braindecode 1.3.2.dev184484862__tar.gz → 1.4.0__tar.gz

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Files changed (529) hide show
  1. {braindecode-1.3.2.dev184484862/braindecode.egg-info → braindecode-1.4.0}/PKG-INFO +41 -11
  2. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/README.rst +36 -6
  3. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/augmentation/transforms.py +6 -4
  4. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/datasets/base.py +799 -19
  5. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/datasets/bids/hub.py +222 -106
  6. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/datasets/bids/hub_io.py +44 -44
  7. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/datasets/mne.py +48 -4
  8. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/datautil/hub_formats.py +16 -3
  9. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/models/__init__.py +4 -0
  10. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/models/base.py +293 -104
  11. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/models/bendr.py +86 -25
  12. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/models/biot.py +23 -5
  13. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/models/cbramod.py +28 -6
  14. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/models/config.py +29 -29
  15. braindecode-1.4.0/braindecode/models/deepsleepnet.py +477 -0
  16. braindecode-1.4.0/braindecode/models/dgcnn.py +500 -0
  17. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/models/eeginception_mi.py +2 -1
  18. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/models/eegitnet.py +4 -3
  19. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/models/eegpt.py +15 -2
  20. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/models/eegsym.py +1 -1
  21. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/models/labram.py +15 -1
  22. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/models/luna.py +11 -21
  23. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/models/patchedtransformer.py +5 -3
  24. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/models/reve.py +59 -23
  25. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/models/shallow_fbcsp.py +16 -8
  26. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/models/signal_jepa.py +63 -13
  27. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/models/sstdpn.py +1 -1
  28. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/models/summary.csv +1 -0
  29. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/models/util.py +147 -14
  30. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/modules/__init__.py +2 -1
  31. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/modules/activation.py +20 -0
  32. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/modules/attention.py +2 -1
  33. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/preprocessing/mne_preprocess.py +2 -1
  34. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/preprocessing/preprocess.py +62 -32
  35. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/preprocessing/windowers.py +312 -78
  36. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/util.py +34 -4
  37. braindecode-1.4.0/braindecode/version.py +1 -0
  38. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode/visualization/gradients.py +7 -7
  39. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0/braindecode.egg-info}/PKG-INFO +41 -11
  40. braindecode-1.4.0/braindecode.egg-info/SOURCES.txt +524 -0
  41. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/braindecode.egg-info/requires.txt +4 -4
  42. braindecode-1.4.0/docs/_build/html/_downloads/090305d06248840b75133975e5121f41/plot_sleep_staging_chambon2018.ipynb +291 -0
  43. braindecode-1.4.0/docs/_build/html/_downloads/0ada35f18bb95235ba2842270483081f/plot_finetune_foundation_model.ipynb +201 -0
  44. braindecode-1.4.0/docs/_build/html/_downloads/0f2bf063e08b7d05b80e0004fcbbb6f9/benchmark_lazy_eager_loading.ipynb +183 -0
  45. braindecode-1.4.0/docs/_build/html/_downloads/137d0b161de96c88644fd65258fc20b5/tutorial_create_fixed_window_length.ipynb +190 -0
  46. braindecode-1.4.0/docs/_build/html/_downloads/1c6590d134fa0befda654e89aa55b2ac/plot_benchmark_preprocessing.ipynb +104 -0
  47. braindecode-1.4.0/docs/_build/html/_downloads/1d879df548fa18be8c23d9ca0dc008d4/plot_data_augmentation.ipynb +259 -0
  48. braindecode-1.4.0/docs/_build/html/_downloads/2466f8ec5c733d0bd65e187b45d875cc/plot_data_augmentation_search.ipynb +302 -0
  49. braindecode-1.4.0/docs/_build/html/_downloads/263464a28477cf8decb861ae6e2e9be7/plot_how_train_test_and_tune.ipynb +375 -0
  50. braindecode-1.4.0/docs/_build/html/_downloads/3862cafd7f0d815e434319ffe525afc8/plot_bcic_iv_2a_moabb_cropped.ipynb +226 -0
  51. braindecode-1.4.0/docs/_build/html/_downloads/408ca4ffd0ea1f76faa9ef602734ac94/plot_tuh_eeg_corpus.ipynb +187 -0
  52. braindecode-1.4.0/docs/_build/html/_downloads/5030717acb00990b394b83314b0797d9/plot_bids_dataset_example.ipynb +97 -0
  53. braindecode-1.4.0/docs/_build/html/_downloads/66ea18b3b9cf0802bbd32bb903ab554e/plot_temporal_generalization.ipynb +312 -0
  54. braindecode-1.4.0/docs/_build/html/_downloads/75a73c7d94f3a671fd3dec28f4031ead/plot_regression.ipynb +212 -0
  55. braindecode-1.4.0/docs/_build/html/_downloads/84fbcd59a346e5e56758285122dc69e2/plot_sleep_staging_eldele2021.ipynb +291 -0
  56. braindecode-1.4.0/docs/_build/html/_downloads/8616a7f968141825e56ab3e3d59be449/plot_tuh_discrete_multitarget.ipynb +169 -0
  57. braindecode-1.4.0/docs/_build/html/_downloads/8b5ba06718764b959e8dea1dd0bb97df/plot_sleep_staging_usleep.ipynb +255 -0
  58. braindecode-1.4.0/docs/_build/html/_downloads/91651c9d4fde110b4a53f5775a91acc5/plot_mne_dataset_example.ipynb +104 -0
  59. braindecode-1.4.0/docs/_build/html/_downloads/93fdea8cbadaf0e3afa2eb2be3ebc483/bcic_iv_4_ecog_trial.ipynb +376 -0
  60. braindecode-1.4.0/docs/_build/html/_downloads/9a4447462c3b255ba7e5ca212bbadd52/plot_bcic_iv_2a_moabb_trial.ipynb +271 -0
  61. braindecode-1.4.0/docs/_build/html/_downloads/9ecad1eb1db853df0ba20dbb97303c02/plot_exca_config.ipynb +439 -0
  62. braindecode-1.4.0/docs/_build/html/_downloads/a2f12129facb042643a99d4b9de1886d/bcic_iv_4_ecog_cropped.ipynb +345 -0
  63. braindecode-1.4.0/docs/_build/html/_downloads/a39e4245738e55e0eb7084c545ed05bc/plot_hyperparameter_tuning_with_scikit-learn.ipynb +257 -0
  64. braindecode-1.4.0/docs/_build/html/_downloads/a6249715d3c30cb41c4af85938cca008/plot_moabb_dataset_example.ipynb +140 -0
  65. braindecode-1.4.0/docs/_build/html/_downloads/a868f9d41de95f5f6defc26e291cf4aa/plot_preprocessing_classes.ipynb +194 -0
  66. braindecode-1.4.0/docs/_build/html/_downloads/a86d0c5f3a882a069df1683a708d3e25/plot_train_in_pure_pytorch_and_pytorch_lightning.ipynb +250 -0
  67. braindecode-1.4.0/docs/_build/html/_downloads/aa8426d97090e7b3062c4e4732c3214a/plot_relative_positioning.ipynb +266 -0
  68. braindecode-1.4.0/docs/_build/html/_downloads/b9d19304ecd233ea7a79d4365316ea49/plot_load_save_datasets.ipynb +176 -0
  69. braindecode-1.4.0/docs/_build/html/_downloads/cb62940d13f700ed2b9e813705e9d437/plot_moabb_benchmark.ipynb +122 -0
  70. braindecode-1.4.0/docs/_build/html/_downloads/cd24c95e5e6c988ebb6ece50ac672ab5/plot_bcic_iv_2a_eegprep_cleaning.ipynb +260 -0
  71. braindecode-1.4.0/docs/_build/html/_downloads/f158ead3e4720f6f4685ff1d3f48dc15/plot_hub_integration.ipynb +201 -0
  72. braindecode-1.4.0/docs/_build/html/_downloads/f3c89d39e947a121c7920b4d415413a2/plot_split_dataset.ipynb +180 -0
  73. braindecode-1.4.0/docs/_build/html/_downloads/f7b38cac92c078838442753121efc297/plot_custom_dataset_example.ipynb +140 -0
  74. braindecode-1.4.0/docs/_build/html/_downloads/fa7c2c982eb044a92a764e44b7365fd6/plot_load_pretrained_models.ipynb +222 -0
  75. braindecode-1.4.0/docs/_build/html/_downloads/fff46913db5173d3ae22c1113acffb45/plot_basic_training_epochs.ipynb +237 -0
  76. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/docs/api.rst +11 -9
  77. braindecode-1.4.0/docs/auto_examples/advanced_training/bcic_iv_4_ecog_cropped.ipynb +345 -0
  78. braindecode-1.4.0/docs/auto_examples/advanced_training/bcic_iv_4_ecog_cropped.rst +626 -0
  79. braindecode-1.4.0/docs/auto_examples/advanced_training/index.rst +173 -0
  80. braindecode-1.4.0/docs/auto_examples/advanced_training/plot_data_augmentation.ipynb +259 -0
  81. braindecode-1.4.0/docs/auto_examples/advanced_training/plot_data_augmentation.rst +419 -0
  82. braindecode-1.4.0/docs/auto_examples/advanced_training/plot_data_augmentation_search.ipynb +302 -0
  83. braindecode-1.4.0/docs/auto_examples/advanced_training/plot_data_augmentation_search.rst +523 -0
  84. braindecode-1.4.0/docs/auto_examples/advanced_training/plot_exca_config.ipynb +439 -0
  85. braindecode-1.4.0/docs/auto_examples/advanced_training/plot_exca_config.rst +693 -0
  86. braindecode-1.4.0/docs/auto_examples/advanced_training/plot_finetune_foundation_model.ipynb +201 -0
  87. braindecode-1.4.0/docs/auto_examples/advanced_training/plot_finetune_foundation_model.rst +377 -0
  88. braindecode-1.4.0/docs/auto_examples/advanced_training/plot_moabb_benchmark.ipynb +122 -0
  89. braindecode-1.4.0/docs/auto_examples/advanced_training/plot_moabb_benchmark.rst +231 -0
  90. braindecode-1.4.0/docs/auto_examples/advanced_training/plot_relative_positioning.ipynb +266 -0
  91. braindecode-1.4.0/docs/auto_examples/advanced_training/plot_relative_positioning.rst +689 -0
  92. braindecode-1.4.0/docs/auto_examples/advanced_training/plot_temporal_generalization.ipynb +312 -0
  93. braindecode-1.4.0/docs/auto_examples/advanced_training/plot_temporal_generalization.rst +808 -0
  94. braindecode-1.4.0/docs/auto_examples/advanced_training/sg_execution_times.rst +58 -0
  95. braindecode-1.4.0/docs/auto_examples/applied_examples/bcic_iv_4_ecog_trial.ipynb +376 -0
  96. braindecode-1.4.0/docs/auto_examples/applied_examples/bcic_iv_4_ecog_trial.rst +581 -0
  97. braindecode-1.4.0/docs/auto_examples/applied_examples/index.rst +137 -0
  98. braindecode-1.4.0/docs/auto_examples/applied_examples/plot_sleep_staging_chambon2018.ipynb +291 -0
  99. braindecode-1.4.0/docs/auto_examples/applied_examples/plot_sleep_staging_chambon2018.rst +521 -0
  100. braindecode-1.4.0/docs/auto_examples/applied_examples/plot_sleep_staging_eldele2021.ipynb +291 -0
  101. braindecode-1.4.0/docs/auto_examples/applied_examples/plot_sleep_staging_eldele2021.rst +519 -0
  102. braindecode-1.4.0/docs/auto_examples/applied_examples/plot_sleep_staging_usleep.ipynb +255 -0
  103. braindecode-1.4.0/docs/auto_examples/applied_examples/plot_sleep_staging_usleep.rst +468 -0
  104. braindecode-1.4.0/docs/auto_examples/applied_examples/plot_tuh_eeg_corpus.ipynb +187 -0
  105. braindecode-1.4.0/docs/auto_examples/applied_examples/plot_tuh_eeg_corpus.rst +433 -0
  106. braindecode-1.4.0/docs/auto_examples/applied_examples/sg_execution_times.rst +52 -0
  107. braindecode-1.4.0/docs/auto_examples/applied_examples/tutorial_create_fixed_window_length.ipynb +190 -0
  108. braindecode-1.4.0/docs/auto_examples/applied_examples/tutorial_create_fixed_window_length.rst +365 -0
  109. braindecode-1.4.0/docs/auto_examples/datasets_io/benchmark_lazy_eager_loading.ipynb +183 -0
  110. braindecode-1.4.0/docs/auto_examples/datasets_io/benchmark_lazy_eager_loading.rst +504 -0
  111. braindecode-1.4.0/docs/auto_examples/datasets_io/index.rst +209 -0
  112. braindecode-1.4.0/docs/auto_examples/datasets_io/plot_benchmark_preprocessing.ipynb +104 -0
  113. braindecode-1.4.0/docs/auto_examples/datasets_io/plot_benchmark_preprocessing.rst +257 -0
  114. braindecode-1.4.0/docs/auto_examples/datasets_io/plot_bids_dataset_example.ipynb +97 -0
  115. braindecode-1.4.0/docs/auto_examples/datasets_io/plot_bids_dataset_example.rst +110 -0
  116. braindecode-1.4.0/docs/auto_examples/datasets_io/plot_custom_dataset_example.ipynb +140 -0
  117. braindecode-1.4.0/docs/auto_examples/datasets_io/plot_custom_dataset_example.rst +163 -0
  118. braindecode-1.4.0/docs/auto_examples/datasets_io/plot_hub_integration.ipynb +201 -0
  119. braindecode-1.4.0/docs/auto_examples/datasets_io/plot_hub_integration.rst +459 -0
  120. braindecode-1.4.0/docs/auto_examples/datasets_io/plot_load_save_datasets.ipynb +176 -0
  121. braindecode-1.4.0/docs/auto_examples/datasets_io/plot_load_save_datasets.rst +202 -0
  122. braindecode-1.4.0/docs/auto_examples/datasets_io/plot_mne_dataset_example.ipynb +104 -0
  123. braindecode-1.4.0/docs/auto_examples/datasets_io/plot_mne_dataset_example.rst +135 -0
  124. braindecode-1.4.0/docs/auto_examples/datasets_io/plot_moabb_dataset_example.ipynb +140 -0
  125. braindecode-1.4.0/docs/auto_examples/datasets_io/plot_moabb_dataset_example.rst +156 -0
  126. braindecode-1.4.0/docs/auto_examples/datasets_io/plot_split_dataset.ipynb +180 -0
  127. braindecode-1.4.0/docs/auto_examples/datasets_io/plot_split_dataset.rst +223 -0
  128. braindecode-1.4.0/docs/auto_examples/datasets_io/plot_tuh_discrete_multitarget.ipynb +169 -0
  129. braindecode-1.4.0/docs/auto_examples/datasets_io/plot_tuh_discrete_multitarget.rst +232 -0
  130. braindecode-1.4.0/docs/auto_examples/datasets_io/sg_execution_times.rst +64 -0
  131. braindecode-1.4.0/docs/auto_examples/index.rst +714 -0
  132. braindecode-1.4.0/docs/auto_examples/model_building/index.rst +209 -0
  133. braindecode-1.4.0/docs/auto_examples/model_building/plot_basic_training_epochs.ipynb +237 -0
  134. braindecode-1.4.0/docs/auto_examples/model_building/plot_basic_training_epochs.rst +320 -0
  135. braindecode-1.4.0/docs/auto_examples/model_building/plot_bcic_iv_2a_eegprep_cleaning.ipynb +260 -0
  136. braindecode-1.4.0/docs/auto_examples/model_building/plot_bcic_iv_2a_eegprep_cleaning.rst +538 -0
  137. braindecode-1.4.0/docs/auto_examples/model_building/plot_bcic_iv_2a_moabb_cropped.ipynb +226 -0
  138. braindecode-1.4.0/docs/auto_examples/model_building/plot_bcic_iv_2a_moabb_cropped.rst +513 -0
  139. braindecode-1.4.0/docs/auto_examples/model_building/plot_bcic_iv_2a_moabb_trial.ipynb +271 -0
  140. braindecode-1.4.0/docs/auto_examples/model_building/plot_bcic_iv_2a_moabb_trial.rst +482 -0
  141. braindecode-1.4.0/docs/auto_examples/model_building/plot_how_train_test_and_tune.ipynb +375 -0
  142. braindecode-1.4.0/docs/auto_examples/model_building/plot_how_train_test_and_tune.rst +854 -0
  143. braindecode-1.4.0/docs/auto_examples/model_building/plot_hyperparameter_tuning_with_scikit-learn.ipynb +257 -0
  144. braindecode-1.4.0/docs/auto_examples/model_building/plot_hyperparameter_tuning_with_scikit-learn.rst +498 -0
  145. braindecode-1.4.0/docs/auto_examples/model_building/plot_load_pretrained_models.ipynb +222 -0
  146. braindecode-1.4.0/docs/auto_examples/model_building/plot_load_pretrained_models.rst +597 -0
  147. braindecode-1.4.0/docs/auto_examples/model_building/plot_preprocessing_classes.ipynb +194 -0
  148. braindecode-1.4.0/docs/auto_examples/model_building/plot_preprocessing_classes.rst +324 -0
  149. braindecode-1.4.0/docs/auto_examples/model_building/plot_regression.ipynb +212 -0
  150. braindecode-1.4.0/docs/auto_examples/model_building/plot_regression.rst +391 -0
  151. braindecode-1.4.0/docs/auto_examples/model_building/plot_train_in_pure_pytorch_and_pytorch_lightning.ipynb +250 -0
  152. braindecode-1.4.0/docs/auto_examples/model_building/plot_train_in_pure_pytorch_and_pytorch_lightning.rst +536 -0
  153. braindecode-1.4.0/docs/auto_examples/model_building/sg_execution_times.rst +64 -0
  154. braindecode-1.4.0/docs/auto_examples/sg_execution_times.rst +37 -0
  155. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/docs/cite.rst +42 -4
  156. {braindecode-1.3.2.dev184484862 → braindecode-1.4.0}/docs/conf.py +18 -13
  157. braindecode-1.4.0/docs/generated/activation/braindecode.modules.LogActivation.rst +130 -0
  158. braindecode-1.4.0/docs/generated/activation/braindecode.modules.SafeLog.rst +135 -0
  159. braindecode-1.4.0/docs/generated/attention/braindecode.modules.CAT.rst +130 -0
  160. braindecode-1.4.0/docs/generated/attention/braindecode.modules.CATLite.rst +130 -0
  161. braindecode-1.4.0/docs/generated/attention/braindecode.modules.CBAM.rst +130 -0
  162. braindecode-1.4.0/docs/generated/attention/braindecode.modules.ECA.rst +130 -0
  163. braindecode-1.4.0/docs/generated/attention/braindecode.modules.EncNet.rst +130 -0
  164. braindecode-1.4.0/docs/generated/attention/braindecode.modules.FCA.rst +137 -0
  165. braindecode-1.4.0/docs/generated/attention/braindecode.modules.GCT.rst +130 -0
  166. braindecode-1.4.0/docs/generated/attention/braindecode.modules.GSoP.rst +130 -0
  167. braindecode-1.4.0/docs/generated/attention/braindecode.modules.GatherExcite.rst +130 -0
  168. braindecode-1.4.0/docs/generated/attention/braindecode.modules.MultiHeadAttention.rst +130 -0
  169. braindecode-1.4.0/docs/generated/attention/braindecode.modules.SRM.rst +130 -0
  170. braindecode-1.4.0/docs/generated/attention/braindecode.modules.SqueezeAndExcitation.rst +130 -0
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  390. braindecode-1.4.0/docs/generated/filter/braindecode.modules.FilterBankLayer.rst +130 -0
  391. braindecode-1.4.0/docs/generated/filter/braindecode.modules.GeneralizedGaussianFilter.rst +144 -0
  392. braindecode-1.4.0/docs/generated/layers/braindecode.modules.Chomp1d.rst +135 -0
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  Metadata-Version: 2.4
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  Name: braindecode
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- Version: 1.3.2.dev184484862
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+ Version: 1.4.0
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  Summary: Deep learning software to decode EEG, ECG or MEG signals
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  Author-email: Robin Tibor Schirrmeister <robintibor@gmail.com>, Bruno Aristimunha Pinto <b.aristimunha@gmail.com>, Alexandre Gramfort <agramfort@meta.com>
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  Maintainer-email: Alexandre Gramfort <agramfort@meta.com>, Bruno Aristimunha Pinto <b.aristimunha@gmail.com>, Robin Tibor Schirrmeister <robintibor@gmail.com>
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- .. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.8214376.svg
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- :target: https://doi.org/10.5281/zenodo.8214376
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+ .. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.17699192.svg
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  Citing
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  ########
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- If you use Braindecode in scientific work, please cite the software using the Zenodo DOI
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- shown in the badge below:
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+ If you use Braindecode in scientific work, please cite the software using the global
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+ Zenodo DOI shown in the badge below:
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- :target: https://doi.org/10.5281/zenodo.8214376
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+ You can use the following BibTeX entry:
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+ .. code-block:: bibtex
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+ @software{braindecode,
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+ author = {Aristimunha, Bruno and
189
+ Guetschel, Pierre and
190
+ Wimpff, Martin and
191
+ Gemein, Lukas and
192
+ Rommel, Cedric and
193
+ Banville, Hubert and
194
+ Sliwowski, Maciej and
195
+ Wilson, Daniel and
196
+ Brandt, Simon and
197
+ Gnassounou, Théo and
198
+ Paillard, Joseph and
199
+ {Junqueira Lopes}, Bruna and
200
+ Sedlar, Sara and
201
+ Moreau, Thomas and
202
+ Chevallier, Sylvain and
203
+ Gramfort, Alexandre and
204
+ Schirrmeister, Robin Tibor},
205
+ title = {Braindecode: toolbox for decoding raw electrophysiological brain data
206
+ with deep learning models},
207
+ url = {https://github.com/braindecode/braindecode},
208
+ doi = {10.5281/zenodo.17699192},
209
+ publisher = {Zenodo},
210
+ license = {BSD-3-Clause},
211
+ }
212
+
183
213
  Additionally, we highly encourage you to cite the article that originally introduced the
184
214
  Braindecode library and has served as a foundational reference for many works on deep
185
215
  learning with EEG recordings. Please use the following reference:
@@ -1,5 +1,5 @@
1
- .. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.8214376.svg
2
- :target: https://doi.org/10.5281/zenodo.8214376
1
+ .. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.17699192.svg
2
+ :target: https://doi.org/10.5281/zenodo.17699192
3
3
  :alt: DOI
4
4
 
5
5
  .. image:: https://github.com/braindecode/braindecode/workflows/docs/badge.svg
@@ -87,13 +87,43 @@ https://github.com/braindecode/braindecode/blob/master/CONTRIBUTING.md
87
87
  Citing
88
88
  ########
89
89
 
90
- If you use Braindecode in scientific work, please cite the software using the Zenodo DOI
91
- shown in the badge below:
90
+ If you use Braindecode in scientific work, please cite the software using the global
91
+ Zenodo DOI shown in the badge below:
92
92
 
93
- .. image:: https://zenodo.org/badge/232335424.svg
94
- :target: https://doi.org/10.5281/zenodo.8214376
93
+ .. image:: https://zenodo.org/badge/DOI/10.5281/zenodo.17699192.svg
94
+ :target: https://doi.org/10.5281/zenodo.17699192
95
95
  :alt: DOI
96
96
 
97
+ You can use the following BibTeX entry:
98
+
99
+ .. code-block:: bibtex
100
+
101
+ @software{braindecode,
102
+ author = {Aristimunha, Bruno and
103
+ Guetschel, Pierre and
104
+ Wimpff, Martin and
105
+ Gemein, Lukas and
106
+ Rommel, Cedric and
107
+ Banville, Hubert and
108
+ Sliwowski, Maciej and
109
+ Wilson, Daniel and
110
+ Brandt, Simon and
111
+ Gnassounou, Théo and
112
+ Paillard, Joseph and
113
+ {Junqueira Lopes}, Bruna and
114
+ Sedlar, Sara and
115
+ Moreau, Thomas and
116
+ Chevallier, Sylvain and
117
+ Gramfort, Alexandre and
118
+ Schirrmeister, Robin Tibor},
119
+ title = {Braindecode: toolbox for decoding raw electrophysiological brain data
120
+ with deep learning models},
121
+ url = {https://github.com/braindecode/braindecode},
122
+ doi = {10.5281/zenodo.17699192},
123
+ publisher = {Zenodo},
124
+ license = {BSD-3-Clause},
125
+ }
126
+
97
127
  Additionally, we highly encourage you to cite the article that originally introduced the
98
128
  Braindecode library and has served as a foundational reference for many works on deep
99
129
  learning with EEG recordings. Please use the following reference:
@@ -2,6 +2,7 @@
2
2
  # Alexandre Gramfort <alexandre.gramfort@inria.fr>
3
3
  # Gustavo Rodrigues <gustavenrique01@gmail.com>
4
4
  # Bruna Lopes <brunajaflopes@gmail.com>
5
+ # Sarthak Tayal <sarthaktayal2@gmail.com>
5
6
  #
6
7
  # License: BSD (3-clause)
7
8
 
@@ -557,8 +558,9 @@ class BandstopFilter(Transform):
557
558
  f" Nyquist frequency ({nyq} Hz)."
558
559
  f" Falling back to max_freq = {nyq}."
559
560
  )
560
- assert bandwidth < max_freq, (
561
- f"`bandwidth` needs to be smaller than max_freq={max_freq}"
561
+ assert bandwidth < max_freq - 2, (
562
+ f"`bandwidth` needs to be smaller than max_freq - 2={max_freq - 2} "
563
+ f"to allow valid notch frequency sampling with 1 Hz transition bands."
562
564
  )
563
565
 
564
566
  # override bandwidth value when a magnitude is passed
@@ -600,8 +602,8 @@ class BandstopFilter(Transform):
600
602
 
601
603
  # Prevents transitions from going below 0 and above max_freq
602
604
  notched_freqs = self.rng.uniform(
603
- low=1 + 2 * self.bandwidth,
604
- high=self.max_freq - 1 - 2 * self.bandwidth,
605
+ low=1 + self.bandwidth / 2,
606
+ high=self.max_freq - 1 - self.bandwidth / 2,
605
607
  size=X.shape[0],
606
608
  )
607
609
  return {