braindecode 1.8.1.dev182015723__tar.gz → 1.8.1.dev182241045__tar.gz

{braindecode-1.8.1.dev182015723 → braindecode-1.8.1.dev182241045}/NOTICE.txt

@@ -52,6 +52,7 @@ The following components are licensed under the MIT License:
 - `braindecode/modules/linear_attention.py`
 - `braindecode/models/seizure_transformer.py`
 - `docs/_static/model/seizure_transformer_arch.png`
+- `braindecode/models/guetschel2026.py`
 - `braindecode/models/tmsanet.py`
 
 The `brainomni.py` file is a derivative of `OpenTSLab/BrainOmni` (MIT), whose

{braindecode-1.8.1.dev182015723/braindecode.egg-info → braindecode-1.8.1.dev182241045}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: braindecode
-Version: 1.8.1.dev182015723
+Version: 1.8.1.dev182241045
 Summary: Deep learning software to decode EEG, ECG or MEG signals
 Author-email: Robin Tibor Schirrmeister <robintibor@gmail.com>, Bruno Aristimunha Pinto <b.aristimunha@gmail.com>, Alexandre Gramfort <agramfort@meta.com>
 Maintainer-email: Alexandre Gramfort <agramfort@meta.com>, Bruno Aristimunha Pinto <b.aristimunha@gmail.com>, Robin Tibor Schirrmeister <robintibor@gmail.com>

{braindecode-1.8.1.dev182015723 → braindecode-1.8.1.dev182241045}/braindecode/augmentation/functional.py

@@ -3,6 +3,7 @@
 #          Gustavo Rodrigues <gustavenrique01@gmail.com>
 #          Bruna Lopes <brunajaflopes@gmail.com>
 #          Sarthak Tayal <sarthaktayal2@gmail.com>
+#          Anton Soloviev <anton@praviel.com>
 #
 # License: BSD (3-clause)
 
@@ -931,7 +932,7 @@ def _rotate_signals(
         transformed_X = X.clone()
         sensors_positions = list(sensors_positions_matrix)
         for s, rot_sensors_matrix in enumerate(rot_sensors_matrices):
-            rot_sensors_positions = list(rot_sensors_matrix.T)
+            rot_sensors_positions = list(rot_sensors_matrix)
             for time in range(X.shape[-1]):
                 interpolator_t = Rbf(*sensors_positions, X[s, :, time])
                 transformed_X[s, :, time] = torch.from_numpy(
@@ -1093,7 +1094,8 @@ def segmentation_reconstruction(
     y : torch.Tensor
         EEG labels for the example or batch.
     n_segments : int
-        Number of segments to use in the batch.
+        Number of segments to use in the batch. Any remaining samples are
+        included in the last segment.
     data_classes : list[tuple[int, torch.Tensor]]
         List of tuples. Each tuple contains the class index and the corresponding EEG data.
     rand_indices : array-like
@@ -1133,6 +1135,8 @@ def segmentation_reconstruction(
         for idx_segment in range(n_segments):
             start = idx_segment * segment_size
             end = (idx_segment + 1) * segment_size
+            if idx_segment == n_segments - 1:
+                end = window_size
 
             # Perform the data augmentation
             X_aug[np.arange(n_trials), :, start:end] = X_class[

{braindecode-1.8.1.dev182015723 → braindecode-1.8.1.dev182241045}/braindecode/datasets/base.py

@@ -14,13 +14,16 @@ from __future__ import annotations
 import bisect
 import html as _html
 import json
+import mmap
 import os
 import shutil
 import warnings
 from abc import abstractmethod
 from collections import Counter
-from collections.abc import Callable, Hashable
+from collections.abc import Callable, Hashable, Sequence
 from glob import glob
+from itertools import chain
+from operator import attrgetter
 from pathlib import Path
 from typing import Any, Generic, Iterable, no_type_check
 
@@ -28,6 +31,7 @@ import mne
 import mne.io
 import numpy as np
 import pandas as pd
+from mne.io.constants import FIFF
 from mne.utils import _soft_import
 from mne.utils.docs import deprecated
 from torch.utils.data import ConcatDataset, Dataset, IterableDataset
@@ -220,6 +224,125 @@ def _compute_ch_pos(info, targets_from):
     return pos
 
 
+_TAG_ROW = attrgetter("kind", "type", "size", "next", "pos")
+
+
+def _tag_rows(tags):
+    """(kind, type, size, next, pos) of FIF tags as an int64 array (n, 5)."""
+    flat = chain.from_iterable(map(_TAG_ROW, tags))
+    return np.fromiter(flat, np.int64, 5 * len(tags)).reshape(-1, 5)
+
+
+class _FifTagTable(Sequence):
+    """The data-buffer tags of a lazy FIF raw as one int64 array.
+
+    mne's FIF reader keeps one ``Tag`` object per data buffer in
+    ``raw._raw_extras[i]["ent"]`` (one per second of signal with mne's default
+    buffers), each with its attribute dict and integers once unpickled. A lazy
+    dataset of many recordings holds millions of them in RAM, and every forked
+    DataLoader worker copies the memory pages of those it reads (reference
+    counts). This holds the same fields in 40 bytes per buffer and returns an
+    equal ``Tag`` on access, so mne's own reads are unchanged.
+    """
+
+    def __init__(self, tags):
+        self.tag_class = type(tags[0])
+        self.table = _tag_rows(tags)
+
+    def __len__(self):
+        return len(self.table)
+
+    def __getitem__(self, i):
+        if isinstance(i, slice):
+            return [self.tag_class(*row) for row in self.table[i].tolist()]
+        return self.tag_class(*self.table[i].tolist())
+
+
+_TAG_FIELDS = ("kind", "type", "size", "next", "pos", "data")
+
+
+def _compact_fif_tags(inst):
+    """Swap the ``Tag`` lists of a FIF raw for `_FifTagTable` (in place).
+
+    Only gap-free lists of directory tags (no ``None``, no ``data``) with mne's
+    ``Tag`` fields are swapped; anything else is left as mne built it.
+    """
+    for extra in getattr(inst, "_raw_extras", ()):
+        tags = extra.get("ent")
+        if not isinstance(tags, list) or not tags:
+            continue
+        cls = type(tags[0])
+        if tuple(getattr(cls, "__dataclass_fields__", ())) == _TAG_FIELDS and all(
+            type(t) is cls and t.data is None for t in tags
+        ):
+            extra["ent"] = _FifTagTable(tags)
+    return inst
+
+
+def _read_fif_window(raw, start, stop, willneed=False):
+    """Samples ``start:stop`` of a lazy FIF raw, copied from the file in one go.
+
+    mne reads, casts and calibrates the FIF data buffers of a range one at a
+    time (60 Python steps for a 60-s window saved with 1-s buffers, each through
+    a buffered file whose buffer is 4 MB on network file systems). Here one
+    slice of the memory-mapped file holds the bytes of every buffer in the
+    range and one multiply calibrates them, with mne's arithmetic (float64 data
+    times ``raw._cals``), so the values equal ``raw._getitem``'s. Returns None
+    (the caller uses mne) unless ``raw`` is a lazy, single-file, uncompressed
+    FIF raw of float32 buffers without projector, compensation or gaps.
+
+    With ``willneed=True`` nothing is read and None is returned: the OS is
+    only asked to start reading the window's bytes into the page cache in the
+    background (``posix_fadvise(POSIX_FADV_WILLNEED)``).
+    """
+    if (
+        not isinstance(raw, mne.io.Raw)
+        or raw.preload
+        or len(raw._raw_extras) != 1
+        or raw._projector is not None
+        or raw._comp is not None
+    ):
+        return None
+    extra = raw._raw_extras[0]
+    fname, bounds = extra["filename"], extra["bounds"]
+    if not isinstance(fname, Path) or fname.suffix == ".gz":
+        return None
+    start, stop = start + raw._first_samps[0], stop + raw._first_samps[0]
+    first = np.searchsorted(bounds, start, side="right") - 1
+    tags = extra["ent"]
+    if isinstance(tags, _FifTagTable):
+        rows = tags.table[first : np.searchsorted(bounds, stop)]
+    else:
+        tags = tags[first : np.searchsorted(bounds, stop)]
+        if any(t is None for t in tags):
+            return None
+        rows = _tag_rows(tags)
+    if not len(rows) or (rows[:, 1] != FIFF.FIFFT_FLOAT).any():
+        return None
+    size, pos = rows[:, 2].tolist(), rows[:, 4].tolist()
+    if willneed:  # only a hint: any error is left to the read itself
+        try:
+            with open(fname, "rb") as f:
+                os.posix_fadvise(
+                    f.fileno(),
+                    pos[0],
+                    pos[-1] + 16 + size[-1] - pos[0],
+                    os.POSIX_FADV_WILLNEED,
+                )
+        except OSError:
+            pass
+        return None
+    # mmap: no copy through a 4 MB read buffer, and a cold file is read around
+    # the window by the kernel (as mne's 4 MB reads did), not window by window
+    with open(fname, "rb") as f, mmap.mmap(f.fileno(), 0, access=mmap.ACCESS_READ) as m:
+        buf = m[pos[0] : pos[-1] + 16 + size[-1]]
+    one = np.concatenate(
+        [np.frombuffer(buf, ">f4", s // 4, p + 16 - pos[0]) for s, p in zip(size, pos)]
+    ).reshape(-1, extra["orig_nchan"])[start - bounds[first] : stop - bounds[first]]
+    picked = one[:, raw._read_picks[0]].T
+    return np.multiply(picked, raw._cals[:, np.newaxis], order="C")
+
+
 def _window_info(crop_inds, sfreq):
     """Extract window size from crop indices.
 
@@ -823,9 +946,11 @@ class EEGWindowsDataset(_ZarrMixin, RecordDataset):
         if self._zarr_data is not None:
             X = self._zarr_data[:, i_start:i_stop]
         else:
-            X = self.raw._getitem(
-                (slice(None), slice(i_start, i_stop)), return_times=False
-            )
+            X = _read_fif_window(self.raw, i_start, i_stop)
+            if X is None:
+                X = self.raw._getitem(
+                    (slice(None), slice(i_start, i_stop)), return_times=False
+                )
         X = np.array(X, dtype="float32")
         if self.transform is not None:
             X = self.transform(X)
@@ -1253,7 +1378,8 @@ class BaseConcatDataset(ConcatDataset, HubDatasetMixin, Generic[T]):
     def __len__(self):
         return self._ensure_cumulative_sizes()[-1]
 
-    def _get_single_item(self, idx: int):
+    def _locate(self, idx: int):
+        """The dataset that holds item ``idx`` and the item's index in it."""
         if idx < 0:
             if -idx > len(self):
                 raise ValueError(
@@ -1267,7 +1393,33 @@ class BaseConcatDataset(ConcatDataset, HubDatasetMixin, Generic[T]):
             sample_idx = idx
         else:
             sample_idx = idx - cumulative_sizes[dataset_idx - 1]
-        return self.datasets[dataset_idx][sample_idx]
+        return self.datasets[dataset_idx], sample_idx
+
+    def _get_single_item(self, idx: int):
+        ds, i = self._locate(idx)
+        return ds[i]
+
+    def __getitems__(self, indices):
+        """Items ``indices``, as ``[self[i] for i in indices]``.
+
+        A :class:`~torch.utils.data.DataLoader` fetches each batch through
+        this. The lazy FIF windows of the batch are first requested from the
+        OS all at once (``posix_fadvise(POSIX_FADV_WILLNEED)``, where it
+        exists), so their reads from disk overlap instead of running one after
+        another: on a network file system a batch read from cold files then
+        costs about one round trip, not one per window.
+        """
+        # ponytail: advises the whole batch at once; chunk it if a batch's
+        # windows ever outgrow the page cache
+        if hasattr(os, "posix_fadvise"):
+            for idx in indices:
+                if not isinstance(idx, (int, np.integer)):
+                    continue  # e.g. a SequenceSampler tuple: read, not advised
+                ds, i = self._locate(idx)
+                if isinstance(ds, EEGWindowsDataset) and ds._zarr_data is None:
+                    _, start, stop = ds.crop_inds[i].tolist()
+                    _read_fif_window(ds.raw, start, stop, willneed=True)
+        return [self[idx] for idx in indices]
 
     def __getitem__(self, idx: int | list):
         """
@@ -1672,7 +1824,8 @@ class BaseConcatDataset(ConcatDataset, HubDatasetMixin, Generic[T]):
                 kwargs_path = os.path.join(path, ".".join([kwarg_name, "json"]))
                 kwargs = getattr(self, kwarg_name)
                 if kwargs is not None:
-                    json.dump(kwargs, open(kwargs_path, "w"))
+                    with open(kwargs_path, "w") as f:
+                        json.dump(kwargs, f)
 
     @property
     def description(self) -> pd.DataFrame:
@@ -1742,7 +1895,10 @@ class BaseConcatDataset(ConcatDataset, HubDatasetMixin, Generic[T]):
         # Create path if it doesn't exist
         os.makedirs(path, exist_ok=True)
 
-        path_contents = os.listdir(path)
+        # With an offset the caller fills one directory piece by piece (preprocess
+        # saves each recording at its index), so the other entries are expected:
+        # skip the scan that would stat them all on every call and list them in a warning.
+        path_contents = os.listdir(path) if offset == 0 else []
         n_sub_dirs = len(
             [e for e in path_contents if os.path.isdir(os.path.join(path, e))]
         )

{braindecode-1.8.1.dev182015723 → braindecode-1.8.1.dev182241045}/braindecode/datasets/tuh.py

@@ -11,10 +11,12 @@ TUH Abnormal EEG Corpus.
 from __future__ import annotations
 
 import glob
+import json
 import os
 import re
 import warnings
 from datetime import datetime, timezone
+from functools import cache
 from pathlib import Path
 from typing import Iterable, Literal
 from unittest import mock
@@ -183,11 +185,8 @@ class TUH(BaseConcatDataset):
         }
         raw.rename_channels(mapping_strip)
 
-        montage1005 = mne.channels.make_standard_montage(
-            resolve_montage_name("standard_1005")
-        )
         mapping_eeg_names = {
-            c.upper(): c for c in montage1005.ch_names if c.upper() in raw.ch_names
+            c.upper(): c for c in _standard_1005().ch_names if c.upper() in raw.ch_names
         }
 
         # Set channels whose type could not be inferred (defaulted to "eeg") to "misc":
@@ -210,10 +209,7 @@ class TUH(BaseConcatDataset):
 
     @staticmethod
     def _set_montage(raw):
-        montage = mne.channels.make_standard_montage(
-            resolve_montage_name("standard_1005")
-        )
-        raw.set_montage(montage, on_missing="ignore")
+        raw.set_montage(_standard_1005(), on_missing="ignore")
 
     @staticmethod
     def _create_dataset(
@@ -245,7 +241,11 @@ class TUH(BaseConcatDataset):
         # file paths, use this instead as before
         if "year" in description:
             meas_date = meas_date.replace(*description[["year", "month", "day"]])
-        raw.set_meas_date(meas_date)
+        # FIF (e.g. preprocess(..., save_dir=...)) stores dates from 1901-12-13 to
+        # 2038-01-19 only: undated recordings (year 1 above) and de-identified ones
+        # (TUAB has 1899-12-30) keep their date in the description only.
+        in_fif_range = -(2**31) <= meas_date.timestamp() < 2**31
+        raw.set_meas_date(meas_date if in_fif_range else None)
 
         d = {
             "age": int(age),
@@ -255,9 +255,9 @@ class TUH(BaseConcatDataset):
         # if not, get it from meas_date in raw.info and add to description
         # if meas_date is None, create fake one
         if "year" not in description:
-            d["year"] = raw.info["meas_date"].year
-            d["month"] = raw.info["meas_date"].month
-            d["day"] = raw.info["meas_date"].day
+            d["year"] = meas_date.year
+            d["month"] = meas_date.month
+            d["day"] = meas_date.day
 
         # read info relevant for preprocessing from raw without loading it
         if add_physician_reports:
@@ -269,6 +269,12 @@ class TUH(BaseConcatDataset):
         return base_dataset
 
 
+@cache
+def _standard_1005():
+    # Built once per process: set_montage copies the montage before using it.
+    return mne.channels.make_standard_montage(resolve_montage_name("standard_1005"))
+
+
 def _create_description(file_paths, version, ds_name):
     descriptions = [
         _parse_description_from_file_path(f, version, ds_name) for f in file_paths
@@ -289,7 +295,8 @@ def _read_date(file_path):
     date_path = file_path.replace(".edf", "_date.txt")
     # if date file exists, read it
     if os.path.exists(date_path):
-        description = pd.read_json(date_path, typ="series").to_dict()
+        with open(date_path) as f:
+            description = json.load(f)
     # otherwise read edf file, extract date and store to file
     else:
         raw = mne.io.read_raw_edf(file_path, preload=False, verbose="error")

{braindecode-1.8.1.dev182015723 → braindecode-1.8.1.dev182241045}/braindecode/datautil/serialization.py

@@ -21,6 +21,7 @@ from ..datasets.base import (
     EEGWindowsDataset,
     RawDataset,
     WindowsDataset,
+    _compact_fif_tags,
 )
 
 
@@ -79,7 +80,8 @@ def _outdated_load_concat_dataset(path, preload, ids_to_load=None, target_name=N
     for path in paths:
         if is_raw and target_name is None:
             target_file_name = path / "target_name.json"
-            target_name = json.load(open(target_file_name, "r"))["target_name"]
+            with open(target_file_name) as f:
+                target_name = json.load(f)["target_name"]
 
         all_signals, description = _load_signals_and_description(
             path=path, preload=preload, is_raw=is_raw, ids_to_load=ids_to_load
@@ -141,7 +143,7 @@ def _load_signals(fif_file, preload, is_raw):
         if all(Path(f).exists() for f in signals.filenames):
             if preload:
                 signals.load_data()
-            return signals
+            return _compact_fif_tags(signals)
         else:  # This may happen if the file has been moved together with the pickle file.
             warnings.warn(
                 f"Pickle file {pkl_file} exists, but the referenced fif "
@@ -171,7 +173,8 @@ def _load_signals(fif_file, preload, is_raw):
             if preload:
                 signals._data, signals.preload = data, True
 
-    return signals
+    # after the pickle above, which keeps mne's own layout on disk
+    return _compact_fif_tags(signals)
 
 
 def load_concat_dataset(path, preload, ids_to_load=None, target_name=None, n_jobs=1):
@@ -264,7 +267,8 @@ def _load_parallel(path, i, preload, is_raw, has_stored_windows):
     target_file_path = sub_dir / "target_name.json"
     target_name = None
     if target_file_path.exists():
-        target_name = json.load(open(target_file_path, "r"))["target_name"]
+        with open(target_file_path) as f:
+            target_name = json.load(f)["target_name"]
 
     if is_raw and (not has_stored_windows):
         dataset = RawDataset(signals, description, target_name)
@@ -304,8 +308,8 @@ def _load_kwargs_json(kwargs_name, sub_dir):
     kwargs_file_name = ".".join([kwargs_name, "json"])
     kwargs_file_path = os.path.join(sub_dir, kwargs_file_name)
     if os.path.exists(kwargs_file_path):
-        kwargs = json.load(open(kwargs_file_path, "r"))
-        return kwargs
+        with open(kwargs_file_path) as f:
+            return json.load(f)
 
 
 def _is_outdated_saved(path):

{braindecode-1.8.1.dev182015723 → braindecode-1.8.1.dev182241045}/braindecode/functional/_real_dft.py

@@ -12,8 +12,10 @@ never downcast, so callers wrap the numerically sensitive parts with
 #
 # License: BSD (3-clause)
 import functools
+from typing import Optional
 
 import torch
+from torch import nn
 
 
 def needs_real_dft(x: torch.Tensor) -> bool:
@@ -136,3 +138,56 @@ def hilbert_freq_real(x: torch.Tensor, forward_fourier: bool) -> torch.Tensor:
         return torch.stack((out_real, out_imag), dim=-1)
 
     return compute(x)
+
+
+@torch.jit.unused
+def fft_conv1d_real(
+    x: torch.Tensor, weight: torch.Tensor, bias: Optional[torch.Tensor]
+) -> torch.Tensor:
+    """Real-valued equivalent of :func:`braindecode.functional.fft_conv1d`.
+
+    Overlap-save: the input is cut into blocks of ``n`` samples (the power of
+    two ``>= 2 * kernel_size``) that advance by ``n - kernel_size + 1`` outputs,
+    each block's DFT is a matmul against the cosine/sine basis, and per
+    frequency the complex product with the kernels, summed over the input
+    channels, is one real matmul.
+    """
+
+    @fp32_island
+    def compute(x, weight):
+        n_times, kernel_size = x.shape[-1], weight.shape[-1]
+        n = 1 << (2 * kernel_size - 1).bit_length()
+        hop = n - kernel_size + 1
+        n_blocks = -(-n_times // hop)
+        n_freqs = n // 2 + 1
+        # "same" alignment: torch pads the extra zero of an even kernel on the right
+        left = (kernel_size - 1) // 2
+        x = nn.functional.pad(x, (left, (n_blocks + 1) * hop - n_times - left))
+        hops = x.unflatten(-1, (n_blocks + 1, hop))
+        # block i = hop i + the first kernel_size - 1 samples of hop i + 1
+        blocks = torch.cat([hops[:, :, :-1], hops[:, :, 1:, : kernel_size - 1]], -1)
+        cosine, sine = real_dft_basis(n, device=x.device, dtype=x.dtype)
+        basis = torch.cat([cosine, -sine]).transpose(0, 1)  # -> [Re | Im] of rfft
+        x_f = blocks @ basis  # (batch, in, blocks, 2 * n_freqs)
+        w_f = nn.functional.pad(weight.to(x), (0, n - kernel_size)) @ basis
+        w_re, w_im = w_f[..., :n_freqs], w_f[..., n_freqs:]
+        # conv1d is a cross-correlation: x_f * conj(w_f), summed over the input
+        # channels. Per frequency [Re x, Im x] @ [[Re w, -Im w], [Im w, Re w]].
+        w_f = torch.cat([torch.cat([w_re, -w_im]), torch.cat([w_im, w_re])], 1)
+        x_f = x_f.unflatten(-1, (2, n_freqs)).permute(4, 0, 2, 3, 1).flatten(1, 2)
+        y_f = torch.bmm(x_f.flatten(2), w_f.permute(2, 1, 0))  # (freq, ., 2 * out)
+        y_f = y_f.unflatten(1, (x.shape[0], n_blocks)).unflatten(-1, (2, -1))
+        y_f = y_f.permute(1, 4, 2, 3, 0).flatten(
+            -2
+        )  # (batch, out, blocks, 2 * n_freqs)
+        # inverse DFT of the first `hop` samples, the ones without wrap-around
+        scale = torch.full((n_freqs, 1), 2.0 / n, dtype=x.dtype, device=x.device)
+        scale[0] = 1.0 / n
+        scale[-1] = 1.0 / n  # Nyquist (n is even)
+        inverse = torch.cat([scale * cosine[:, :hop], -scale * sine[:, :hop]])
+        return (y_f @ inverse).flatten(-2)[..., :n_times]
+
+    y = compute(x, weight)
+    if bias is not None:
+        y = y + bias.to(y).unsqueeze(-1)
+    return y.to(x)

{braindecode-1.8.1.dev182015723 → braindecode-1.8.1.dev182241045}/braindecode/functional/functions.py

@@ -62,9 +62,10 @@ def fft_conv1d(
 
     Equal to the direct convolution up to float rounding: the FFT is long
     enough for a linear (not circular) convolution. Its cost barely grows with
-    the kernel size, so it is faster than the direct one for long kernels on
-    CPU (see :func:`prefer_fft_conv`). float16/bfloat16 inputs are computed in
-    float32 (:func:`spectral_input`) and cast back.
+    the kernel size, so it is faster than the direct one for long kernels
+    (see :func:`prefer_fft_conv`). float16/bfloat16 inputs are computed in
+    float32 (:func:`spectral_input`) and cast back. On Intel Gaudi (HPU, no
+    complex dtype) the DFTs are real matmuls over overlapping blocks.
 
     Parameters
     ----------
@@ -82,6 +83,8 @@ def fft_conv1d(
         ``x``. For an even ``kernel_size`` it is aligned like torch's
         ``padding="same"`` (the extra zero padded on the right).
     """
+    if _real_dft.needs_real_dft(x):
+        return _real_dft.fft_conv1d_real(x, weight, bias)
     n_times, kernel_size = x.shape[-1], weight.shape[-1]
     # >= n_times + kernel_size - 1 (no circular wrap-around), even and
     # 5-smooth: the fast cases of a real FFT
@@ -112,8 +115,14 @@ def prefer_fft_conv(x: torch.Tensor, kernel_size: int) -> bool:
     Rule measured for :class:`~braindecode.models.EEGInceptionMI` (48 to 240
     channels, 128-500 Hz, 2 CPU threads, oneDNN on and off): on CPU the FFT
     wins for float16/bfloat16 inputs (no fast half-precision CPU convolution)
-    and from ``batch_size * kernel_size >= 600``. GPUs and HPUs (no complex
-    dtype) keep the direct convolution.
+    and from ``batch_size * kernel_size >= 600`` if also
+    ``in_channels * kernel_size >= 120``: with one or two input channels a
+    float32 direct convolution stays cheaper up to k = 85 / 31 (13 long
+    temporal convolutions of the model zoo, 22 channels x batch 32). On Intel
+    Gaudi (HPU) a direct convolution costs about ``batch_size * n_times *
+    kernel_size`` and the FFT about a fixed few milliseconds in eager mode: the
+    FFT wins from 8 input channels and ``batch_size * n_times * kernel_size >=
+    8e6``. GPUs keep the direct convolution.
 
     Parameters
     ----------
@@ -122,8 +131,11 @@ def prefer_fft_conv(x: torch.Tensor, kernel_size: int) -> bool:
     kernel_size : int
         Kernel length in samples.
     """
+    if x.device.type == "hpu":
+        return x.shape[1] >= 8 and x.shape[0] * x.shape[-1] * kernel_size >= 8e6
     return x.device.type == "cpu" and (
-        x.element_size() == 2 or x.shape[0] * kernel_size >= 600
+        x.element_size() == 2
+        or (x.shape[0] * kernel_size >= 600 and x.shape[1] * kernel_size >= 120)
     )
 
 
@@ -367,18 +379,24 @@ def plv_time(
     )
     # Normalize the analytic signal to obtain unit vectors (phasors).
     unit_phasor = analytic_signal / amplitude.unsqueeze(-1)
+    # The real/imaginary slices are strided (step 2): matmul copied each of
+    # them for every product, per batch matrix. Copy them once.
+    real = unit_phasor[..., 0].contiguous()
+    imag = unit_phasor[..., 1].contiguous()
+    real_t = real.transpose(-2, -1).contiguous()
+    imag_t = imag.transpose(-2, -1).contiguous()
 
     # Compute the real part of the outer product between phasors of
     # different channels.
-    real_real = torch.matmul(unit_phasor[..., 0], unit_phasor[..., 0].transpose(-2, -1))
+    real_real = torch.matmul(real, real_t)
 
     # Compute the imaginary part of the outer product between phasors of
     # different channels.
-    imag_imag = torch.matmul(unit_phasor[..., 1], unit_phasor[..., 1].transpose(-2, -1))
+    imag_imag = torch.matmul(imag, imag_t)
 
     # Compute the cross-terms for the real and imaginary parts.
-    real_imag = torch.matmul(unit_phasor[..., 0], unit_phasor[..., 1].transpose(-2, -1))
-    imag_real = torch.matmul(unit_phasor[..., 1], unit_phasor[..., 0].transpose(-2, -1))
+    real_imag = torch.matmul(real, imag_t)
+    imag_real = torch.matmul(imag, real_t)
 
     # Combine the real and imaginary parts to form the complex correlation.
     correlation_real = real_real + imag_imag

{braindecode-1.8.1.dev182015723 → braindecode-1.8.1.dev182241045}/braindecode/models/__init__.py

@@ -39,6 +39,7 @@ from .emg2qwerty import EMG2QwertyNet
 from .fbcnet import FBCNet
 from .fblightconvnet import FBLightConvNet
 from .fbmsnet import FBMSNet
+from .guetschel2026 import Guetschel2026
 from .hybrid import HybridNet
 from .ifnet import IFNet
 from .labram import Labram
@@ -139,6 +140,7 @@ __all__ = [
     "FBCNet",
     "FBLightConvNet",
     "FBMSNet",
+    "Guetschel2026",
     "MetaNeuromotorHand",
     "HybridNet",
     "IFNet",

{braindecode-1.8.1.dev182015723 → braindecode-1.8.1.dev182241045}/braindecode/models/attn_sleep.py

@@ -143,6 +143,10 @@ class AttnSleep(EEGModuleMixin, nn.Module):
             sfreq=sfreq,
         )
         del n_outputs, n_chans, chs_info, n_times, input_window_seconds, sfreq
+        if self._n_chans_for_jit not in (None, 1):
+            raise ValueError(
+                f"AttnSleep takes single-channel input; got n_chans={self._n_chans_for_jit}."
+            )
 
         self.mapping = {
             "fc.weight": "final_layer.weight",
@@ -407,16 +411,12 @@ class _MRCNN(nn.Module):
 ##########################################################################################
 
 
-def _attention(
-    query: torch.Tensor, key: torch.Tensor, value: torch.Tensor
-) -> tuple[torch.Tensor, torch.Tensor]:
-    """Implementation of Scaled dot product attention."""
+def _attention(query: torch.Tensor, key: torch.Tensor) -> torch.Tensor:
+    """Scaled dot product attention weights."""
     # d_k - dimension of the query and key vectors
     d_k = query.size(-1)
     scores = torch.matmul(query, key.transpose(-2, -1)) / math.sqrt(d_k)
-    p_attn = F.softmax(scores, dim=-1)  # attention weights
-    output = torch.matmul(p_attn, value)  # (B, h, T, d_k)
-    return output, p_attn
+    return F.softmax(scores, dim=-1)  # attention weights
 
 
 class _MultiHeadedAttention(nn.Module):
@@ -464,10 +464,8 @@ class _MultiHeadedAttention(nn.Module):
             .transpose(1, 2)
         )
 
-        x_raw, attn_weights = _attention(query, key, value)
-        # apply dropout to the *weights*
-        attn = self.dropout(attn_weights)
-        # recompute the weighted sum with dropped weights
+        # apply dropout to the *weights*, then the weighted sum
+        attn = self.dropout(_attention(query, key))
         x = torch.matmul(attn, value)
 
         # merge heads and project