brainglobe 0.2.0__tar.gz → 0.3.1__tar.gz

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Files changed (21) hide show
  1. {brainglobe-0.2.0 → brainglobe-0.3.1}/.github/workflows/test_and_deploy.yml +1 -1
  2. {brainglobe-0.2.0 → brainglobe-0.3.1}/PKG-INFO +32 -5
  3. {brainglobe-0.2.0 → brainglobe-0.3.1}/README.md +1 -1
  4. {brainglobe-0.2.0 → brainglobe-0.3.1}/brainglobe/__init__.py +1 -1
  5. {brainglobe-0.2.0 → brainglobe-0.3.1}/brainglobe.egg-info/PKG-INFO +32 -5
  6. {brainglobe-0.2.0 → brainglobe-0.3.1}/brainglobe.egg-info/requires.txt +2 -3
  7. {brainglobe-0.2.0 → brainglobe-0.3.1}/pyproject.toml +12 -11
  8. {brainglobe-0.2.0 → brainglobe-0.3.1}/tests/test_unit/test_tool_exposure.py +1 -1
  9. {brainglobe-0.2.0 → brainglobe-0.3.1}/.gitignore +0 -0
  10. {brainglobe-0.2.0 → brainglobe-0.3.1}/LICENSE +0 -0
  11. {brainglobe-0.2.0 → brainglobe-0.3.1}/MANIFEST.in +0 -0
  12. {brainglobe-0.2.0 → brainglobe-0.3.1}/brainglobe/_conda_handles.py +0 -0
  13. {brainglobe-0.2.0 → brainglobe-0.3.1}/brainglobe.egg-info/SOURCES.txt +0 -0
  14. {brainglobe-0.2.0 → brainglobe-0.3.1}/brainglobe.egg-info/dependency_links.txt +0 -0
  15. {brainglobe-0.2.0 → brainglobe-0.3.1}/brainglobe.egg-info/top_level.txt +0 -0
  16. {brainglobe-0.2.0 → brainglobe-0.3.1}/setup.cfg +0 -0
  17. {brainglobe-0.2.0 → brainglobe-0.3.1}/tests/__init__.py +0 -0
  18. {brainglobe-0.2.0 → brainglobe-0.3.1}/tests/test_integration/__init__.py +0 -0
  19. {brainglobe-0.2.0 → brainglobe-0.3.1}/tests/test_unit/__init__.py +0 -0
  20. {brainglobe-0.2.0 → brainglobe-0.3.1}/tests/test_unit/test__version__.py +0 -0
  21. {brainglobe-0.2.0 → brainglobe-0.3.1}/tox.ini +0 -0
{brainglobe-0.2.0 → brainglobe-0.3.1}/.github/workflows/test_and_deploy.yml RENAMED
@@ -38,7 +38,7 @@ jobs:
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  strategy:
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  matrix:
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  # Run all supported Python versions on linux
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- python-version: ["3.8", "3.9", "3.10"]
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+ python-version: ["3.9", "3.10"]
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  os: [ubuntu-latest]
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  # Include one windows and macos run
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  include:
{brainglobe-0.2.0 → brainglobe-0.3.1}/PKG-INFO RENAMED
@@ -1,9 +1,15 @@
1
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  Metadata-Version: 2.1
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  Name: brainglobe
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- Version: 0.2.0
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+ Version: 0.3.1
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  Summary: Python-based tools for computational neuroanatomy.
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- Author-email: BrainGlobe <code@adamltyson.com>
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+ Author-email: BrainGlobe Developers <hello@brainglobe.info>
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  License: BSD-3-Clause
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+ Project-URL: homepage, https://brainglobe.info
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+ Project-URL: bug_tracker, https://github.com/brainglobe/brainglobe-meta/issues
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+ Project-URL: documentation, https://docs.brainglobe.info
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+ Project-URL: source_code, https://github.com/brainglobe/brainglobe-meta
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+ Project-URL: user_support, https://forum.image.sc/tag/brainglobe
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+ Project-URL: twitter, https://twitter.com/brain_globe
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  Classifier: Development Status :: 2 - Pre-Alpha
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  Classifier: Programming Language :: Python
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  Classifier: Programming Language :: Python :: 3
@@ -12,10 +18,31 @@ Classifier: Programming Language :: Python :: 3.9
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  Classifier: Programming Language :: Python :: 3.10
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  Classifier: Operating System :: OS Independent
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  Classifier: License :: OSI Approved :: BSD License
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- Requires-Python: >=3.8.0
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+ Requires-Python: >=3.9.0
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  Description-Content-Type: text/markdown
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- Provides-Extra: dev
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  License-File: LICENSE
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+ Requires-Dist: napari[all]
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+ Requires-Dist: bg-space>=0.5.0
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+ Requires-Dist: brainglobe-utils
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+ Requires-Dist: bg-atlasapi>=1.0.0
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+ Requires-Dist: brainreg[napari]>=1.0.0
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+ Requires-Dist: imio
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+ Requires-Dist: cellfinder-core>=0.3
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+ Requires-Dist: morphapi>=0.1.3.0
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+ Requires-Dist: brainglobe-napari-io
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+ Requires-Dist: brainglobe-segmentation>=1.0.0
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+ Requires-Dist: cellfinder-napari
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+ Requires-Dist: cellfinder
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+ Provides-Extra: dev
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+ Requires-Dist: pytest; extra == "dev"
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+ Requires-Dist: pytest-cov; extra == "dev"
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+ Requires-Dist: coverage; extra == "dev"
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+ Requires-Dist: tox; extra == "dev"
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+ Requires-Dist: black; extra == "dev"
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+ Requires-Dist: mypy; extra == "dev"
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+ Requires-Dist: pre-commit; extra == "dev"
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+ Requires-Dist: ruff; extra == "dev"
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+ Requires-Dist: setuptools_scm; extra == "dev"
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  [![PyPI version](https://badge.fury.io/py/brainglobe.svg)](https://badge.fury.io/py/brainglobe)
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  [![Website](https://img.shields.io/website?up_message=online&url=https%3A%2F%2Fbrainglobe.info)](https://brainglobe.info)
@@ -55,7 +82,7 @@ Currently included packages, and whether they come with the `pip` and `conda-for
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  | BrainGlobe Atlas API | &#x2611; | &#x2611; | `bg_atlasapi` | [Site](https://brainglobe.info/documentation/bg-atlasapi/index.html) |
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  | `bg-space` | &#x2611; | &#x2611; | `bg-space` | [Site](https://brainglobe.info/documentation/bg-space/index.html) |
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  | `brainreg` | &#x2611; | &#x2611; | `brainreg` | [Site](https://brainglobe.info/documentation/brainreg/index.html) |
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- | `brainreg-segment` | &#x2611; | &#x2611; | `brainreg_segment` | [Site](https://brainglobe.info/documentation/brainreg-segment/index.html) |
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+ | `brainglobe-segmentation` | &#x2611; | &#x2611; | `brainglobe_segmentation` | [Site](https://brainglobe.info/documentation/brainglobe-segmentation/index.html) |
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  | `brainrender` | | | | [Site](https://brainglobe.info/documentation/brainrender/index.html) |
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  | `cellfinder` | &#x2611; | Pending | `cellfinder_core` | [Site](https://brainglobe.info/documentation/cellfinder/index.html) |
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  | `morphapi` | &#x2611; | Pending | `morphapi` | [Site](https://brainglobe.info/documentation/morphapi/index.html) |
{brainglobe-0.2.0 → brainglobe-0.3.1}/README.md RENAMED
@@ -36,7 +36,7 @@ Currently included packages, and whether they come with the `pip` and `conda-for
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  | BrainGlobe Atlas API | &#x2611; | &#x2611; | `bg_atlasapi` | [Site](https://brainglobe.info/documentation/bg-atlasapi/index.html) |
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  | `bg-space` | &#x2611; | &#x2611; | `bg-space` | [Site](https://brainglobe.info/documentation/bg-space/index.html) |
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  | `brainreg` | &#x2611; | &#x2611; | `brainreg` | [Site](https://brainglobe.info/documentation/brainreg/index.html) |
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- | `brainreg-segment` | &#x2611; | &#x2611; | `brainreg_segment` | [Site](https://brainglobe.info/documentation/brainreg-segment/index.html) |
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+ | `brainglobe-segmentation` | &#x2611; | &#x2611; | `brainglobe_segmentation` | [Site](https://brainglobe.info/documentation/brainglobe-segmentation/index.html) |
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  | `brainrender` | | | | [Site](https://brainglobe.info/documentation/brainrender/index.html) |
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  | `cellfinder` | &#x2611; | Pending | `cellfinder_core` | [Site](https://brainglobe.info/documentation/cellfinder/index.html) |
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  | `morphapi` | &#x2611; | Pending | `morphapi` | [Site](https://brainglobe.info/documentation/morphapi/index.html) |
{brainglobe-0.2.0 → brainglobe-0.3.1}/brainglobe/__init__.py RENAMED
@@ -12,7 +12,7 @@ except PackageNotFoundError:
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  import bg_atlasapi
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  import bg_space
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  import brainreg
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- import brainreg_segment
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+ import brainglobe_segmentation
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  # Expose tools that may not be present
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  # if a conda install was performed
{brainglobe-0.2.0 → brainglobe-0.3.1}/brainglobe.egg-info/PKG-INFO RENAMED
@@ -1,9 +1,15 @@
1
1
  Metadata-Version: 2.1
2
2
  Name: brainglobe
3
- Version: 0.2.0
3
+ Version: 0.3.1
4
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  Summary: Python-based tools for computational neuroanatomy.
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- Author-email: BrainGlobe <code@adamltyson.com>
5
+ Author-email: BrainGlobe Developers <hello@brainglobe.info>
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  License: BSD-3-Clause
7
+ Project-URL: homepage, https://brainglobe.info
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+ Project-URL: bug_tracker, https://github.com/brainglobe/brainglobe-meta/issues
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+ Project-URL: documentation, https://docs.brainglobe.info
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+ Project-URL: source_code, https://github.com/brainglobe/brainglobe-meta
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+ Project-URL: user_support, https://forum.image.sc/tag/brainglobe
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+ Project-URL: twitter, https://twitter.com/brain_globe
7
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  Classifier: Development Status :: 2 - Pre-Alpha
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  Classifier: Programming Language :: Python
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  Classifier: Programming Language :: Python :: 3
@@ -12,10 +18,31 @@ Classifier: Programming Language :: Python :: 3.9
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  Classifier: Programming Language :: Python :: 3.10
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  Classifier: Operating System :: OS Independent
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  Classifier: License :: OSI Approved :: BSD License
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- Requires-Python: >=3.8.0
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+ Requires-Python: >=3.9.0
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  Description-Content-Type: text/markdown
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- Provides-Extra: dev
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  License-File: LICENSE
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+ Requires-Dist: napari[all]
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+ Requires-Dist: bg-space>=0.5.0
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+ Requires-Dist: brainglobe-utils
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+ Requires-Dist: bg-atlasapi>=1.0.0
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+ Requires-Dist: brainreg[napari]>=1.0.0
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+ Requires-Dist: imio
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+ Requires-Dist: cellfinder-core>=0.3
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+ Requires-Dist: morphapi>=0.1.3.0
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+ Requires-Dist: brainglobe-napari-io
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+ Requires-Dist: brainglobe-segmentation>=1.0.0
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+ Requires-Dist: cellfinder-napari
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+ Requires-Dist: cellfinder
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+ Provides-Extra: dev
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+ Requires-Dist: pytest; extra == "dev"
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+ Requires-Dist: pytest-cov; extra == "dev"
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+ Requires-Dist: coverage; extra == "dev"
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+ Requires-Dist: tox; extra == "dev"
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+ Requires-Dist: black; extra == "dev"
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+ Requires-Dist: mypy; extra == "dev"
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+ Requires-Dist: pre-commit; extra == "dev"
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+ Requires-Dist: ruff; extra == "dev"
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+ Requires-Dist: setuptools_scm; extra == "dev"
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  [![PyPI version](https://badge.fury.io/py/brainglobe.svg)](https://badge.fury.io/py/brainglobe)
21
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  [![Website](https://img.shields.io/website?up_message=online&url=https%3A%2F%2Fbrainglobe.info)](https://brainglobe.info)
@@ -55,7 +82,7 @@ Currently included packages, and whether they come with the `pip` and `conda-for
55
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  | BrainGlobe Atlas API | &#x2611; | &#x2611; | `bg_atlasapi` | [Site](https://brainglobe.info/documentation/bg-atlasapi/index.html) |
56
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  | `bg-space` | &#x2611; | &#x2611; | `bg-space` | [Site](https://brainglobe.info/documentation/bg-space/index.html) |
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  | `brainreg` | &#x2611; | &#x2611; | `brainreg` | [Site](https://brainglobe.info/documentation/brainreg/index.html) |
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- | `brainreg-segment` | &#x2611; | &#x2611; | `brainreg_segment` | [Site](https://brainglobe.info/documentation/brainreg-segment/index.html) |
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+ | `brainglobe-segmentation` | &#x2611; | &#x2611; | `brainglobe_segmentation` | [Site](https://brainglobe.info/documentation/brainglobe-segmentation/index.html) |
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  | `brainrender` | | | | [Site](https://brainglobe.info/documentation/brainrender/index.html) |
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  | `cellfinder` | &#x2611; | Pending | `cellfinder_core` | [Site](https://brainglobe.info/documentation/cellfinder/index.html) |
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  | `morphapi` | &#x2611; | Pending | `morphapi` | [Site](https://brainglobe.info/documentation/morphapi/index.html) |
{brainglobe-0.2.0 → brainglobe-0.3.1}/brainglobe.egg-info/requires.txt RENAMED
@@ -2,14 +2,13 @@ napari[all]
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  bg-space>=0.5.0
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  brainglobe-utils
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  bg-atlasapi>=1.0.0
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- brainreg
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+ brainreg[napari]>=1.0.0
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  imio
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  cellfinder-core>=0.3
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  morphapi>=0.1.3.0
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  brainglobe-napari-io
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- brainreg-segment>=0.0.2
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+ brainglobe-segmentation>=1.0.0
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  cellfinder-napari
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- brainreg-napari
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  cellfinder
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  [dev]
{brainglobe-0.2.0 → brainglobe-0.3.1}/pyproject.toml RENAMED
@@ -1,9 +1,9 @@
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  [project]
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  name = "brainglobe"
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- authors = [{ name = "BrainGlobe", email = "code@adamltyson.com" }]
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+ authors = [{ name = "BrainGlobe Developers", email = "hello@brainglobe.info" }]
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  description = "Python-based tools for computational neuroanatomy."
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  readme = "README.md"
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- requires-python = ">=3.8.0"
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+ requires-python = ">=3.9.0"
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  dynamic = ["version"]
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  license = { text = "BSD-3-Clause" }
@@ -24,16 +24,15 @@ dependencies = [
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  "bg-space>=0.5.0",
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  "brainglobe-utils",
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  "bg-atlasapi>=1.0.0",
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- "brainreg",
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+ "brainreg[napari]>=1.0.0",
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  # brainglobe-napari [WIP],
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  "imio",
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  "cellfinder-core>=0.3",
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  "morphapi>=0.1.3.0",
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  "brainglobe-napari-io",
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  # bg-atlasgen [LOCAL ONLY],
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- "brainreg-segment>=0.0.2",
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+ "brainglobe-segmentation>=1.0.0",
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  "cellfinder-napari",
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- "brainreg-napari",
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  "cellfinder",
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  ]
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@@ -50,6 +49,14 @@ dev = [
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  "setuptools_scm",
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  ]
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+ [project.urls]
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+ homepage = "https://brainglobe.info"
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+ bug_tracker = "https://github.com/brainglobe/brainglobe-meta/issues"
55
+ documentation = "https://docs.brainglobe.info"
56
+ source_code = "https://github.com/brainglobe/brainglobe-meta"
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+ user_support = "https://forum.image.sc/tag/brainglobe"
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+ twitter = "https://twitter.com/brain_globe"
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+
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  [build-system]
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  requires = ["setuptools>=45", "wheel", "setuptools_scm[toml]>=6.2"]
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  build-backend = "setuptools.build_meta"
@@ -85,9 +92,3 @@ line-length = 79
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  exclude = ["__init__.py", "build", ".eggs"]
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  select = ["I", "E", "F"]
87
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  fix = true
88
-
89
- [tool.cibuildwheel]
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- build = "cp38-* cp39-* cp310-*"
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-
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- [tool.cibuildwheel.macos]
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- archs = ["x86_64", "arm64"]
{brainglobe-0.2.0 → brainglobe-0.3.1}/tests/test_unit/test_tool_exposure.py RENAMED
@@ -10,7 +10,7 @@ EXPOSED_TOOLS = [
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  "bg_atlasapi",
11
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  "bg_space",
12
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  "brainreg",
13
- "brainreg_segment",
13
+ "brainglobe_segmentation",
14
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  "cellfinder_core",
15
15
  ]
16
16
  OPTIONAL_TOOLS = ["morphapi", "cellfinder"]
{brainglobe-0.2.0 → brainglobe-0.3.1}/.gitignore RENAMED
File without changes
{brainglobe-0.2.0 → brainglobe-0.3.1}/LICENSE RENAMED
File without changes
{brainglobe-0.2.0 → brainglobe-0.3.1}/MANIFEST.in RENAMED
File without changes
{brainglobe-0.2.0 → brainglobe-0.3.1}/setup.cfg RENAMED
File without changes
{brainglobe-0.2.0 → brainglobe-0.3.1}/tests/__init__.py RENAMED
File without changes
{brainglobe-0.2.0 → brainglobe-0.3.1}/tox.ini RENAMED
File without changes