brainfc 0.3.0__tar.gz → 0.4.0__tar.gz

{brainfc-0.3.0 → brainfc-0.4.0}/.gitattributes

@@ -2,6 +2,7 @@
 *.py text eol=lf
 *.md text eol=lf
 *.json text eol=lf
+*.tsv text eol=lf
 *.yml text eol=lf
 *.yaml text eol=lf
 *.ts text eol=lf
@@ -13,4 +14,5 @@
 *.txt text eol=lf
 docs/assets/ARCHIFY-LICENSE text eol=lf
 *.png binary
+*.nii.gz binary
 *.cmd text eol=crlf

{brainfc-0.3.0 → brainfc-0.4.0}/.github/workflows/ci.yml

@@ -35,12 +35,18 @@ jobs:
         with:
           node-version: '22'
           cache: npm
-          cache-dependency-path: frontend/package-lock.json
+          cache-dependency-path: |
+            frontend/package-lock.json
+            network-frontend/package-lock.json
       - run: python -m pip install -e ".[dev]"
       - run: npm ci
         working-directory: frontend
       - run: npm run check && npm run build
         working-directory: frontend
+      - run: npm ci
+        working-directory: network-frontend
+      - run: npm run check && npm test && npm run build
+        working-directory: network-frontend
       - run: python scripts/generate_reference.py --check
       - run: python scripts/check_release.py
       - run: python -m build

{brainfc-0.3.0 → brainfc-0.4.0}/.gitignore

@@ -8,6 +8,7 @@ __pycache__/
 .pytest_cache/
 .ruff_cache/
 frontend/node_modules/
+node_modules/
 *.log
 .venv*/
 .env
@@ -16,6 +17,7 @@ frontend/node_modules/
 license.txt
 *.nii
 *.nii.gz
+!src/brainfc/data/rest01/reference_mask.nii.gz
 *.dcm
 *.npy
 *.npz

{brainfc-0.3.0 → brainfc-0.4.0}/CHANGELOG.md

@@ -1,12 +1,25 @@
 # 更新记录
 
+## 0.4.0 — 2026-09-12
+
+- 合入 Hyper-Brain 的普通图、原生超图、结构指标、组间统计、图谱管理和完整网络工作台。
+- 新增 `brainfc.network`、`Connectome.to_network()` / `analyze_network()` 和 `brainfc network`。
+- `brainfc serve` 同时提供提取和 `/networks/` 网络分析；提取结果自动携带矩阵、ROI 顺序、坐标和处理记录，免重新上传。
+- 保留 `hicbrain` 导入与命令兼容层；升级已有环境前请移除旧 `hic-brain` distribution，避免共享文件冲突。
+- 网页默认运行真实 rest01 样例；统一工大蓝配色，精简安装与上手说明。
+
+- 新增经授权、去除直接身份标识的静息态样例 `rest01`，可通过 Python 或 `brainfc demo --kind rest01` 运行。
+- 记录像素文字、文件头、公开文件与发行物的隐私核查范围；原始 DICOM、个体 T1/BOLD 和本地影像压缩包不公开。
+- 提供有对照实验证据的 UIH TE/读出参数核验脚本，保留源文件并拒绝未知冲突。
+- README 矩阵和同步脑网络图改用真实 rest01 结果；标注原始脑区顺序、网络边界与固定色标，并提供绘图脚本。
+
 ## 0.3.0 — 2026-09-12
 
 - 正式采用分发名 `brainfc`、Python 导入名 `brainfc`、命令行 `brainfc`。
 - 默认安装包含科学计算和本地网页，无需额外选择 `[web]`。
 - 原有函数、处理顺序与结果契约保持不变；完整 API 和示例同步新名称。
 - 源码单独存放于新的 `brainfc` 目录，旧发行包及结果保留。
-- 本地构建验证，尚未上传 PyPI。
+- 发布到 PyPI。
 
 ## 0.2.1 — 2026-09-12
 

{brainfc-0.3.0 → brainfc-0.4.0}/CITATION.cff

@@ -6,7 +6,7 @@ repository-code: "https://github.com/hanxiangmin/brainfc"
 abstract: "Local single-run fMRI to ROI time series and signed functional connectivity, with a Python API, command line, and local graphical interface."
 authors:
   - name: "BrainFC contributors"
-version: 0.3.0
+version: 0.4.0
 date-released: 2026-09-12
 license: Apache-2.0
 keywords:

{brainfc-0.3.0 → brainfc-0.4.0}/CONTRIBUTING.md

@@ -11,6 +11,9 @@ python -m pip install -e ".[dev]"
 cd frontend
 npm ci
 cd ..
+cd network-frontend
+npm ci
+cd ..
 ```
 
 ## 提交前验证
@@ -25,9 +28,9 @@ python -m build
 python -m twine check dist/*.whl dist/*.tar.gz
 ```
 
-前端改动运行 `npm run check`、`npm run build`；构建后的 JS/CSS 与第三方许可证随包分发，需要一起更新。`npm run test:ui` 会启动临时本地服务并使用 Playwright，首次需要 `npx playwright install chromium`，也可通过 `FMRI_TEST_CHROMIUM` 指定已有浏览器。
+前端改动在 `frontend` 和 `network-frontend` 分别运行 `npm run check`、`npm run build`；后者还运行 `npm test`。构建后的 JS/CSS 与第三方许可证随包分发，需要一起更新。在 `frontend` 运行 `npm run test:ui` 会启动临时本地服务，用 Playwright 验证提取、自动传递、网络界面和导出；首次需要 `npx playwright install chromium`，也可通过 `FMRI_TEST_CHROMIUM` 指定已有浏览器。
 
-函数 docstring 采用 NumPy 风格；更改函数/默认值后重新生成参考和 OpenAPI。`Config` 是科学参数的唯一默认来源。版本改 `src/brainfc/_version.py`，并同步 frontend/package.json 与 package-lock.json；Vite 从该文件读显示版本。
+函数 docstring 采用 NumPy 风格；更改函数/默认值后重新生成参考和 OpenAPI。`Config` 是提取参数默认来源，`network.AnalysisConfig` 是网络分析默认来源。版本改 `src/brainfc/_version.py`，并同步两套前端的 package.json、package-lock.json 与 CITATION.cff。算法实现只放在 `brainfc.network`；`hicbrain` 仅保留薄兼容层。
 
 ## 数值与数据约定
 

brainfc-0.4.0/NOTICE

@@ -0,0 +1,28 @@
+BrainFC
+Copyright 2026 BrainFC contributors
+
+The 3D viewer in frontend/src/vendor is derived from Hyper-Brain 0.3.0
+https://github.com/hanxiangmin/Hyper-Brain (Apache License 2.0).
+Adapted 2026-09-12. Changes include eight camera directions, coordinate bounds,
+smoothed display surfaces, translucent materials, foreground hover labels,
+and synchronized edge selection and eight-view export.
+Hyper-Brain's graph, native hypergraph, atlas, statistics and local analysis
+workbench are integrated in src/brainfc/network and network-frontend as of
+BrainFC 0.4.0. The original Apache-2.0 license is retained. See
+docs/network/upstream.json for the exact upstream commit and source-file list.
+The hicbrain namespace is a compatibility alias to this single implementation.
+React and Three.js are distributed under their MIT licenses. Their complete
+license texts are included with the bundled frontend in THIRD_PARTY_NOTICES.txt.
+Atlas downloads retain their original providers' licenses and citations.
+The reviewed rest01 example includes ROI signals, confounds and a binary brain
+mask; its direct-identifier review and distribution scope are documented in
+docs/privacy-review.md. Raw DICOM and individual T1/BOLD intensity images are excluded.
+The integrated network client retains its full dependency/WASM/font notices in
+src/brainfc/network/web/static/THIRD_PARTY_NOTICES.txt.
+
+The standalone diagram viewer in docs/assets/processing.html is generated with
+archify skill 2.16 (MIT), https://github.com/tt-a1i/archify.
+The accompanying license is in docs/assets/ARCHIFY-LICENSE.
+The README hero is AI-generated conceptual product artwork; the separately
+identified README application previews use the reviewed rest01 signals and are
+actual renders. Older synthetic gallery examples remain explicitly identified.

{brainfc-0.3.0 → brainfc-0.4.0}/PKG-INFO

@@ -1,7 +1,7 @@
 Metadata-Version: 2.5
 Name: brainfc
-Version: 0.3.0
-Summary: Local fMRI to functional connectivity: Python API, offline GUI and eight-view brain networks
+Version: 0.4.0
+Summary: Local fMRI connectivity, brain graphs and native hypergraphs with a Python API and offline GUI
 Project-URL: Homepage, https://github.com/hanxiangmin/brainfc
 Project-URL: Source, https://github.com/hanxiangmin/brainfc
 Project-URL: Issues, https://github.com/hanxiangmin/brainfc/issues
@@ -10,6 +10,7 @@ Author: BrainFC contributors
 License-Expression: Apache-2.0
 License-File: LICENSE
 License-File: NOTICE
+License-File: src/brainfc/network/web/static/THIRD_PARTY_NOTICES.txt
 License-File: src/brainfc/web/static/THIRD_PARTY_NOTICES.txt
 Keywords: bids,connectome,fmri,functional-connectivity,neuroimaging
 Classifier: Development Status :: 3 - Alpha
@@ -22,21 +23,27 @@ Classifier: Programming Language :: Python :: 3.12
 Classifier: Topic :: Scientific/Engineering :: Medical Science Apps.
 Requires-Python: >=3.11
 Requires-Dist: fastapi>=0.115
+Requires-Dist: h5py>=3.10
 Requires-Dist: matplotlib>=3.8
+Requires-Dist: networkx>=3.2
 Requires-Dist: nibabel>=5.2
 Requires-Dist: nilearn<0.15,>=0.14
 Requires-Dist: numpy>=1.26
 Requires-Dist: pandas>=2.1
+Requires-Dist: platformdirs>=4
 Requires-Dist: python-multipart>=0.0.20
 Requires-Dist: scikit-image>=0.23
 Requires-Dist: scikit-learn>=1.4
 Requires-Dist: scipy>=1.12
+Requires-Dist: statsmodels>=0.14
 Requires-Dist: uvicorn>=0.30
+Requires-Dist: xgi>=0.9
 Provides-Extra: dev
 Requires-Dist: build>=1.2; extra == 'dev'
 Requires-Dist: hatchling>=1.27; extra == 'dev'
 Requires-Dist: httpx>=0.27; extra == 'dev'
 Requires-Dist: markdown>=3.6; extra == 'dev'
+Requires-Dist: pydicom>=3; extra == 'dev'
 Requires-Dist: pytest>=8; extra == 'dev'
 Requires-Dist: pyyaml>=6; extra == 'dev'
 Requires-Dist: ruff>=0.9; extra == 'dev'
@@ -49,16 +56,16 @@ Description-Content-Type: text/markdown
 
 **fMRI → ROI time series → functional connectivity → matrix, eight-view and interactive 3D reports.**
 
-BrainFC is a Python library with a command-line interface and a local graphical interface. Both interfaces use the same processing core. The default installation includes the GUI and an offline API manual. Python 3.11 or newer is required; ordinary users do not need Node.js.
+Functional connectivity, brain graphs and native hypergraphs in one Python package, with a local GUI and complete API. Requires Python 3.11+.
 
 ## Install and launch
 
 ```shell
-pip install brainfc
+pip install -U brainfc
 brainfc serve
 ```
 
-The interface opens at `http://127.0.0.1:8766`. Choose the built-in demo to generate synthetic NIfTI inputs and a complete report without downloading participant data. The offline manual is available at `/reference/` and the HTTP API schema at `/docs`.
+Choose **打开真实样例** to try the bundled rest01 example. No files or parameters to supply.
 
 ## Python API
 
@@ -95,3 +102,15 @@ Raw DICOM/BIDS spatial preprocessing requires external dcm2niix/fMRIPrep. BrainF
 - [Source code and issues](https://github.com/hanxiangmin/brainfc)
 
 Licensed under Apache-2.0. The 3D viewer is adapted from Hyper-Brain; BrainFC runs independently. Dataset and atlas licenses remain with their original providers.
+
+## Network analysis
+
+Choose **进入网络分析** after extraction to explore graphs, native hypergraphs and network metrics. The matrix and ROI mapping transfer automatically.
+
+```python
+from brainfc.network import AnalysisConfig
+
+network = result.analyze_network(AnalysisConfig(k=5))
+```
+
+[Network guide](https://github.com/hanxiangmin/brainfc/blob/main/docs/network-analysis.md) · [Compatibility guide](https://github.com/hanxiangmin/brainfc/blob/main/docs/hyper-brain-migration.md)

{brainfc-0.3.0 → brainfc-0.4.0}/PYPI.md

@@ -4,16 +4,16 @@
 
 **fMRI → ROI time series → functional connectivity → matrix, eight-view and interactive 3D reports.**
 
-BrainFC is a Python library with a command-line interface and a local graphical interface. Both interfaces use the same processing core. The default installation includes the GUI and an offline API manual. Python 3.11 or newer is required; ordinary users do not need Node.js.
+Functional connectivity, brain graphs and native hypergraphs in one Python package, with a local GUI and complete API. Requires Python 3.11+.
 
 ## Install and launch
 
 ```shell
-pip install brainfc
+pip install -U brainfc
 brainfc serve
 ```
 
-The interface opens at `http://127.0.0.1:8766`. Choose the built-in demo to generate synthetic NIfTI inputs and a complete report without downloading participant data. The offline manual is available at `/reference/` and the HTTP API schema at `/docs`.
+Choose **打开真实样例** to try the bundled rest01 example. No files or parameters to supply.
 
 ## Python API
 
@@ -50,3 +50,15 @@ Raw DICOM/BIDS spatial preprocessing requires external dcm2niix/fMRIPrep. BrainF
 - [Source code and issues](https://github.com/hanxiangmin/brainfc)
 
 Licensed under Apache-2.0. The 3D viewer is adapted from Hyper-Brain; BrainFC runs independently. Dataset and atlas licenses remain with their original providers.
+
+## Network analysis
+
+Choose **进入网络分析** after extraction to explore graphs, native hypergraphs and network metrics. The matrix and ROI mapping transfer automatically.
+
+```python
+from brainfc.network import AnalysisConfig
+
+network = result.analyze_network(AnalysisConfig(k=5))
+```
+
+[Network guide](https://github.com/hanxiangmin/brainfc/blob/main/docs/network-analysis.md) · [Compatibility guide](https://github.com/hanxiangmin/brainfc/blob/main/docs/hyper-brain-migration.md)

{brainfc-0.3.0 → brainfc-0.4.0}/README.en.md

@@ -6,28 +6,14 @@
 
 ## Install
 
-Python **3.11+**. The default installation includes the local GUI and offline manual.
+Requires **Python 3.11+**.
 
 ```bash
-pip install brainfc
+pip install -U brainfc
 brainfc serve
 ```
 
-Open `http://127.0.0.1:8766` and choose the built-in demo to try the pipeline with synthetic signals. No participant download or Node.js installation is needed. The current GUI and full reference manual are in Chinese; Python API docstrings are in English.
-
-<details>
-<summary>Install from source / run a command-line demo</summary>
-
-```bash
- git clone https://github.com/hanxiangmin/brainfc.git
- cd brainfc
- pip install .
- brainfc demo --output demo-001
-```
-
-Use the source installation for development or a version not yet uploaded to PyPI. The local manual is at `/reference/`; the HTTP schema is at `/docs`.
-
-</details>
+Choose **打开真实样例** in the browser to try the bundled real example. No files or parameters to supply. The GUI is in Chinese; Python API docstrings are in English.
 
 ## Use
 
@@ -87,6 +73,26 @@ result.save("results/sub-01")
 
 [Runnable example](examples/quickstart.py) · [Batch example](examples/batch_derivatives.py) · [Python guide](docs/python-api.md) · [Complete API](docs/api-reference.md) · [CLI](docs/cli-reference.md) · [HTTP API](docs/http-api.md)
 
+## Graphs and native hypergraphs
+
+Continue with the extracted `result`:
+
+```python
+from brainfc.network import AnalysisConfig
+from brainfc.network.export import export_result
+
+# result is the Connectome returned by extract_connectome above.
+network = result.analyze_network(AnalysisConfig(
+    graph_method="density", density=0.1,
+    hypergraph_method="multiscale", hypergraph_ks=[5, 10],
+))
+export_result(network, "network-result.zip")
+```
+
+Choose **进入网络分析** after extraction. The matrix, ROI order, coordinates and processing records transfer automatically.
+
+[Network guide](docs/network-analysis.md) · [Runnable example](examples/network_analysis.py)
+
 ## Features
 
 | Capability | What it provides |
@@ -105,7 +111,7 @@ result.save("results/sub-01")
 <tr><td><a href="docs/assets/matrix.png"><img src="docs/assets/matrix.png" alt="Full Schaefer-100 matrix"></a></td><td><a href="docs/assets/eight-views.png"><img src="docs/assets/eight-views.png" alt="Eight projections of the same displayed connections"></a></td></tr>
 </table>
 
-These outputs use the **Schaefer 100 atlas, a reference brain, and synthetic fMRI signals**, not patient findings. The header is conceptual artwork. Display thresholds never change the full numerical matrix. Without an anatomical reference, the display surface is an atlas-coverage envelope.
+These results use the [de-identified rest01 example](docs/real-example.md): 100 ROIs and 145 retained frames. The matrix preserves complete Pearson correlations; 3D and eight-view displays share the selected edges. The header is conceptual artwork. [Processing and QC](docs/real-example.md) · [Privacy review](docs/privacy-review.md)
 
 ## Processing workflow
 

{brainfc-0.3.0 → brainfc-0.4.0}/README.md

@@ -7,34 +7,20 @@
   <a href="LICENSE"><img src="https://img.shields.io/badge/License-Apache--2.0-c18a49" alt="Apache-2.0"></a>
 </p>
 
-<p align="center"><b>把脑影像变成可计算、可检查、可交互的功能连接。</b><br>一个 Python 库，同时提供本地图形界面、命令行与完整 API。</p>
+<p align="center"><b>把脑影像变成可计算、可检查、可交互的功能连接。</b><br>一个 Python 库，贯通功能连接、普通图、原生超图与网络统计；提供本地图形界面、命令行与完整 API。</p>
 
 <p align="center"><b>中文</b> · <a href="README.en.md">English</a> · <a href="docs/index.md">使用文档</a> · <a href="docs/api-reference.md">全部 API</a> · <a href="docs/datasets.md">数据下载指南</a></p>
 
 ## 安装
 
-需要 **Python 3.11+**。一次安装即包含计算核心、网页界面和离线手册。
+需要 **Python 3.11+**。
 
 ```bash
-pip install brainfc
+pip install -U brainfc
 brainfc serve
 ```
 
-浏览器打开 `http://127.0.0.1:8766`，点击 **试用演示** 即可体验完整流程。演示使用合成信号，不需要准备数据；日常使用不需要 Node.js。
-
-<details>
-<summary>从 GitHub 源码安装 / 命令行演示</summary>
-
-```bash
-git clone https://github.com/hanxiangmin/brainfc.git
-cd brainfc
-pip install .
-brainfc demo --output demo-001
-```
-
-源码安装适用于开发版，以及尚未上传到 PyPI 的版本。离线手册位于本地服务的 `/reference/`，HTTP 接口说明位于 `/docs`。更多环境与批处理说明见 [快速上手](docs/quickstart.md)。
-
-</details>
+启动后点击 **打开真实样例** 即可体验，无需准备数据或填写参数。
 
 ## 使用
 
@@ -42,7 +28,7 @@ brainfc demo --output demo-001
 
 **选择数据 → 确认方案 → 开始处理。**
 
-界面识别文件类型，读取可用的 TR、空间和配套文件；只有无法确定的信息才需要补充。高级设置默认收起，后续步骤依次解锁。可选 ABIDE、ADNI、ADHD-200、MDD、PPMI 的资料预设，扫描元数据优先，参数仍需确认。
+上传自己的数据，界面会自动读取文件信息，提示需要确认的参数。
 
 ### 1. 已有脑区时间序列
 
@@ -84,7 +70,7 @@ result = extract_connectome(
 )
 ```
 
-影像须已配准到声明的空间；图谱重采样不会代替配准。默认去趋势、标准化，不启用频带滤波或 FD 阈值删帧；需要时按上游处理记录设置。详细 [处理方法](docs/processing.md) 和 [参数默认值](docs/python-api.md#5-参数一览) 可逐项查阅。
+影像须已配准；去噪参数按上游处理记录设置。详见[处理方法](docs/processing.md)与[参数默认值](docs/python-api.md#5-参数一览)。
 
 ### 3. 可视化与导出
 
@@ -101,10 +87,29 @@ original_frames = result.sample_indices
 quality = result.qc
 ```
 
-`save()` 导出矩阵、时序、脑区与帧号、质量记录、处理来源、图片和离线交互报告；目标目录须为新目录。三维和八视图需要完整 ROI 坐标；自定义坐标须声明空间。
+`save()` 保存完整结果和离线报告，目标目录须不存在。三维和八视图需要脑区坐标与空间信息。
 
 [可直接运行的完整示例](examples/quickstart.py) · [批处理示例](examples/batch_derivatives.py) · [Python 使用指南](docs/python-api.md) · [CLI](docs/cli-reference.md) · [HTTP API](docs/http-api.md)
 
+### 4. 继续构建图与原生超图
+
+接上文的 `result`：
+
+```python
+from brainfc.network import AnalysisConfig
+from brainfc.network.export import export_result
+
+network = result.analyze_network(AnalysisConfig(
+    graph_method="density", density=0.1,
+    hypergraph_method="multiscale", hypergraph_ks=[5, 10],
+))
+export_result(network, "network-result.zip")
+```
+
+界面中点击 **进入网络分析**，矩阵、坐标和处理记录自动带入。
+
+[网络分析指南](docs/network-analysis.md) · [可运行示例](examples/network_analysis.py)
+
 ## 关键功能
 
 | 功能 | 可以做什么 |
@@ -114,6 +119,8 @@ quality = result.qc
 | **引导操作** | 按数据类别选择处理路径，自动读取可确认的元数据；数据集预设附官方来源。 |
 | **同步探索** | 矩阵定位脑区；三维与八视图共享阈值、连接上限及脑区/连接选择；前方脑区悬停名称。 |
 | **可追溯导出** | 原始帧号、ROI 顺序、参数、质量记录、软件版本与输入 SHA-256；保留完整正负连接。 |
+| **图与原生超图** | 有符号图、密度/阈值/kNN/生成森林；FC-profile、多尺度、模板与自定义超边，保留原始 ID 和完整成员。 |
+| **网络指标与统计** | 正连接路径指标、原生关联矩阵、独立被试两组比较、协变量 OLS/HC3 和 BH-FDR。 |
 | **本地运行** | Python、CLI、网页共用核心；数据在本机处理，报告可离线打开。 |
 
 ### 实际界面
@@ -125,15 +132,15 @@ quality = result.qc
 <tr><td><a href="docs/assets/matrix.png"><img src="docs/assets/matrix.png" alt="Schaefer 100 脑区完整相关矩阵"></a></td><td><a href="docs/assets/eight-views.png"><img src="docs/assets/eight-views.png" alt="同一组连接在八个解剖视角下的实际渲染"></a></td></tr>
 </table>
 
-以上界面与矩阵来自 **Schaefer 100 图谱、参考脑和合成 fMRI 信号**，不代表患者结果。顶部为产品概念插画。显示阈值只筛选画面中的连接，不改变完整数值矩阵；没有解剖参考时，显示表面为图谱覆盖包络。
+以上结果来自[脱敏真实样例 rest01](docs/real-example.md)：100 个脑区、145 个时间点。矩阵保留完整 Pearson 相关；三维与八视图共享筛选连接。顶部为产品概念插画。[处理与质控](docs/real-example.md) · [隐私核查](docs/privacy-review.md)
 
-## 详细处理流程
+## 影像到功能连接的处理流程
 
 ![BrainFC 完整处理流程：格式与空间检查、时序提取、联合清理、连接计算、导出与同步视图；使用 archify skill 绘制](docs/assets/processing.png)
 
 [查看清晰矢量图](docs/assets/processing.svg) · [下载交互流程图 HTML](docs/assets/processing.html) · [可编辑流程定义](docs/assets/processing.dataflow.json) · [逐步方法说明](docs/processing.md)
 
-ROI 时序文件可从“统一 ROI 时序”进入；原始影像先走外部 **dcm2niix → BIDS → fMRIPrep**，检查报告后重新导入。BrainFC 的 pip 包不包含这些外部工具，也不自行完成空间预处理；完整外部原始数据链的验证状态见 [验证记录](docs/validation-v0.3.0.md)。
+ROI 时序可直接导入。原始影像需先用外部 **dcm2niix / fMRIPrep** 完成空间预处理，再交由 BrainFC 提取功能连接。
 
 | 想进一步了解 | 文档入口 |
 | :--- | :--- |
@@ -147,4 +154,4 @@ ROI 时序文件可从“统一 ROI 时序”进入；原始影像先走外部 *
 
 Copyright © 2026 BrainFC contributors. 代码采用 [Apache License 2.0](LICENSE)，引用信息见 [CITATION.cff](CITATION.cff)。
 
-计算核心基于 NumPy、SciPy、NiBabel、Nilearn 和 scikit-learn；可视化使用 Matplotlib、React 和 Three.js。三维组件改编自 [Hyper-Brain](https://github.com/hanxiangmin/Hyper-Brain)，BrainFC 可独立安装运行。流程图使用 [archify skill](https://github.com/tt-a1i/archify) 绘制；第三方许可见 [NOTICE](NOTICE) 和 [完整声明](src/brainfc/web/static/THIRD_PARTY_NOTICES.txt)。图谱与数据集遵循各自提供方的许可，本仓库不分发受试者数据。
+计算核心基于 NumPy、SciPy、NiBabel、Nilearn 和 scikit-learn；可视化使用 Matplotlib、React 和 Three.js。网络与超图分析由 [Hyper-Brain](https://github.com/hanxiangmin/Hyper-Brain) 合入，源码及第三方许可保留；详见[来源和迁移说明](docs/hyper-brain-migration.md)。流程图使用 [archify skill](https://github.com/tt-a1i/archify) 绘制；第三方许可见 [NOTICE](NOTICE) 和 [完整声明](src/brainfc/web/static/THIRD_PARTY_NOTICES.txt)。图谱与数据集遵循各自提供方的许可，本仓库仅提供经授权并核查的 rest01 衍生样例，不分发原始 DICOM 或个体 T1/BOLD 强度图像。