brainglobe 1.0.0__tar.gz → 1.0.3__tar.gz

{brainglobe-1.0.0 → brainglobe-1.0.3}/.github/workflows/test_and_deploy.yml

@@ -67,11 +67,6 @@ jobs:
     needs: [build_sdist_wheels]
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/download-artifact@v3
+    - uses: neuroinformatics-unit/actions/upload_pypi@v2
       with:
-        name: artifact
-        path: dist
-    - uses: pypa/gh-action-pypi-publish@v1.5.0
-      with:
-        user: __token__
-        password: ${{ secrets.TWINE_API_KEY }}
+        secret-pypi-key: ${{ secrets.TWINE_API_KEY }}

brainglobe-1.0.3/CITATION.cff

@@ -0,0 +1,30 @@
+# This CITATION.cff file was generated with cffinit.
+# Visit https://bit.ly/cffinit to generate yours today!
+
+cff-version: 1.2.0
+title: BrainGlobe
+message: >-
+  You can use the brainglobe.cite() function to generate
+  citations for the BrainGlobe tools you use in your
+  research.
+type: software
+authors:
+  - given-names: BrainGlobe
+    family-names: Developers
+    affiliation: 'Sainsbury Wellcome Centre, University College London'
+    email: hello@brainglobe.info
+  - given-names: Wiliam Michael
+    family-names: Graham
+    email: william.graham@ucl.ac.uk
+    affiliation: 'Advanced Research Computing, University College London'
+    orcid: 'https://orcid.org/0000-0003-0058-263X'
+repository-code: 'https://github.com/brainglobe/brainglobe-meta'
+url: 'https://brainglobe.info/'
+abstract: >-
+  The BrainGlobe Initiative exists to facilitate the
+  development of interoperable Python-based tools for
+  computational neuroanatomy.
+license: BSD-3-Clause
+citation-sentence: >-
+  'This project makes use of the BrainGlobe tool-suite, https://brainglobe.info/'
+year: 2024

{brainglobe-1.0.0 → brainglobe-1.0.3}/MANIFEST.in

@@ -1,3 +1,4 @@
+include CITATION.cff
 include LICENSE
 include README.md
 

{brainglobe-1.0.0 → brainglobe-1.0.3}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: brainglobe
-Version: 1.0.0
+Version: 1.0.3
 Summary: Python-based tools for computational neuroanatomy.
 Author-email: BrainGlobe Developers <hello@brainglobe.info>
 License: BSD-3-Clause
@@ -20,17 +20,16 @@ Classifier: License :: OSI Approved :: BSD License
 Requires-Python: >=3.9.0
 Description-Content-Type: text/markdown
 License-File: LICENSE
-Requires-Dist: bg-atlasapi<2,>=1.0.2
-Requires-Dist: bg-space<1,>=0.6.0
+Requires-Dist: brainglobe-atlasapi<3,>=2.0.1
 Requires-Dist: brainglobe-heatmap<1,>=0.5.2
-Requires-Dist: brainglobe-napari-io<1,>=0.3.1
-Requires-Dist: brainglobe-segmentation<2,>=1.2.0
-Requires-Dist: brainglobe-utils<1,>=0.3.3
-Requires-Dist: brainreg[napari]<2,>=1.0.2
-Requires-Dist: brainrender-napari<1,>=0.0.2
-Requires-Dist: brainrender<3,>=2.1.3
-Requires-Dist: cellfinder[napari]<2,>=1.1.0
-Requires-Dist: imio<1,>=0.3.0
+Requires-Dist: brainglobe-napari-io<1,>=0.3.4
+Requires-Dist: brainglobe-segmentation<2,>=1.2.3
+Requires-Dist: brainglobe-space<2,>=1.0.0
+Requires-Dist: brainglobe-utils<1,>=0.4.1
+Requires-Dist: brainreg[napari]<2,>=1.0.6
+Requires-Dist: brainrender-napari<1,>=0.0.3
+Requires-Dist: brainrender<3,>=2.1.6
+Requires-Dist: cellfinder[napari]<2,>=1.1.1
 Requires-Dist: napari[all]
 Provides-Extra: dev
 Requires-Dist: pytest; extra == "dev"

{brainglobe-1.0.0 → brainglobe-1.0.3}/brainglobe.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: brainglobe
-Version: 1.0.0
+Version: 1.0.3
 Summary: Python-based tools for computational neuroanatomy.
 Author-email: BrainGlobe Developers <hello@brainglobe.info>
 License: BSD-3-Clause
@@ -20,17 +20,16 @@ Classifier: License :: OSI Approved :: BSD License
 Requires-Python: >=3.9.0
 Description-Content-Type: text/markdown
 License-File: LICENSE
-Requires-Dist: bg-atlasapi<2,>=1.0.2
-Requires-Dist: bg-space<1,>=0.6.0
+Requires-Dist: brainglobe-atlasapi<3,>=2.0.1
 Requires-Dist: brainglobe-heatmap<1,>=0.5.2
-Requires-Dist: brainglobe-napari-io<1,>=0.3.1
-Requires-Dist: brainglobe-segmentation<2,>=1.2.0
-Requires-Dist: brainglobe-utils<1,>=0.3.3
-Requires-Dist: brainreg[napari]<2,>=1.0.2
-Requires-Dist: brainrender-napari<1,>=0.0.2
-Requires-Dist: brainrender<3,>=2.1.3
-Requires-Dist: cellfinder[napari]<2,>=1.1.0
-Requires-Dist: imio<1,>=0.3.0
+Requires-Dist: brainglobe-napari-io<1,>=0.3.4
+Requires-Dist: brainglobe-segmentation<2,>=1.2.3
+Requires-Dist: brainglobe-space<2,>=1.0.0
+Requires-Dist: brainglobe-utils<1,>=0.4.1
+Requires-Dist: brainreg[napari]<2,>=1.0.6
+Requires-Dist: brainrender-napari<1,>=0.0.3
+Requires-Dist: brainrender<3,>=2.1.6
+Requires-Dist: cellfinder[napari]<2,>=1.1.1
 Requires-Dist: napari[all]
 Provides-Extra: dev
 Requires-Dist: pytest; extra == "dev"

{brainglobe-1.0.0 → brainglobe-1.0.3}/brainglobe.egg-info/SOURCES.txt

@@ -1,4 +1,5 @@
 .gitignore
+CITATION.cff
 LICENSE
 MANIFEST.in
 README.md

brainglobe-1.0.3/brainglobe.egg-info/requires.txt

@@ -0,0 +1,22 @@
+brainglobe-atlasapi<3,>=2.0.1
+brainglobe-heatmap<1,>=0.5.2
+brainglobe-napari-io<1,>=0.3.4
+brainglobe-segmentation<2,>=1.2.3
+brainglobe-space<2,>=1.0.0
+brainglobe-utils<1,>=0.4.1
+brainreg[napari]<2,>=1.0.6
+brainrender-napari<1,>=0.0.3
+brainrender<3,>=2.1.6
+cellfinder[napari]<2,>=1.1.1
+napari[all]
+
+[dev]
+pytest
+pytest-cov
+coverage
+tox
+black
+mypy
+pre-commit
+ruff
+setuptools_scm

{brainglobe-1.0.0 → brainglobe-1.0.3}/pyproject.toml

@@ -19,19 +19,17 @@ classifiers = [
 ]
 
 dependencies = [
-  "bg-atlasapi>=1.0.2,<2",
-  "bg-space>=0.6.0,<1",
+  "brainglobe-atlasapi>=2.0.1,<3",
   "brainglobe-heatmap>=0.5.2,<1",
-  "brainglobe-napari-io>=0.3.1,<1",
-  "brainglobe-segmentation>=1.2.0,<2",
-  "brainglobe-utils>=0.3.3,<1",
-  "brainreg[napari]>=1.0.2,<2",
-  "brainrender-napari>=0.0.2,<1",
-  "brainrender>=2.1.3,<3",
-  "cellfinder[napari]>=1.1.0,<2",
-  "imio>=0.3.0,<1",
+  "brainglobe-napari-io>=0.3.4,<1",
+  "brainglobe-segmentation>=1.2.3,<2",
+  "brainglobe-space>=1.0.0,<2",
+  "brainglobe-utils>=0.4.1,<1",
+  "brainreg[napari]>=1.0.6,<2",
+  "brainrender-napari>=0.0.3,<1",
+  "brainrender>=2.1.6,<3",
+  "cellfinder[napari]>=1.1.1,<2",
   "napari[all]",
-  # bg-atlasgen [LOCAL ONLY],
   # brainglobe-napari [WIP],
 ]
 
@@ -71,7 +69,7 @@ exclude = ["tests*"]
 addopts = "--cov=brainglobe"
 
 [tool.black]
-target-version = ['py38', 'py39', 'py310']
+target-version = ['py39', 'py310']
 skip-string-normalization = false
 line-length = 79
 
@@ -95,12 +93,11 @@ fix = true
 [tool.tox]
 legacy_tox_ini = """
 [tox]
-envlist = py{38,39,310}
+envlist = py{39,310}
 isolated_build = True
 
 [gh-actions]
 python =
-    3.8: py38
     3.9: py39
     3.10: py310
 

brainglobe-1.0.0/brainglobe.egg-info/requires.txt

@@ -1,23 +0,0 @@
-bg-atlasapi<2,>=1.0.2
-bg-space<1,>=0.6.0
-brainglobe-heatmap<1,>=0.5.2
-brainglobe-napari-io<1,>=0.3.1
-brainglobe-segmentation<2,>=1.2.0
-brainglobe-utils<1,>=0.3.3
-brainreg[napari]<2,>=1.0.2
-brainrender-napari<1,>=0.0.2
-brainrender<3,>=2.1.3
-cellfinder[napari]<2,>=1.1.0
-imio<1,>=0.3.0
-napari[all]
-
-[dev]
-pytest
-pytest-cov
-coverage
-tox
-black
-mypy
-pre-commit
-ruff
-setuptools_scm