlayer-1.2.0/brain-bar/Sources/BrainBar/InjectionPresentation.swift +467 -0
  92. brainlayer-1.2.0/brain-bar/Sources/BrainBar/InjectionStore.swift +308 -0
  93. brainlayer-1.2.0/brain-bar/Sources/BrainBar/InjectionSummaryView.swift +37 -0
  94. brainlayer-1.2.0/brain-bar/Sources/BrainBar/KnowledgeGraph/EntityCache.swift +105 -0
  95. brainlayer-1.2.0/brain-bar/Sources/BrainBar/KnowledgeGraph/KGAtlasLayout.swift +148 -0
  96. brainlayer-1.2.0/brain-bar/Sources/BrainBar/KnowledgeGraph/KGAtlasMode.swift +85 -0
  97. brainlayer-1.2.0/brain-bar/Sources/BrainBar/KnowledgeGraph/KGAtlasPresentation.swift +166 -0
  98. brainlayer-1.2.0/brain-bar/Sources/BrainBar/KnowledgeGraph/KGCanvasView.swift +494 -0
  99. brainlayer-1.2.0/brain-bar/Sources/BrainBar/KnowledgeGraph/KGEdge.swift +9 -0
  100. brainlayer-1.2.0/brain-bar/Sources/BrainBar/KnowledgeGraph/KGEdgeView.swift +37 -0
  101. brainlayer-1.2.0/brain-bar/Sources/BrainBar/KnowledgeGraph/KGNode.swift +55 -0
  102. brainlayer-1.2.0/brain-bar/Sources/BrainBar/KnowledgeGraph/KGNodeView.swift +51 -0
  103. brainlayer-1.2.0/brain-bar/Sources/BrainBar/KnowledgeGraph/KGRelationPresentation.swift +40 -0
  104. brainlayer-1.2.0/brain-bar/Sources/BrainBar/KnowledgeGraph/KGSidebarView.swift +556 -0
  105. brainlayer-1.2.0/brain-bar/Sources/BrainBar/KnowledgeGraph/KGSimulationController.swift +67 -0
  106. brainlayer-1.2.0/brain-bar/Sources/BrainBar/KnowledgeGraph/KGViewModel.swift +639 -0
  107. brainlayer-1.2.0/brain-bar/Sources/BrainBar/KnowledgeGraph/ScrollWheelZoomView.swift +35 -0
  108. brainlayer-1.2.0/brain-bar/Sources/BrainBar/MCPFraming.swift +165 -0
  109. brainlayer-1.2.0/brain-bar/Sources/BrainBar/MCPRouter.swift +1369 -0
  110. brainlayer-1.2.0/brain-bar/Sources/BrainBar/Models/DigestResult.swift +60 -0
  111. brainlayer-1.2.0/brain-bar/Sources/BrainBar/Models/EntityCard.swift +150 -0
  112. brainlayer-1.2.0/brain-bar/Sources/BrainBar/Models/KGSearchResult.swift +20 -0
  113. brainlayer-1.2.0/brain-bar/Sources/BrainBar/Models/KGTemporalDate.swift +50 -0
  114. brainlayer-1.2.0/brain-bar/Sources/BrainBar/Models/SearchResult.swift +161 -0
  115. brainlayer-1.2.0/brain-bar/Sources/BrainBar/Models/StatsResult.swift +19 -0
  116. brainlayer-1.2.0/brain-bar/Sources/BrainBar/QuickCaptureController.swift +134 -0
  117. brainlayer-1.2.0/brain-bar/Sources/BrainBar/QuickCapturePanel.swift +1178 -0
  118. brainlayer-1.2.0/brain-bar/Sources/BrainBar/QuickCapturePanelState.swift +37 -0
  119. brainlayer-1.2.0/brain-bar/Sources/BrainBar/SearchFilters.swift +36 -0
  120. brainlayer-1.2.0/brain-bar/Sources/BrainBar/SearchPanelController.swift +251 -0
  121. brainlayer-1.2.0/brain-bar/Sources/BrainBar/SearchProfileLogger.swift +65 -0
  122. brainlayer-1.2.0/brain-bar/Sources/BrainBar/SearchQueryActor.swift +57 -0
  123. brainlayer-1.2.0/brain-bar/Sources/BrainBar/SearchViewModel.swift +83 -0
  124. brainlayer-1.2.0/brain-bar/Sources/BrainBar/Views/Components/ChunkConversationSheet.swift +150 -0
  125. brainlayer-1.2.0/brain-bar/Sources/BrainBar/Views/Components/SearchResultCard.swift +98 -0
  126. brainlayer-1.2.0/brain-bar/Sources/BrainBar/Views/Components/SearchResultsList.swift +56 -0
  127. brainlayer-1.2.0/brain-bar/Sources/BrainBar/Views/Components/WrappingPillLayout.swift +96 -0
  128. brainlayer-1.2.0/brain-bar/Sources/BrainBar/Views/ExpirationPill.swift +31 -0
  129. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/BrainBarCommandBar.swift +1 -0
  130. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/BrainBarDaemonMain.swift +28 -0
  131. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/BrainBarDashboardPanelController.swift +1 -0
  132. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/BrainBarInstanceLock.swift +1 -0
  133. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/BrainBarProcessControl.swift +33 -0
  134. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/BrainBarRuntime.swift +1 -0
  135. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/BrainBarServer.swift +1 -0
  136. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/BrainBarSettingsActions.swift +1 -0
  137. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/BrainBarStatusPopoverController.swift +1 -0
  138. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/BrainBarURLAction.swift +1 -0
  139. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/BrainBarWindowRootView.swift +1 -0
  140. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/BrainBarWindowState.swift +1 -0
  141. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/BrainBusClient.swift +1 -0
  142. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/BrainBusEvent.swift +1 -0
  143. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/BrainDatabase.swift +1 -0
  144. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/Dashboard/AgentActivityMonitor.swift +1 -0
  145. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/Dashboard/BrainBarLivePulse.swift +1 -0
  146. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/Dashboard/DaemonHealthMonitor.swift +1 -0
  147. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/Dashboard/DashboardMetricFormatter.swift +1 -0
  148. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/Dashboard/PipelineState.swift +1 -0
  149. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/Dashboard/SparklineRenderer.swift +1 -0
  150. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/Dashboard/StatsCollector.swift +1 -0
  151. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/Dashboard/StatusPopoverView.swift +1 -0
  152. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/DegradationState.swift +1 -0
  153. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/DesignTokens.swift +1 -0
  154. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/Formatters.swift +1 -0
  155. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/Formatting/TextFormatter.swift +1 -0
  156. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/HotkeyManager.swift +1 -0
  157. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/HotkeyRouteStatus.swift +1 -0
  158. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/HybridSearchHelperClient.swift +1 -0
  159. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/InjectionContinuation.swift +1 -0
  160. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/InjectionEvent.swift +1 -0
  161. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/InjectionFeedView.swift +1 -0
  162. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/InjectionPresentation.swift +1 -0
  163. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/InjectionStore.swift +1 -0
  164. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/InjectionSummaryView.swift +1 -0
  165. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/KnowledgeGraph/EntityCache.swift +1 -0
  166. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/KnowledgeGraph/KGAtlasLayout.swift +1 -0
  167. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/KnowledgeGraph/KGAtlasMode.swift +1 -0
  168. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/KnowledgeGraph/KGAtlasPresentation.swift +1 -0
  169. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/KnowledgeGraph/KGCanvasView.swift +1 -0
  170. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/KnowledgeGraph/KGEdge.swift +1 -0
  171. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/KnowledgeGraph/KGEdgeView.swift +1 -0
  172. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/KnowledgeGraph/KGNode.swift +1 -0
  173. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/KnowledgeGraph/KGNodeView.swift +1 -0
  174. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/KnowledgeGraph/KGRelationPresentation.swift +1 -0
  175. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/KnowledgeGraph/KGSidebarView.swift +1 -0
  176. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/KnowledgeGraph/KGSimulationController.swift +1 -0
  177. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/KnowledgeGraph/KGViewModel.swift +1 -0
  178. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/KnowledgeGraph/ScrollWheelZoomView.swift +1 -0
  179. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/MCPFraming.swift +1 -0
  180. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/MCPRouter.swift +1 -0
  181. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/Models/DigestResult.swift +1 -0
  182. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/Models/EntityCard.swift +1 -0
  183. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/Models/KGSearchResult.swift +1 -0
  184. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/Models/KGTemporalDate.swift +1 -0
  185. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/Models/SearchResult.swift +1 -0
  186. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/Models/StatsResult.swift +1 -0
  187. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/QuickCaptureController.swift +1 -0
  188. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/QuickCapturePanel.swift +1 -0
  189. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/QuickCapturePanelState.swift +1 -0
  190. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/SearchFilters.swift +1 -0
  191. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/SearchPanelController.swift +1 -0
  192. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/SearchProfileLogger.swift +65 -0
  193. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/SearchQueryActor.swift +1 -0
  194. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/SearchViewModel.swift +1 -0
  195. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/Views/Components/ChunkConversationSheet.swift +1 -0
  196. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/Views/Components/SearchResultCard.swift +1 -0
  197. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/Views/Components/SearchResultsList.swift +1 -0
  198. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/Views/Components/WrappingPillLayout.swift +1 -0
  199. brainlayer-1.2.0/brain-bar/Sources/BrainBarDaemon/Views/ExpirationPill.swift +1 -0
  200. brainlayer-1.2.0/brain-bar/Sources/BrainBarLifecycle/BrainBarLifecycleWatchdog.swift +256 -0
  201. brainlayer-1.2.0/brain-bar/Sources/BrainBarLifecycle/BrainBarRestartHandoff.swift +50 -0
  202. brainlayer-1.2.0/brain-bar/Tests/BrainBarDaemonTests/BrainBarDaemonLaunchModeTests.swift +118 -0
  203. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/AgentActivityMonitorTests.swift +58 -0
  204. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/BrainBarDashboardPanelControllerTests.swift +101 -0
  205. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/BrainBarReliabilityTests.swift +377 -0
  206. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/BrainBarRuntimeWiringTests.swift +86 -0
  207. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/BrainBarSettingsSnapshotTests.swift +91 -0
  208. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/BrainBarSettingsViewModelTests.swift +49 -0
  209. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/BrainBarStartupRecoveryTests.swift +192 -0
  210. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/BrainBarStatusPopoverControllerTests.swift +77 -0
  211. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/BrainBarUXLogicTests.swift +425 -0
  212. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/BrainBarWindowStateTests.swift +389 -0
  213. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/BrainBusEventHubTests.swift +93 -0
  214. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/BrainLayerConfigTests.swift +131 -0
  215. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/ChunkConversationTests.swift +100 -0
  216. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/DashboardTests.swift +1597 -0
  217. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/DatabaseTests.swift +1886 -0
  218. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/DegradationStateTests.swift +336 -0
  219. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/DesignTokensTests.swift +75 -0
  220. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/FormattersTests.swift +374 -0
  221. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/HybridSearchHelperClientTests.swift +339 -0
  222. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/InjectionContinuationTests.swift +92 -0
  223. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/InjectionConversationSelectionTests.swift +26 -0
  224. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/InjectionEventTests.swift +322 -0
  225. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/InjectionPresentationTests.swift +574 -0
  226. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/InjectionStoreTests.swift +325 -0
  227. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/KGAtlasLayoutTests.swift +82 -0
  228. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/KGAtlasPresentationTests.swift +265 -0
  229. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/KGBadgeConsistencyTests.swift +42 -0
  230. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/KGExpirationRenderingTests.swift +144 -0
  231. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/KGSidebarSynopsisTests.swift +50 -0
  232. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/KnowledgeGraphTests.swift +1843 -0
  233. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/MCPFramingTests.swift +145 -0
  234. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/MCPRouterTests.swift +2366 -0
  235. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/PopoverTabTests.swift +214 -0
  236. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/QuickCaptureConversationTests.swift +60 -0
  237. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/QuickCapturePanelTests.swift +833 -0
  238. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/QuickCaptureTests.swift +415 -0
  239. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/RecordingHybridSearchClient.swift +68 -0
  240. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/SearchFiltersTests.swift +42 -0
  241. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/SearchPanelControllerTests.swift +38 -0
  242. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/SearchQueryActorTests.swift +121 -0
  243. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/SearchResultPresentationTests.swift +38 -0
  244. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/SearchViewModelTests.swift +130 -0
  245. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/SocketIntegrationTests.swift +1110 -0
  246. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/StabilityFixTests.swift +157 -0
  247. brainlayer-1.2.0/brain-bar/Tests/BrainBarTests/TextFormatterParityTests.swift +253 -0
  248. brainlayer-1.2.0/brain-bar/build-app.sh +679 -0
  249. brainlayer-1.2.0/brain-bar/bundle/Info.plist +37 -0
  250. brainlayer-1.2.0/brain-bar/bundle/com.brainlayer.brainbar-daemon.plist +24 -0
  251. brainlayer-1.2.0/brain-bar/bundle/com.brainlayer.brainbar.plist +38 -0
  252. brainlayer-1.2.0/brain-bar/karabiner/brainbar-f4.json +73 -0
  253. brainlayer-1.2.0/bugbot-review-notes.md +159 -0
  254. brainlayer-1.2.0/bugbot_pr_comment.md +76 -0
  255. brainlayer-1.2.0/contracts/engine-ui-contract.md +75 -0
  256. brainlayer-1.2.0/contracts/entity-types.yaml +162 -0
  257. brainlayer-1.2.0/docs/abcde-experiment-isolation.md +28 -0
  258. brainlayer-1.2.0/docs/adr/0000-template.md +29 -0
  259. brainlayer-1.2.0/docs/adr/0001-sqlite-vec-over-dedicated-vector-db.md +59 -0
  260. brainlayer-1.2.0/docs/adr/0002-reciprocal-rank-fusion-for-hybrid-search.md +68 -0
  261. brainlayer-1.2.0/docs/arbitration.md +19 -0
  262. brainlayer-1.2.0/docs/architecture/MODULE-MAP.md +47 -0
  263. {brainlayer-1.0.0 → brainlayer-1.2.0}/docs/architecture.md +5 -6
  264. brainlayer-1.2.0/docs/assets/logo.svg +75 -0
  265. brainlayer-1.2.0/docs/backup-strategy.md +132 -0
  266. brainlayer-1.2.0/docs/configuration.md +166 -0
  267. {brainlayer-1.0.0 → brainlayer-1.2.0}/docs/data-locations.md +3 -12
  268. brainlayer-1.2.0/docs/enrichment-provider-agnostic-design.md +52 -0
  269. {brainlayer-1.0.0 → brainlayer-1.2.0}/docs/enrichment-runbook.md +4 -6
  270. {brainlayer-1.0.0 → brainlayer-1.2.0}/docs/index.md +11 -8
  271. brainlayer-1.2.0/docs/kg-spec.md +58 -0
  272. brainlayer-1.2.0/docs/mcp-config.md +40 -0
  273. brainlayer-1.2.0/docs/mcp-tools.md +165 -0
  274. brainlayer-1.2.0/docs/orqi-batch-contract.md +73 -0
  275. brainlayer-1.2.0/docs/plans/2026-02-25-phase-3-brain-digest.md +51 -0
  276. brainlayer-1.2.0/docs/plans/2026-02-25-phase-6-sentiment.md +414 -0
  277. brainlayer-1.2.0/docs/plans/2026-03-30-enrichment-launchagent.md +85 -0
  278. brainlayer-1.2.0/docs/plans/2026-03-31-phase2-search-window-design.md +128 -0
  279. brainlayer-1.2.0/docs/plans/2026-03-31-phase2-search-window.md +221 -0
  280. brainlayer-1.2.0/docs/plans/2026-04-05-p1a-fts5-health.md +129 -0
  281. brainlayer-1.2.0/docs/plans/2026-04-05-p1b-eval-framework.md +135 -0
  282. brainlayer-1.2.0/docs/plans/2026-04-18-brainbar-dashboard-flow-collab.md +38 -0
  283. brainlayer-1.2.0/docs/plans/2026-04-18-brainbar-dashboard-flow.md +206 -0
  284. brainlayer-1.2.0/docs/plans/2026-04-18-brainbar-injections-graph-hybrid.md +132 -0
  285. brainlayer-1.2.0/docs/plans/2026-06-01-db-shrink-fts5-dedup.md +44 -0
  286. brainlayer-1.2.0/docs/plans/2026-06-02-phoenix-eval-integration.md +172 -0
  287. brainlayer-1.2.0/docs/plans/2026-06-14-reembed-unvectored-backlog.md +61 -0
  288. {brainlayer-1.0.0 → brainlayer-1.2.0}/docs/quickstart.md +25 -24
  289. {brainlayer-1.0.0 → brainlayer-1.2.0}/docs/research/launch-readiness-audit.md +2 -2
  290. {brainlayer-1.0.0 → brainlayer-1.2.0}/docs/research/session-enrichment/README.md +2 -2
  291. brainlayer-1.2.0/docs/research/session-enrichment/brainstore-write-tools.md +33 -0
  292. {brainlayer-1.0.0 → brainlayer-1.2.0}/docs/research/session-enrichment/prompts.md +3 -3
  293. brainlayer-1.2.0/docs/roadmap.md +32 -0
  294. brainlayer-1.2.0/docs/stylesheets/extra.css +299 -0
  295. brainlayer-1.2.0/eval_results/abcde_results_summary.md +13 -0
  296. brainlayer-1.2.0/eval_results/db-shrink-2026-06-01.json +116 -0
  297. brainlayer-1.2.0/eval_results/kg-phase1-dryrun-2026-06-05.json +2883 -0
  298. brainlayer-1.2.0/eval_results/kg-phase1-flag-batch-2026-06-05.json +21978 -0
  299. brainlayer-1.2.0/extensions/brainlayer-plugin/.claude-plugin/plugin.json +9 -0
  300. brainlayer-1.2.0/extensions/brainlayer-plugin/.gitignore +1 -0
  301. brainlayer-1.2.0/extensions/brainlayer-plugin/.mcp.json +11 -0
  302. brainlayer-1.2.0/extensions/brainlayer-plugin/hooks/hooks.json +53 -0
  303. brainlayer-1.2.0/extensions/brainlayer-plugin/hooks/session-start.sh +4 -0
  304. brainlayer-1.2.0/extensions/brainlayer-plugin/hooks/session-stop.sh +4 -0
  305. brainlayer-1.2.0/extensions/brainlayer-plugin/hooks/tool-error.sh +4 -0
  306. brainlayer-1.2.0/extensions/brainlayer-plugin/hooks/tool-observe.sh +4 -0
  307. brainlayer-1.2.0/extensions/brainlayer-plugin/scripts/brainbar-hook.py +264 -0
  308. brainlayer-1.2.0/extensions/brainlayer-plugin/scripts/queue-flusher.py +97 -0
  309. brainlayer-1.2.0/extensions/brainlayer-plugin/skills/memory/SKILL.md +14 -0
  310. brainlayer-1.2.0/findings.md +253 -0
  311. brainlayer-1.2.0/greptile.json +33 -0
  312. brainlayer-1.2.0/hooks/brainbar-postcompact.py +75 -0
  313. brainlayer-1.2.0/hooks/brainbar-prompt-capture.py +37 -0
  314. brainlayer-1.2.0/hooks/brainbar-stop-index.py +145 -0
  315. brainlayer-1.2.0/hooks/brainlayer-prompt-search.py +1326 -0
  316. brainlayer-1.2.0/hooks/brainlayer-session-start.py +336 -0
  317. brainlayer-1.2.0/hooks/dedup_coordination.py +186 -0
  318. brainlayer-1.2.0/hooks/post-commit.py +82 -0
  319. brainlayer-1.2.0/hooks/session-cleanup.py +174 -0
  320. brainlayer-1.2.0/landing/index.html +1611 -0
  321. brainlayer-1.2.0/landing/logos/claude.svg +1 -0
  322. brainlayer-1.2.0/landing/logos/cursor.svg +12 -0
  323. brainlayer-1.2.0/landing/logos/gemini.svg +1 -0
  324. brainlayer-1.2.0/landing/logos/kiro.svg +11 -0
  325. brainlayer-1.2.0/landing/logos/openai.svg +1 -0
  326. brainlayer-1.2.0/landing/logos/vscode.svg +1 -0
  327. brainlayer-1.2.0/landing/logos/zed.svg +1 -0
  328. brainlayer-1.2.0/launchd/com.brainlayer.jsonl-backup.plist +50 -0
  329. brainlayer-1.2.0/launchd/com.brainlayer.watch.plist +59 -0
  330. brainlayer-1.2.0/launchd/install-newsyslog.sh +65 -0
  331. brainlayer-1.2.0/launchd/newsyslog.d/README.md +31 -0
  332. brainlayer-1.2.0/launchd/newsyslog.d/brainlayer.conf +16 -0
  333. brainlayer-1.2.0/macroscope.md +31 -0
  334. brainlayer-1.2.0/migrations/002_decay_columns.sql +9 -0
  335. brainlayer-1.2.0/migrations/003_raw_entities_json.sql +1 -0
  336. brainlayer-1.2.0/migrations/004_enrich_status.sql +22 -0
  337. {brainlayer-1.0.0 → brainlayer-1.2.0}/mkdocs.yml +8 -0
  338. brainlayer-1.2.0/overrides/main.html +30 -0
  339. brainlayer-1.2.0/prd-json/index.json +13 -0
  340. brainlayer-1.2.0/prd-json/stories/BUG-005.json +31 -0
  341. brainlayer-1.2.0/prd-json/stories/MP-003.json +35 -0
  342. brainlayer-1.2.0/prd-json/stories/MP-004.json +43 -0
  343. brainlayer-1.2.0/prd-json/stories/US-001.json +35 -0
  344. brainlayer-1.2.0/prd-json/stories/US-002.json +39 -0
  345. brainlayer-1.2.0/progress.txt +57 -0
  346. {brainlayer-1.0.0 → brainlayer-1.2.0}/pyproject.toml +42 -15
  347. brainlayer-1.2.0/results/abcde_n893_summary.json +60 -0
  348. brainlayer-1.2.0/results/abcde_n893_summary.md +33 -0
  349. brainlayer-1.2.0/scripts/__init__.py +1 -0
  350. brainlayer-1.2.0/scripts/abcde_report.py +301 -0
  351. {brainlayer-1.0.0 → brainlayer-1.2.0}/scripts/backfill-context.py +2 -1
  352. {brainlayer-1.0.0 → brainlayer-1.2.0}/scripts/backfill-metadata.py +2 -1
  353. brainlayer-1.2.0/scripts/backfill_chunk_origin_provenance.py +62 -0
  354. brainlayer-1.2.0/scripts/backfill_content_class.py +225 -0
  355. brainlayer-1.2.0/scripts/backfill_decay.py +21 -0
  356. brainlayer-1.2.0/scripts/backfill_dedupe.py +7 -0
  357. brainlayer-1.2.0/scripts/backfill_kg_promotion.py +15 -0
  358. brainlayer-1.2.0/scripts/backfill_orchestrate.sh +88 -0
  359. brainlayer-1.2.0/scripts/batch_submit_paced.py +106 -0
  360. brainlayer-1.2.0/scripts/build_qrels.py +150 -0
  361. brainlayer-1.2.0/scripts/calibrate_importance.py +70 -0
  362. {brainlayer-1.0.0 → brainlayer-1.2.0}/scripts/classify-all.py +2 -1
  363. brainlayer-1.2.0/scripts/cleanup-profanity-chunks.py +196 -0
  364. brainlayer-1.2.0/scripts/cleanup_stale_mcp.py +179 -0
  365. brainlayer-1.2.0/scripts/cloud_backfill.py +22 -0
  366. {brainlayer-1.0.0 → brainlayer-1.2.0}/scripts/cloud_stream.py +2 -1
  367. brainlayer-1.2.0/scripts/dedup_entities.py +223 -0
  368. brainlayer-1.2.0/scripts/diarize_episodes.py +408 -0
  369. brainlayer-1.2.0/scripts/drain_daemon.py +17 -0
  370. brainlayer-1.2.0/scripts/enrich_recent.py +189 -0
  371. brainlayer-1.2.0/scripts/enrichment_backfill.py +185 -0
  372. brainlayer-1.2.0/scripts/enrichment_llm_judge.py +14 -0
  373. brainlayer-1.2.0/scripts/enrichment_pilot.py +420 -0
  374. brainlayer-1.2.0/scripts/enrichment_quality_benchmark.py +14 -0
  375. brainlayer-1.2.0/scripts/export_lexical_defense_snapshot.py +58 -0
  376. brainlayer-1.2.0/scripts/generate-fixtures.sh +193 -0
  377. brainlayer-1.2.0/scripts/generate_abcde_variants.py +195 -0
  378. {brainlayer-1.0.0 → brainlayer-1.2.0}/scripts/generate_style_card.py +2 -8
  379. brainlayer-1.2.0/scripts/hot_currentness_benchmark.py +619 -0
  380. brainlayer-1.2.0/scripts/hotlane_brainbar_daemon.py +208 -0
  381. {brainlayer-1.0.0 → brainlayer-1.2.0}/scripts/index_youtube.py +116 -2
  382. brainlayer-1.2.0/scripts/install-karabiner-rule.sh +65 -0
  383. brainlayer-1.2.0/scripts/kg_backfill.py +88 -0
  384. brainlayer-1.2.0/scripts/kg_cleanup.py +327 -0
  385. brainlayer-1.2.0/scripts/kg_cleanup_apply.py +273 -0
  386. brainlayer-1.2.0/scripts/kg_cleanup_dryrun.py +246 -0
  387. brainlayer-1.2.0/scripts/kg_dedup.py +170 -0
  388. brainlayer-1.2.0/scripts/kg_entity_dedup.py +1010 -0
  389. brainlayer-1.2.0/scripts/kg_entity_judge.py +78 -0
  390. brainlayer-1.2.0/scripts/kg_flag_batch.py +160 -0
  391. brainlayer-1.2.0/scripts/kg_p2_crosstype_cleanup.py +565 -0
  392. brainlayer-1.2.0/scripts/kg_p2_safe_cleanup.py +347 -0
  393. brainlayer-1.2.0/scripts/kg_rebuild.py +363 -0
  394. brainlayer-1.2.0/scripts/kg_review_session.py +73 -0
  395. brainlayer-1.2.0/scripts/kg_session_finish.py +12 -0
  396. brainlayer-1.2.0/scripts/kg_session_harvest.py +12 -0
  397. brainlayer-1.2.0/scripts/launchd/backup-daily.sh +16 -0
  398. brainlayer-1.2.0/scripts/launchd/brainlayer-env-run.sh +76 -0
  399. brainlayer-1.2.0/scripts/launchd/brainlayer.env.example +41 -0
  400. brainlayer-1.2.0/scripts/launchd/com.brainlayer.backup-daily.plist +52 -0
  401. brainlayer-1.2.0/scripts/launchd/com.brainlayer.decay.plist +54 -0
  402. brainlayer-1.2.0/scripts/launchd/com.brainlayer.drain.plist +58 -0
  403. brainlayer-1.2.0/scripts/launchd/com.brainlayer.enrichment.plist +61 -0
  404. brainlayer-1.2.0/scripts/launchd/com.brainlayer.index.plist +51 -0
  405. brainlayer-1.2.0/scripts/launchd/com.brainlayer.jsonl-backup.plist +52 -0
  406. brainlayer-1.2.0/scripts/launchd/com.brainlayer.maintenance-nightly.plist +55 -0
  407. brainlayer-1.2.0/scripts/launchd/com.brainlayer.maintenance-weekly.plist +57 -0
  408. brainlayer-1.2.0/scripts/launchd/com.brainlayer.repair-fts.plist +53 -0
  409. brainlayer-1.2.0/scripts/launchd/com.brainlayer.wal-checkpoint.plist +55 -0
  410. brainlayer-1.2.0/scripts/launchd/com.brainlayer.watch.plist +58 -0
  411. brainlayer-1.2.0/scripts/launchd/install.sh +296 -0
  412. brainlayer-1.2.0/scripts/launchd/jsonl-backup.sh +14 -0
  413. brainlayer-1.2.0/scripts/maintenance/brainlayer_maintenance.py +17 -0
  414. brainlayer-1.2.0/scripts/merge_queue.py +65 -0
  415. brainlayer-1.2.0/scripts/mine_corrections.py +38 -0
  416. brainlayer-1.2.0/scripts/mine_failed_queries.py +245 -0
  417. brainlayer-1.2.0/scripts/mine_frustrations.py +77 -0
  418. brainlayer-1.2.0/scripts/monitor_batch_reenrichment.py +142 -0
  419. brainlayer-1.2.0/scripts/p0_longitudinal_count.py +104 -0
  420. brainlayer-1.2.0/scripts/phase-boundaries.py +86 -0
  421. {brainlayer-1.0.0 → brainlayer-1.2.0}/scripts/pre-label.py +2 -1
  422. brainlayer-1.2.0/scripts/promote_tag_entities.py +42 -0
  423. brainlayer-1.2.0/scripts/purge_orphaned_vectors.py +167 -0
  424. brainlayer-1.2.0/scripts/quarantine_noise.py +435 -0
  425. brainlayer-1.2.0/scripts/rebuild_vec0_tables.py +295 -0
  426. {brainlayer-1.0.0 → brainlayer-1.2.0}/scripts/reembed_bge_m3.py +5 -1
  427. brainlayer-1.2.0/scripts/reembed_bgem3.py +293 -0
  428. brainlayer-1.2.0/scripts/replay_brain_store_fallbacks.py +108 -0
  429. brainlayer-1.2.0/scripts/resimhash_dedupe.py +21 -0
  430. brainlayer-1.2.0/scripts/run_abcde_enrich.py +170 -0
  431. brainlayer-1.2.0/scripts/run_benchmark.py +92 -0
  432. brainlayer-1.2.0/scripts/run_decay_job.py +47 -0
  433. brainlayer-1.2.0/scripts/run_evals.py +95 -0
  434. brainlayer-1.2.0/scripts/run_tests.sh +313 -0
  435. brainlayer-1.2.0/scripts/scope-config.py +100 -0
  436. brainlayer-1.2.0/scripts/score_entity_health.py +322 -0
  437. brainlayer-1.2.0/scripts/seed_agent_profiles.py +36 -0
  438. brainlayer-1.2.0/scripts/seed_aliases.py +67 -0
  439. brainlayer-1.2.0/scripts/smoke/README.md +1 -0
  440. brainlayer-1.2.0/scripts/smoke/firstturn-brainlayer-smoke.sh +83 -0
  441. brainlayer-1.2.0/scripts/smoke/repogolem_mcp_transport_smoke.py +134 -0
  442. brainlayer-1.2.0/scripts/tombstone_singleton_tags.py +53 -0
  443. {brainlayer-1.0.0 → brainlayer-1.2.0}/scripts/verify_hebrew_search.py +5 -1
  444. brainlayer-1.2.0/scripts/wal_checkpoint.py +65 -0
  445. brainlayer-1.2.0/server.json +44 -0
  446. {brainlayer-1.0.0 → brainlayer-1.2.0}/src/brainlayer/__init__.py +1 -1
  447. brainlayer-1.2.0/src/brainlayer/_helpers.py +80 -0
  448. brainlayer-1.2.0/src/brainlayer/agent_profiles.py +140 -0
  449. brainlayer-1.2.0/src/brainlayer/backup_daily.py +790 -0
  450. brainlayer-1.2.0/src/brainlayer/bitemporal.py +183 -0
  451. brainlayer-1.2.0/src/brainlayer/brainbar_hybrid_helper.py +275 -0
  452. brainlayer-1.2.0/src/brainlayer/calibrate.py +304 -0
  453. brainlayer-1.2.0/src/brainlayer/chunk_origin.py +64 -0
  454. brainlayer-1.2.0/src/brainlayer/chunk_origin_backfill.py +193 -0
  455. brainlayer-1.2.0/src/brainlayer/classify.py +75 -0
  456. brainlayer-1.2.0/src/brainlayer/claude_paths.py +17 -0
  457. {brainlayer-1.0.0 → brainlayer-1.2.0}/src/brainlayer/cli/__init__.py +1046 -41
  458. brainlayer-1.2.0/src/brainlayer/cli/wizard.py +277 -0
  459. {brainlayer-1.0.0 → brainlayer-1.2.0}/src/brainlayer/cli_new.py +99 -19
  460. brainlayer-1.2.0/src/brainlayer/cloud_backfill.py +1296 -0
  461. {brainlayer-1.0.0 → brainlayer-1.2.0}/src/brainlayer/clustering.py +3 -2
  462. brainlayer-1.2.0/src/brainlayer/config.py +159 -0
  463. brainlayer-1.2.0/src/brainlayer/content_class.py +274 -0
  464. brainlayer-1.2.0/src/brainlayer/correction_judge.py +171 -0
  465. brainlayer-1.2.0/src/brainlayer/decay.py +27 -0
  466. brainlayer-1.2.0/src/brainlayer/decay_backfill.py +90 -0
  467. brainlayer-1.2.0/src/brainlayer/decay_job.py +163 -0
  468. brainlayer-1.2.0/src/brainlayer/dedupe.py +1181 -0
  469. brainlayer-1.2.0/src/brainlayer/drain.py +1196 -0
  470. {brainlayer-1.0.0 → brainlayer-1.2.0}/src/brainlayer/embeddings.py +48 -17
  471. {brainlayer-1.0.0 → brainlayer-1.2.0}/src/brainlayer/engine.py +15 -0
  472. brainlayer-1.2.0/src/brainlayer/enrichment_controller.py +1768 -0
  473. brainlayer-1.2.0/src/brainlayer/eval/__init__.py +77 -0
  474. brainlayer-1.2.0/src/brainlayer/eval/abcde_enrich_runner.py +479 -0
  475. brainlayer-1.2.0/src/brainlayer/eval/abcde_variants.py +134 -0
  476. brainlayer-1.2.0/src/brainlayer/eval/abcde_variants.yaml +323 -0
  477. brainlayer-1.2.0/src/brainlayer/eval/benchmark.py +469 -0
  478. brainlayer-1.2.0/src/brainlayer/eval/enrichment_gold.py +291 -0
  479. brainlayer-1.2.0/src/brainlayer/eval/enrichment_graders.py +494 -0
  480. brainlayer-1.2.0/src/brainlayer/eval/enrichment_judge.py +441 -0
  481. brainlayer-1.2.0/src/brainlayer/eval/enrichment_llm_judge.py +365 -0
  482. brainlayer-1.2.0/src/brainlayer/eval/enrichment_quality_benchmark.py +784 -0
  483. brainlayer-1.2.0/src/brainlayer/eval/experiment_store.py +321 -0
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  485. brainlayer-1.2.0/src/brainlayer/eval/labeling/enrichment-labeler.html +318 -0
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  752. brainlayer-1.2.0/tests/test_search_chunk_id.py +175 -0
  753. brainlayer-1.2.0/tests/test_search_exact_chunk_id.py +367 -0
  754. brainlayer-1.2.0/tests/test_search_filter_params.py +781 -0
  755. brainlayer-1.2.0/tests/test_search_gaps.py +313 -0
  756. brainlayer-1.2.0/tests/test_search_handler.py +247 -0
  757. brainlayer-1.2.0/tests/test_search_profile.py +158 -0
  758. brainlayer-1.2.0/tests/test_search_quality.py +552 -0
  759. brainlayer-1.2.0/tests/test_search_routing.py +164 -0
  760. brainlayer-1.2.0/tests/test_search_trigram_fts.py +118 -0
  761. brainlayer-1.2.0/tests/test_search_validation.py +518 -0
  762. {brainlayer-1.0.0 → brainlayer-1.2.0}/tests/test_session_enrichment.py +31 -0
  763. brainlayer-1.2.0/tests/test_session_enrichment_candidates.py +217 -0
  764. brainlayer-1.2.0/tests/test_smart_search_entity_dedup.py +400 -0
  765. brainlayer-1.2.0/tests/test_stale_index_fixture.py +16 -0
  766. brainlayer-1.2.0/tests/test_stop_hook_created_at.py +48 -0
  767. brainlayer-1.2.0/tests/test_store_handler.py +313 -0
  768. brainlayer-1.2.0/tests/test_tag_entity_promotion.py +143 -0
  769. brainlayer-1.2.0/tests/test_telemetry.py +177 -0
  770. {brainlayer-1.0.0 → brainlayer-1.2.0}/tests/test_think_recall_integration.py +13 -18
  771. brainlayer-1.2.0/tests/test_tool_annotations.py +147 -0
  772. brainlayer-1.2.0/tests/test_tool_description_quality.py +41 -0
  773. brainlayer-1.2.0/tests/test_transport_replay_attribution.py +298 -0
  774. brainlayer-1.2.0/tests/test_truncation.py +52 -0
  775. {brainlayer-1.0.0 → brainlayer-1.2.0}/tests/test_vector_store.py +1 -1
  776. brainlayer-1.2.0/tests/test_vector_store_pragma_tuning.py +126 -0
  777. brainlayer-1.2.0/tests/test_vector_store_readonly.py +236 -0
  778. brainlayer-1.2.0/tests/test_vector_store_schema_flags.py +24 -0
  779. brainlayer-1.2.0/tests/test_wal_checkpoint_module.py +28 -0
  780. brainlayer-1.2.0/tests/test_watcher_bridge.py +506 -0
  781. brainlayer-1.2.0/tests/test_wizard.py +101 -0
  782. brainlayer-1.2.0/tests/test_write_queue.py +1445 -0
  783. brainlayer-1.2.0/tests/test_write_resilience_under_load.py +169 -0
  784. brainlayer-1.2.0/tests/test_writer_pidfile_mutex.py +764 -0
  785. brainlayer-1.0.0/.github/workflows/ci.yml +0 -55
  786. brainlayer-1.0.0/.gitignore +0 -55
  787. brainlayer-1.0.0/CHANGELOG.md +0 -19
  788. brainlayer-1.0.0/CLAUDE.md +0 -456
  789. brainlayer-1.0.0/PKG-INFO +0 -313
  790. brainlayer-1.0.0/README.md +0 -255
  791. brainlayer-1.0.0/docs/configuration.md +0 -64
  792. brainlayer-1.0.0/docs/mcp-config.md +0 -42
  793. brainlayer-1.0.0/docs/mcp-tools.md +0 -206
  794. brainlayer-1.0.0/docs/research/session-enrichment/brainstore-write-tools.md +0 -33
  795. brainlayer-1.0.0/docs/stylesheets/extra.css +0 -37
  796. brainlayer-1.0.0/scripts/cloud_backfill.py +0 -757
  797. brainlayer-1.0.0/scripts/launchd/com.brainlayer.enrich.plist +0 -45
  798. brainlayer-1.0.0/scripts/launchd/com.brainlayer.index.plist +0 -36
  799. brainlayer-1.0.0/scripts/launchd/install.sh +0 -82
  800. brainlayer-1.0.0/scripts/test_extraction.py +0 -126
  801. brainlayer-1.0.0/server.json +0 -32
  802. brainlayer-1.0.0/src/brainlayer/cli/wizard.py +0 -132
  803. brainlayer-1.0.0/src/brainlayer/client.py +0 -164
  804. brainlayer-1.0.0/src/brainlayer/daemon.py +0 -1105
  805. brainlayer-1.0.0/src/brainlayer/dashboard/README.md +0 -129
  806. brainlayer-1.0.0/src/brainlayer/dashboard/__init__.py +0 -5
  807. brainlayer-1.0.0/src/brainlayer/dashboard/app.py +0 -151
  808. brainlayer-1.0.0/src/brainlayer/dashboard/search.py +0 -229
  809. brainlayer-1.0.0/src/brainlayer/dashboard/views.py +0 -230
  810. brainlayer-1.0.0/src/brainlayer/mcp/__init__.py +0 -1558
  811. brainlayer-1.0.0/src/brainlayer/paths.py +0 -43
  812. brainlayer-1.0.0/src/brainlayer/pipeline/enrichment.py +0 -810
  813. brainlayer-1.0.0/src/brainlayer/store.py +0 -155
  814. brainlayer-1.0.0/src/brainlayer/vector_store.py +0 -1891
  815. brainlayer-1.0.0/tests/conftest.py +0 -15
  816. brainlayer-1.0.0/tests/test_brainstore.py +0 -321
  817. brainlayer-1.0.0/tests/test_wizard.py +0 -25
  818. {brainlayer-1.0.0 → brainlayer-1.2.0}/.github/workflows/docs.yml +0 -0
  819. {brainlayer-1.0.0 → brainlayer-1.2.0}/.github/workflows/publish.yml +0 -0
  820. {brainlayer-1.0.0 → brainlayer-1.2.0}/LICENSE +0 -0
  821. {brainlayer-1.0.0 → brainlayer-1.2.0}/docs/archive/chat-based-analysis-design.md +0 -0
  822. {brainlayer-1.0.0 → brainlayer-1.2.0}/docs/archive/chat-tags-example.yaml +0 -0
  823. {brainlayer-1.0.0 → brainlayer-1.2.0}/docs/archive/communication-analysis.md +0 -0
  824. {brainlayer-1.0.0 → brainlayer-1.2.0}/docs/archive/hierarchical-clustering-deep-research.md +0 -0
  825. {brainlayer-1.0.0 → brainlayer-1.2.0}/docs/archive/hierarchical-clustering-research.txt +0 -0
  826. {brainlayer-1.0.0 → brainlayer-1.2.0}/docs/archive/research-chat-based-analysis.md +0 -0
  827. {brainlayer-1.0.0 → brainlayer-1.2.0}/docs/archive/research-prompt-embeddings.md +0 -0
  828. {brainlayer-1.0.0 → brainlayer-1.2.0}/docs/contributing.md +0 -0
  829. {brainlayer-1.0.0 → brainlayer-1.2.0}/docs/embedding-setup.md +0 -0
  830. {brainlayer-1.0.0 → brainlayer-1.2.0}/docs/enrichment.md +0 -0
  831. {brainlayer-1.0.0 → brainlayer-1.2.0}/docs/local-models-guide.md +0 -0
  832. {brainlayer-1.0.0 → brainlayer-1.2.0}/docs/research/session-enrichment/auto-extracting-learnings.md +0 -0
  833. {brainlayer-1.0.0 → brainlayer-1.2.0}/docs/research/session-enrichment/cli-ux-patterns.md +0 -0
  834. {brainlayer-1.0.0 → brainlayer-1.2.0}/docs/research/session-enrichment/conversation-reconstruction.md +0 -0
  835. {brainlayer-1.0.0 → brainlayer-1.2.0}/docs/research/session-enrichment/session-enrichment-architecture.md +0 -0
  836. {brainlayer-1.0.0 → brainlayer-1.2.0}/docs/showcase-claude-collab-discovery.md +0 -0
  837. /brainlayer-1.0.0/docs/assets/logo.svg → /brainlayer-1.2.0/landing/logos/brainlayer.svg +0 -0
  838. {brainlayer-1.0.0 → brainlayer-1.2.0}/scripts/backfill-created-at.py +0 -0
  839. {brainlayer-1.0.0 → brainlayer-1.2.0}/scripts/backfill_data/.gitignore +0 -0
  840. {brainlayer-1.0.0 → brainlayer-1.2.0}/scripts/label-chunks.py +0 -0
  841. {brainlayer-1.0.0 → brainlayer-1.2.0}/scripts/run-second-analysis-after-first.sh +0 -0
  842. {brainlayer-1.0.0 → brainlayer-1.2.0}/scripts/train-setfit.py +0 -0
  843. {brainlayer-1.0.0 → brainlayer-1.2.0}/scripts/vertex_poll_import.py +0 -0
  844. {brainlayer-1.0.0 → brainlayer-1.2.0}/src/brainlayer/pipeline/__init__.py +0 -0
  845. {brainlayer-1.0.0 → brainlayer-1.2.0}/src/brainlayer/pipeline/analyze_communication.py +0 -0
  846. {brainlayer-1.0.0 → brainlayer-1.2.0}/src/brainlayer/pipeline/chat_tags.py +0 -0
  847. {brainlayer-1.0.0 → brainlayer-1.2.0}/src/brainlayer/pipeline/chunk.py +0 -0
  848. {brainlayer-1.0.0 → brainlayer-1.2.0}/src/brainlayer/pipeline/cluster_sampling.py +0 -0
  849. {brainlayer-1.0.0 → brainlayer-1.2.0}/src/brainlayer/pipeline/extract.py +0 -0
  850. {brainlayer-1.0.0 → brainlayer-1.2.0}/src/brainlayer/pipeline/extract_claude_desktop.py +0 -0
  851. {brainlayer-1.0.0 → brainlayer-1.2.0}/src/brainlayer/pipeline/extract_corrections.py +0 -0
  852. {brainlayer-1.0.0 → brainlayer-1.2.0}/src/brainlayer/pipeline/extract_markdown.py +0 -0
  853. {brainlayer-1.0.0 → brainlayer-1.2.0}/src/brainlayer/pipeline/extract_whatsapp.py +0 -0
  854. {brainlayer-1.0.0 → brainlayer-1.2.0}/src/brainlayer/pipeline/longitudinal_analyzer.py +0 -0
  855. {brainlayer-1.0.0 → brainlayer-1.2.0}/src/brainlayer/pipeline/obsidian_export.py +0 -0
  856. {brainlayer-1.0.0 → brainlayer-1.2.0}/src/brainlayer/pipeline/plan_linking.py +0 -0
  857. {brainlayer-1.0.0 → brainlayer-1.2.0}/src/brainlayer/pipeline/sanitize.py +0 -0
  858. {brainlayer-1.0.0 → brainlayer-1.2.0}/src/brainlayer/pipeline/style_embed.py +0 -0
  859. {brainlayer-1.0.0 → brainlayer-1.2.0}/src/brainlayer/pipeline/style_index.py +0 -0
  860. {brainlayer-1.0.0 → brainlayer-1.2.0}/src/brainlayer/pipeline/temporal_chains.py +0 -0
  861. {brainlayer-1.0.0 → brainlayer-1.2.0}/src/brainlayer/pipeline/time_batcher.py +0 -0
  862. {brainlayer-1.0.0 → brainlayer-1.2.0}/src/brainlayer/storage.py +0 -0
  863. {brainlayer-1.0.0 → brainlayer-1.2.0}/src/brainlayer/taxonomy.json +0 -0
  864. {brainlayer-1.0.0 → brainlayer-1.2.0}/tests/__init__.py +0 -0
  865. {brainlayer-1.0.0 → brainlayer-1.2.0}/tests/test_chat_list.py +0 -0
  866. {brainlayer-1.0.0 → brainlayer-1.2.0}/tests/test_chunk.py +0 -0
  867. {brainlayer-1.0.0 → brainlayer-1.2.0}/tests/test_chunker.py +0 -0
  868. {brainlayer-1.0.0 → brainlayer-1.2.0}/tests/test_dashboard.py +0 -0
  869. {brainlayer-1.0.0 → brainlayer-1.2.0}/tests/test_enrichment_threshold.py +0 -0
  870. {brainlayer-1.0.0 → brainlayer-1.2.0}/tests/test_extract_markdown.py +0 -0
  871. {brainlayer-1.0.0 → brainlayer-1.2.0}/tests/test_normalize_project.py +0 -0
  872. {brainlayer-1.0.0 → brainlayer-1.2.0}/tests/test_sanitize.py +0 -0
  873. {brainlayer-1.0.0 → brainlayer-1.2.0}/tests/test_semantic_style.py +0 -0
  874. {brainlayer-1.0.0 → brainlayer-1.2.0}/tests/test_storage.py +0 -0
@@ -0,0 +1,13 @@
1
+ {
2
+ "name": "brainlayer",
3
+ "owner": {
4
+ "name": "Etan Heyman",
5
+ "url": "https://github.com/EtanHey"
6
+ },
7
+ "plugins": [
8
+ {
9
+ "name": "brainlayer",
10
+ "source": "./extensions/brainlayer-plugin"
11
+ }
12
+ ]
13
+ }
@@ -0,0 +1,21 @@
1
+ # .claude.local.md — Machine-Specific Config
2
+ # Copy to .claude.local.md and customize for your machine.
3
+ # This file is gitignored — safe for local paths, ports, and overrides.
4
+
5
+ ## Local Paths
6
+ # - Repo: /Users/YOURUSERNAME/Gits/brainlayer
7
+ # - Python venv: /Users/YOURUSERNAME/Gits/brainlayer/.venv
8
+ # - BrainLayer DB: /Users/YOURUSERNAME/Library/Application Support/BrainBar/brainlayer.db
9
+
10
+ ## BrainBar Daemon
11
+ # - Socket: /tmp/brainbar.sock
12
+ # - App: /Users/YOURUSERNAME/Applications/BrainBar.app
13
+
14
+ ## Enrichment Config
15
+ # - BRAINLAYER_ENRICH_BACKEND: mlx (default on Apple Silicon) or ollama
16
+ # - Auto-enrich on brain_store uses Gemini Flash Lite (separate from backend)
17
+ # - Gemini API key location: 1Password vault "development"
18
+
19
+ ## Dev Flags
20
+ # - debug_mode: false
21
+ # - test_db_path: /tmp/brainlayer-test.db
@@ -0,0 +1,2 @@
1
+ # Mark test fixtures as generated to exclude from language stats
2
+ tests/fixtures/*.json linguist-generated=true
@@ -0,0 +1,38 @@
1
+ #!/usr/bin/env bash
2
+ # Pre-push hook — regression harness gate
3
+ #
4
+ # NOT FRICTION — discipline. The 5-day regression cycle in this repo
5
+ # exists because past pushes bypassed checks. This hook stops that.
6
+ #
7
+ # DO NOT BYPASS:
8
+ # git push --no-verify ← sneaks past the hook
9
+ # chmod -x .githooks/pre-push ← disables it
10
+ #
11
+ # DO NOT SILENCE FAILURES:
12
+ # A failing test = a real bug. The Zero-RMS Hang recurred Apr 2 → Apr 27
13
+ # because symptomatic fixes shipped without root-cause coverage.
14
+ # Treat each failure as CRITICAL REVIEW TIME.
15
+
16
+ set -uo pipefail
17
+ [ ! -f scripts/run_tests.sh ] && { echo "⚠️ no scripts/run_tests.sh — skipping"; exit 0; }
18
+ BRAINLAYER_PREPUSH=1 bash scripts/run_tests.sh
19
+ exit_status=$?
20
+
21
+ if [ $exit_status -ne 0 ]; then
22
+ cat <<'BANNER'
23
+
24
+ 🛑 PUSH BLOCKED — regression harness failed.
25
+
26
+ This is a real regression. DO NOT bypass with --no-verify or silence the test.
27
+ 1. Read the failure carefully
28
+ 2. Reproduce locally
29
+ 3. Fix the underlying bug
30
+ 4. If the test IS wrong, separate PR with rationale
31
+
32
+ The 5-day regression cycle exists because past pushes bypassed checks.
33
+
34
+ BANNER
35
+ exit $exit_status
36
+ fi
37
+
38
+ exit 0
@@ -0,0 +1,113 @@
1
+ name: CI
2
+
3
+ on:
4
+ push:
5
+ branches: [main]
6
+ pull_request:
7
+ branches: [main]
8
+
9
+ jobs:
10
+ test:
11
+ runs-on: ubuntu-latest
12
+ strategy:
13
+ matrix:
14
+ python-version: ["3.11", "3.12", "3.13"]
15
+ steps:
16
+ - uses: actions/checkout@v4
17
+
18
+ - uses: actions/setup-python@v5
19
+ with:
20
+ python-version: ${{ matrix.python-version }}
21
+
22
+ - name: Free runner disk
23
+ run: |
24
+ df -h
25
+ sudo rm -rf /usr/local/lib/android /usr/share/dotnet /opt/ghc /opt/hostedtoolcache/CodeQL || true
26
+ df -h
27
+
28
+ - name: Cache pip
29
+ uses: actions/cache@v4
30
+ with:
31
+ path: ~/.cache/pip
32
+ key: ${{ runner.os }}-pip-${{ matrix.python-version }}-${{ hashFiles('pyproject.toml') }}
33
+ restore-keys: ${{ runner.os }}-pip-${{ matrix.python-version }}-
34
+
35
+ - name: Cache Hugging Face models
36
+ uses: actions/cache@v4
37
+ with:
38
+ path: ~/.cache/huggingface
39
+ key: ${{ runner.os }}-hf-bge-large-en-v1.5-bge-m3
40
+
41
+ - name: Install
42
+ run: pip install -e ".[dev]"
43
+
44
+ - name: Warm Hugging Face model cache
45
+ run: |
46
+ python - <<'PY'
47
+ import time
48
+
49
+ from huggingface_hub import snapshot_download
50
+
51
+ model_ids = ["BAAI/bge-large-en-v1.5", "BAAI/bge-m3"]
52
+ delays = [5, 15, 30]
53
+
54
+ for model_id in model_ids:
55
+ for attempt in range(1, len(delays) + 2):
56
+ try:
57
+ snapshot_download(repo_id=model_id)
58
+ print(f"Warmed Hugging Face cache for {model_id}")
59
+ break
60
+ except Exception as exc:
61
+ if attempt == len(delays) + 1:
62
+ print(f"::warning::Unable to warm Hugging Face cache for {model_id}: {exc!r}")
63
+ break
64
+ delay = delays[attempt - 1]
65
+ print(f"Unable to warm Hugging Face cache for {model_id} on attempt {attempt}; retrying in {delay}s: {exc!r}")
66
+ time.sleep(delay)
67
+ PY
68
+
69
+ - name: Unit tests
70
+ env:
71
+ HF_HUB_OFFLINE: "1"
72
+ TRANSFORMERS_OFFLINE: "1"
73
+ run: >
74
+ pytest tests/ -v --tb=short -m "not integration and not live" -x
75
+ --ignore=tests/test_eval_framework.py
76
+ --ignore=tests/test_follow_up_rewrite.py
77
+ --ignore=tests/test_prompt_classification.py
78
+
79
+ - name: Isolated eval and hook routing tests
80
+ env:
81
+ HF_HUB_OFFLINE: "1"
82
+ TRANSFORMERS_OFFLINE: "1"
83
+ run: >
84
+ pytest
85
+ tests/test_eval_framework.py
86
+ tests/test_follow_up_rewrite.py
87
+ tests/test_prompt_classification.py
88
+ -v --tb=short -x
89
+
90
+ - name: MCP tool registration
91
+ env:
92
+ HF_HUB_OFFLINE: "1"
93
+ TRANSFORMERS_OFFLINE: "1"
94
+ run: pytest tests/test_think_recall_integration.py::TestMCPToolCount -v --tb=short
95
+
96
+ lint:
97
+ runs-on: ubuntu-latest
98
+ steps:
99
+ - uses: actions/checkout@v4
100
+
101
+ - uses: actions/setup-python@v5
102
+ with:
103
+ python-version: "3.13"
104
+
105
+ - name: Cache pip
106
+ uses: actions/cache@v4
107
+ with:
108
+ path: ~/.cache/pip
109
+ key: ${{ runner.os }}-pip-lint-${{ hashFiles('pyproject.toml') }}
110
+
111
+ - run: pip install ruff
112
+ - run: ruff check src/ tests/
113
+ - run: ruff format --check src/ tests/
@@ -0,0 +1,84 @@
1
+ # Python
2
+ __pycache__/
3
+ *.py[cod]
4
+ *$py.class
5
+ *.so
6
+ .venv/
7
+ venv/
8
+ env/
9
+
10
+ # Build
11
+ dist/
12
+ build/
13
+ *.egg-info/
14
+ *.egg
15
+ # MkDocs build output (not our Next.js site/ directory)
16
+ docs/site/
17
+ site/node_modules/
18
+ site/.next/
19
+
20
+ # Testing
21
+ .pytest_cache/
22
+ .ruff_cache/
23
+ htmlcov/
24
+ .coverage
25
+ .tox/
26
+
27
+ # Data
28
+ *.db
29
+ *.db-wal
30
+ *.db-shm
31
+ data/
32
+
33
+ # Secrets
34
+ .env
35
+ .env.local
36
+ .env.*.local
37
+
38
+ # IDE
39
+ .idea/
40
+ .vscode/
41
+ *.swp
42
+ *.swo
43
+ *~
44
+
45
+ # Local working files (audit logs, prompts, scratch)
46
+ .tmp-*
47
+ grill*/
48
+ docs.local/
49
+
50
+ # Internal planning docs (contain cross-repo references)
51
+ docs/plan/
52
+
53
+ # OS
54
+ .DS_Store
55
+ Thumbs.db
56
+
57
+ # Lock files (reproducible installs handled via pyproject.toml)
58
+ uv.lock
59
+
60
+ # Claude scratchpad
61
+ claude.scratchpad.md
62
+
63
+ # MCP config (contains secrets)
64
+ .mcp.json
65
+ .mcp.json.bak
66
+ !extensions/brainlayer-plugin/.mcp.json
67
+
68
+ # Claude Code project settings
69
+ .claude/
70
+
71
+ # Local eval outputs (tracked baselines remain tracked)
72
+ tests/eval_results/
73
+
74
+ # Raw enriched eval rows contain PERSONAL chunk content — NEVER commit (privacy).
75
+ # Aggregate metrics go in results/ instead; raw rows archived to Brain Drive.
76
+ eval_results/*.jsonl
77
+
78
+ # Progress trackers (ephemeral)
79
+ scripts/.kg_rebuild_progress.json
80
+
81
+ # Machine-local Claude config
82
+ .claude.local.md
83
+ .vercel
84
+ site/
@@ -0,0 +1,19 @@
1
+ {
2
+ "_comment": "Run: ~/Gits/orchestrator/scripts/mcp-setup.sh ~/Gits/brainlayer",
3
+ "_comment2": "brainlayer-socat: BrainBar daemon on Unix socket (replaces 9 Python processes)",
4
+ "mcpServers": {
5
+ "brainlayer": {
6
+ "command": "socat",
7
+ "args": ["STDIO", "UNIX-CONNECT:/tmp/brainbar.sock"]
8
+ },
9
+ "voicelayer": {
10
+ "command": "voicelayer-mcp"
11
+ },
12
+ "cmux": {
13
+ "command": "node",
14
+ "args": [
15
+ "/Users/etanheyman/Gits/orchestrator/tools/cmux-mcp/dist/index.js"
16
+ ]
17
+ }
18
+ }
19
+ }
@@ -0,0 +1,43 @@
1
+ # BrainLayer Agent Notes
2
+
3
+ BrainLayer is the memory layer for the entire ecosystem. If it breaks, every golem degrades into a vanilla LLM with no durable recall.
4
+
5
+ ## Review Guidelines
6
+ - Treat retrieval correctness, write safety, and MCP stability as critical-path concerns.
7
+ - Prefer finding regressions in search quality, lock handling, and tool contracts before style or refactor nits.
8
+ - Flag risky DB or concurrency changes explicitly. Do not hand-wave lock behavior.
9
+
10
+ ## Key Paths
11
+ - `src/brainlayer/`
12
+ - `scripts/`
13
+ - `tests/`
14
+
15
+ ## Database
16
+ - Canonical DB: `~/.local/share/brainlayer/brainlayer.db`
17
+
18
+ ## MCP Tools
19
+ - `brain_search`
20
+ - `brain_store`
21
+ - `brain_recall`
22
+ - `brain_expand`
23
+ - `brain_digest`
24
+ - `brain_entity`
25
+ - `brain_update`
26
+ - `brain_tags`
27
+
28
+ ## Concurrency Rules
29
+ - One write at a time.
30
+ - Reads are safe.
31
+ - `brain_digest` is write-heavy; do not run it in parallel with other MCP work.
32
+
33
+ ## Tests
34
+ - Run `pytest` before claiming behavior changed safely.
35
+ - Current suite size: 929 tests.
36
+
37
+ ## PR Workflow
38
+ - Request `@codex review`.
39
+ - Request `@cursor` and `@bugbot` review.
40
+
41
+ ## Known Issues
42
+ - DB locking during enrichment.
43
+ - WAL can grow to 4.7GB.