brainglobe 1.1.0__tar.gz → 1.3.0__tar.gz

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Files changed (20) hide show
  1. {brainglobe-1.1.0 → brainglobe-1.3.0}/.github/workflows/test_and_deploy.yml +4 -4
  2. {brainglobe-1.1.0 → brainglobe-1.3.0}/PKG-INFO +14 -14
  3. {brainglobe-1.1.0 → brainglobe-1.3.0}/README.md +2 -4
  4. {brainglobe-1.1.0 → brainglobe-1.3.0}/brainglobe.egg-info/PKG-INFO +14 -14
  5. brainglobe-1.3.0/brainglobe.egg-info/requires.txt +23 -0
  6. {brainglobe-1.1.0 → brainglobe-1.3.0}/pyproject.toml +15 -13
  7. brainglobe-1.1.0/brainglobe.egg-info/requires.txt +0 -22
  8. {brainglobe-1.1.0 → brainglobe-1.3.0}/.gitignore +0 -0
  9. {brainglobe-1.1.0 → brainglobe-1.3.0}/CITATION.cff +0 -0
  10. {brainglobe-1.1.0 → brainglobe-1.3.0}/LICENSE +0 -0
  11. {brainglobe-1.1.0 → brainglobe-1.3.0}/MANIFEST.in +0 -0
  12. {brainglobe-1.1.0 → brainglobe-1.3.0}/brainglobe/__init__.py +0 -0
  13. {brainglobe-1.1.0 → brainglobe-1.3.0}/brainglobe.egg-info/SOURCES.txt +0 -0
  14. {brainglobe-1.1.0 → brainglobe-1.3.0}/brainglobe.egg-info/dependency_links.txt +0 -0
  15. {brainglobe-1.1.0 → brainglobe-1.3.0}/brainglobe.egg-info/top_level.txt +0 -0
  16. {brainglobe-1.1.0 → brainglobe-1.3.0}/setup.cfg +0 -0
  17. {brainglobe-1.1.0 → brainglobe-1.3.0}/tests/__init__.py +0 -0
  18. {brainglobe-1.1.0 → brainglobe-1.3.0}/tests/test_integration/__init__.py +0 -0
  19. {brainglobe-1.1.0 → brainglobe-1.3.0}/tests/test_unit/__init__.py +0 -0
  20. {brainglobe-1.1.0 → brainglobe-1.3.0}/tests/test_unit/test__version__.py +0 -0
{brainglobe-1.1.0 → brainglobe-1.3.0}/.github/workflows/test_and_deploy.yml RENAMED
@@ -38,16 +38,16 @@ jobs:
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  strategy:
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  matrix:
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  # Run all supported Python versions on linux
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- python-version: ["3.9", "3.10"]
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+ python-version: ["3.10", "3.11", "3.12"]
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  os: [ubuntu-latest]
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  # Include one windows and macos run
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  include:
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  - os: macos-13 # Intel Mac
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- python-version: "3.10"
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+ python-version: "3.12"
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  - os: macos-latest # ARM Mac
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- python-version: "3.10"
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+ python-version: "3.12"
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  - os: windows-latest
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- python-version: "3.10"
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+ python-version: "3.12"
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  steps:
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  # Run tests
{brainglobe-1.1.0 → brainglobe-1.3.0}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
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  Name: brainglobe
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- Version: 1.1.0
3
+ Version: 1.3.0
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  Summary: Python-based tools for computational neuroanatomy.
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5
  Author-email: BrainGlobe Developers <hello@brainglobe.info>
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  License: BSD-3-Clause
@@ -13,24 +13,26 @@ Project-URL: twitter, https://twitter.com/brain_globe
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  Classifier: Development Status :: 2 - Pre-Alpha
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  Classifier: Programming Language :: Python
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  Classifier: Programming Language :: Python :: 3
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- Classifier: Programming Language :: Python :: 3.9
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  Classifier: Programming Language :: Python :: 3.10
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+ Classifier: Programming Language :: Python :: 3.11
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+ Classifier: Programming Language :: Python :: 3.12
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  Classifier: Operating System :: OS Independent
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  Classifier: License :: OSI Approved :: BSD License
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- Requires-Python: >=3.9.0
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+ Requires-Python: >=3.10.0
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  Description-Content-Type: text/markdown
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  License-File: LICENSE
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- Requires-Dist: brainglobe-atlasapi<3,>=2.0.6
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- Requires-Dist: brainglobe-heatmap<1,>=0.5.2
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+ Requires-Dist: brainglobe-atlasapi<3,>=2.0.7
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+ Requires-Dist: brainglobe-heatmap<1,>=0.5.3
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  Requires-Dist: brainglobe-napari-io<1,>=0.3.4
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- Requires-Dist: brainglobe-segmentation<2,>=1.2.3
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+ Requires-Dist: brainglobe-segmentation<2,>=1.2.4
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  Requires-Dist: brainglobe-space<2,>=1.0.2
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- Requires-Dist: brainglobe-utils<1,>=0.5.0
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- Requires-Dist: brainreg[napari]<2,>=1.0.9
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+ Requires-Dist: brainglobe-utils<1,>=0.6.0
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+ Requires-Dist: brainreg[napari]<2,>=1.0.10
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  Requires-Dist: brainrender-napari<1,>=0.0.3
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- Requires-Dist: brainrender<3,>=2.1.9
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- Requires-Dist: cellfinder[napari]<2,>=1.2.0
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+ Requires-Dist: brainrender<3,>=2.1.10
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+ Requires-Dist: cellfinder[napari]<2,>=1.3.1
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  Requires-Dist: napari[all]
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+ Requires-Dist: brainrender-napari<2,>=0.0.4
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  Provides-Extra: dev
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  Requires-Dist: pytest; extra == "dev"
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  Requires-Dist: pytest-cov; extra == "dev"
@@ -71,10 +73,8 @@ and to update,
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  pip install brainglobe --update
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  ```
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75
 
74
- ## Contributing
75
-
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- **Contributors to BrainGlobe are absolutely encouraged**, whether to fix a bug, develop a new feature, or add a new atlas.
77
- If you would like to contribute, please take a look at our [developer documentation](https://brainglobe.info/developers/index.html).
76
+ ## Seeking help or contributing
77
+ We are always happy to help users of our tools, and welcome any contributions. If you would like to get in contact with us for any reason, please see the [contact page of our website](https://brainglobe.info/contact.html).
78
78
 
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  ---
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{brainglobe-1.1.0 → brainglobe-1.3.0}/README.md RENAMED
@@ -27,10 +27,8 @@ and to update,
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  pip install brainglobe --update
28
28
  ```
29
29
 
30
- ## Contributing
31
-
32
- **Contributors to BrainGlobe are absolutely encouraged**, whether to fix a bug, develop a new feature, or add a new atlas.
33
- If you would like to contribute, please take a look at our [developer documentation](https://brainglobe.info/developers/index.html).
30
+ ## Seeking help or contributing
31
+ We are always happy to help users of our tools, and welcome any contributions. If you would like to get in contact with us for any reason, please see the [contact page of our website](https://brainglobe.info/contact.html).
34
32
 
35
33
  ---
36
34
 
{brainglobe-1.1.0 → brainglobe-1.3.0}/brainglobe.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: brainglobe
3
- Version: 1.1.0
3
+ Version: 1.3.0
4
4
  Summary: Python-based tools for computational neuroanatomy.
5
5
  Author-email: BrainGlobe Developers <hello@brainglobe.info>
6
6
  License: BSD-3-Clause
@@ -13,24 +13,26 @@ Project-URL: twitter, https://twitter.com/brain_globe
13
13
  Classifier: Development Status :: 2 - Pre-Alpha
14
14
  Classifier: Programming Language :: Python
15
15
  Classifier: Programming Language :: Python :: 3
16
- Classifier: Programming Language :: Python :: 3.9
17
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  Classifier: Programming Language :: Python :: 3.10
17
+ Classifier: Programming Language :: Python :: 3.11
18
+ Classifier: Programming Language :: Python :: 3.12
18
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  Classifier: Operating System :: OS Independent
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  Classifier: License :: OSI Approved :: BSD License
20
- Requires-Python: >=3.9.0
21
+ Requires-Python: >=3.10.0
21
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  Description-Content-Type: text/markdown
22
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  License-File: LICENSE
23
- Requires-Dist: brainglobe-atlasapi<3,>=2.0.6
24
- Requires-Dist: brainglobe-heatmap<1,>=0.5.2
24
+ Requires-Dist: brainglobe-atlasapi<3,>=2.0.7
25
+ Requires-Dist: brainglobe-heatmap<1,>=0.5.3
25
26
  Requires-Dist: brainglobe-napari-io<1,>=0.3.4
26
- Requires-Dist: brainglobe-segmentation<2,>=1.2.3
27
+ Requires-Dist: brainglobe-segmentation<2,>=1.2.4
27
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  Requires-Dist: brainglobe-space<2,>=1.0.2
28
- Requires-Dist: brainglobe-utils<1,>=0.5.0
29
- Requires-Dist: brainreg[napari]<2,>=1.0.9
29
+ Requires-Dist: brainglobe-utils<1,>=0.6.0
30
+ Requires-Dist: brainreg[napari]<2,>=1.0.10
30
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  Requires-Dist: brainrender-napari<1,>=0.0.3
31
- Requires-Dist: brainrender<3,>=2.1.9
32
- Requires-Dist: cellfinder[napari]<2,>=1.2.0
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+ Requires-Dist: brainrender<3,>=2.1.10
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+ Requires-Dist: cellfinder[napari]<2,>=1.3.1
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  Requires-Dist: napari[all]
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+ Requires-Dist: brainrender-napari<2,>=0.0.4
34
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  Provides-Extra: dev
35
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  Requires-Dist: pytest; extra == "dev"
36
38
  Requires-Dist: pytest-cov; extra == "dev"
@@ -71,10 +73,8 @@ and to update,
71
73
  pip install brainglobe --update
72
74
  ```
73
75
 
74
- ## Contributing
75
-
76
- **Contributors to BrainGlobe are absolutely encouraged**, whether to fix a bug, develop a new feature, or add a new atlas.
77
- If you would like to contribute, please take a look at our [developer documentation](https://brainglobe.info/developers/index.html).
76
+ ## Seeking help or contributing
77
+ We are always happy to help users of our tools, and welcome any contributions. If you would like to get in contact with us for any reason, please see the [contact page of our website](https://brainglobe.info/contact.html).
78
78
 
79
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  ---
80
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brainglobe-1.3.0/brainglobe.egg-info/requires.txt ADDED
@@ -0,0 +1,23 @@
1
+ brainglobe-atlasapi<3,>=2.0.7
2
+ brainglobe-heatmap<1,>=0.5.3
3
+ brainglobe-napari-io<1,>=0.3.4
4
+ brainglobe-segmentation<2,>=1.2.4
5
+ brainglobe-space<2,>=1.0.2
6
+ brainglobe-utils<1,>=0.6.0
7
+ brainreg[napari]<2,>=1.0.10
8
+ brainrender-napari<1,>=0.0.3
9
+ brainrender<3,>=2.1.10
10
+ cellfinder[napari]<2,>=1.3.1
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+ napari[all]
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+ brainrender-napari<2,>=0.0.4
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+
14
+ [dev]
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+ pytest
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+ pytest-cov
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+ coverage
18
+ tox
19
+ black
20
+ mypy
21
+ pre-commit
22
+ ruff
23
+ setuptools_scm
{brainglobe-1.1.0 → brainglobe-1.3.0}/pyproject.toml RENAMED
@@ -3,7 +3,7 @@ name = "brainglobe"
3
3
  authors = [{ name = "BrainGlobe Developers", email = "hello@brainglobe.info" }]
4
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  description = "Python-based tools for computational neuroanatomy."
5
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  readme = "README.md"
6
- requires-python = ">=3.9.0"
6
+ requires-python = ">=3.10.0"
7
7
  dynamic = ["version"]
8
8
 
9
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  license = { text = "BSD-3-Clause" }
@@ -12,25 +12,26 @@ classifiers = [
12
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  "Development Status :: 2 - Pre-Alpha",
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  "Programming Language :: Python",
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  "Programming Language :: Python :: 3",
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- "Programming Language :: Python :: 3.9",
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  "Programming Language :: Python :: 3.10",
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+ "Programming Language :: Python :: 3.11",
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+ "Programming Language :: Python :: 3.12",
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  "Operating System :: OS Independent",
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  "License :: OSI Approved :: BSD License",
19
20
  ]
20
21
 
21
22
  dependencies = [
22
- "brainglobe-atlasapi>=2.0.6,<3",
23
- "brainglobe-heatmap>=0.5.2,<1",
23
+ "brainglobe-atlasapi>=2.0.7,<3",
24
+ "brainglobe-heatmap>=0.5.3,<1",
24
25
  "brainglobe-napari-io>=0.3.4,<1",
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- "brainglobe-segmentation>=1.2.3,<2",
26
+ "brainglobe-segmentation>=1.2.4,<2",
26
27
  "brainglobe-space>=1.0.2,<2",
27
- "brainglobe-utils>=0.5.0,<1",
28
- "brainreg[napari]>=1.0.9,<2",
28
+ "brainglobe-utils>=0.6.0,<1",
29
+ "brainreg[napari]>=1.0.10,<2",
29
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  "brainrender-napari>=0.0.3,<1",
30
- "brainrender>=2.1.9,<3",
31
- "cellfinder[napari]>=1.2.0,<2",
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+ "brainrender>=2.1.10,<3",
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+ "cellfinder[napari]>=1.3.1,<2",
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  "napari[all]",
33
- # brainglobe-napari [WIP],
34
+ "brainrender-napari>=0.0.4, <2" ,
34
35
  ]
35
36
 
36
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  [project.optional-dependencies]
@@ -69,7 +70,7 @@ exclude = ["tests*"]
69
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  addopts = "--cov=brainglobe"
70
71
 
71
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  [tool.black]
72
- target-version = ['py39', 'py310']
73
+ target-version = ['py310', 'py311', 'py312']
73
74
  skip-string-normalization = false
74
75
  line-length = 79
75
76
 
@@ -93,13 +94,14 @@ fix = true
93
94
  [tool.tox]
94
95
  legacy_tox_ini = """
95
96
  [tox]
96
- envlist = py{39,310}
97
+ envlist = py{39,310,311}
97
98
  isolated_build = True
98
99
 
99
100
  [gh-actions]
100
101
  python =
101
- 3.9: py39
102
102
  3.10: py310
103
+ 3.11: py311
104
+ 3.12: py312
103
105
 
104
106
  [testenv]
105
107
  extras =
brainglobe-1.1.0/brainglobe.egg-info/requires.txt DELETED
@@ -1,22 +0,0 @@
1
- brainglobe-atlasapi<3,>=2.0.6
2
- brainglobe-heatmap<1,>=0.5.2
3
- brainglobe-napari-io<1,>=0.3.4
4
- brainglobe-segmentation<2,>=1.2.3
5
- brainglobe-space<2,>=1.0.2
6
- brainglobe-utils<1,>=0.5.0
7
- brainreg[napari]<2,>=1.0.9
8
- brainrender-napari<1,>=0.0.3
9
- brainrender<3,>=2.1.9
10
- cellfinder[napari]<2,>=1.2.0
11
- napari[all]
12
-
13
- [dev]
14
- pytest
15
- pytest-cov
16
- coverage
17
- tox
18
- black
19
- mypy
20
- pre-commit
21
- ruff
22
- setuptools_scm
{brainglobe-1.1.0 → brainglobe-1.3.0}/.gitignore RENAMED
File without changes
{brainglobe-1.1.0 → brainglobe-1.3.0}/CITATION.cff RENAMED
File without changes
{brainglobe-1.1.0 → brainglobe-1.3.0}/LICENSE RENAMED
File without changes
{brainglobe-1.1.0 → brainglobe-1.3.0}/MANIFEST.in RENAMED
File without changes
{brainglobe-1.1.0 → brainglobe-1.3.0}/setup.cfg RENAMED
File without changes
{brainglobe-1.1.0 → brainglobe-1.3.0}/tests/__init__.py RENAMED
File without changes