braindecode 1.3.0.dev177628147__tar.gz → 1.3.1__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- braindecode-1.3.1/PKG-INFO +230 -0
- braindecode-1.3.1/README.rst +146 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/augmentation/__init__.py +5 -3
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/augmentation/base.py +8 -5
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/augmentation/functional.py +25 -22
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/augmentation/transforms.py +51 -42
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/classifier.py +11 -16
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/datasets/__init__.py +5 -3
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/datasets/base.py +17 -13
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/datasets/bbci.py +13 -14
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/datasets/bcicomp.py +4 -5
- braindecode-1.3.1/braindecode/datasets/bids/__init__.py +54 -0
- braindecode-1.3.0.dev177628147/braindecode/datasets/bids.py → braindecode-1.3.1/braindecode/datasets/bids/datasets.py +12 -18
- braindecode-1.3.1/braindecode/datasets/bids/format.py +717 -0
- {braindecode-1.3.0.dev177628147/braindecode/datasets → braindecode-1.3.1/braindecode/datasets/bids}/hub.py +375 -350
- braindecode-1.3.1/braindecode/datasets/bids/hub_format.py +810 -0
- braindecode-1.3.1/braindecode/datasets/bids/hub_io.py +197 -0
- {braindecode-1.3.0.dev177628147/braindecode/datasets → braindecode-1.3.1/braindecode/datasets/bids}/hub_validation.py +2 -1
- braindecode-1.3.0.dev177628147/braindecode/datasets/experimental.py → braindecode-1.3.1/braindecode/datasets/bids/iterable.py +8 -6
- braindecode-1.3.1/braindecode/datasets/chb_mit.py +163 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/datasets/mne.py +19 -19
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/datasets/moabb.py +10 -10
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/datasets/nmt.py +58 -56
- braindecode-1.3.1/braindecode/datasets/siena.py +162 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/datasets/sleep_physio_challe_18.py +3 -5
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/datasets/sleep_physionet.py +5 -5
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/datasets/tuh.py +21 -18
- braindecode-1.3.1/braindecode/datasets/utils.py +67 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/datasets/xy.py +10 -9
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/datautil/__init__.py +3 -3
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/datautil/serialization.py +22 -20
- braindecode-1.3.1/braindecode/datautil/util.py +154 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/eegneuralnet.py +22 -52
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/functional/functions.py +7 -10
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/functional/initialization.py +3 -2
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/__init__.py +5 -3
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/atcnet.py +43 -39
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/attentionbasenet.py +37 -41
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/attn_sleep.py +26 -24
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/base.py +6 -6
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/bendr.py +50 -26
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/biot.py +61 -30
- braindecode-1.3.1/braindecode/models/brainmodule.py +845 -0
- braindecode-1.3.1/braindecode/models/config.py +233 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/contrawr.py +5 -5
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/ctnet.py +35 -35
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/deep4.py +5 -5
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/deepsleepnet.py +7 -7
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/eegconformer.py +31 -26
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/eeginception_erp.py +2 -2
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/eeginception_mi.py +6 -6
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/eegitnet.py +5 -5
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/eegminer.py +1 -1
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/eegnet.py +3 -3
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/eegnex.py +2 -2
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/eegsimpleconv.py +2 -2
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/eegsym.py +7 -7
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/eegtcnet.py +6 -6
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/fbcnet.py +2 -2
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/fblightconvnet.py +3 -3
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/fbmsnet.py +3 -3
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/hybrid.py +2 -2
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/ifnet.py +5 -5
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/labram.py +70 -46
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/luna.py +60 -5
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/medformer.py +23 -21
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/msvtnet.py +15 -15
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/patchedtransformer.py +55 -55
- braindecode-1.3.1/braindecode/models/reve.py +843 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/sccnet.py +2 -2
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/shallow_fbcsp.py +5 -3
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/signal_jepa.py +39 -12
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/sinc_shallow.py +3 -4
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/sleep_stager_blanco_2020.py +2 -2
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/sleep_stager_chambon_2018.py +2 -2
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/sparcnet.py +8 -8
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/sstdpn.py +869 -869
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/summary.csv +19 -17
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/syncnet.py +2 -2
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/tcn.py +5 -5
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/tidnet.py +3 -3
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/tsinception.py +3 -3
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/usleep.py +7 -7
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/models/util.py +165 -14
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/modules/__init__.py +9 -1
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/modules/activation.py +29 -3
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/modules/attention.py +123 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/modules/blocks.py +53 -1
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/modules/convolution.py +53 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/modules/filter.py +31 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/modules/layers.py +84 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/modules/linear.py +22 -1
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/modules/stats.py +10 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/modules/util.py +9 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/modules/wrapper.py +17 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/preprocessing/preprocess.py +3 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/regressor.py +15 -18
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/samplers/ssl.py +1 -1
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/util.py +38 -28
- braindecode-1.3.1/braindecode/version.py +1 -0
- braindecode-1.3.1/braindecode.egg-info/PKG-INFO +230 -0
- braindecode-1.3.1/braindecode.egg-info/SOURCES.txt +675 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode.egg-info/requires.txt +20 -16
- braindecode-1.3.1/docs/_build/html/_downloads/090305d06248840b75133975e5121f41/plot_sleep_staging_chambon2018.ipynb +291 -0
- braindecode-1.3.1/docs/_build/html/_downloads/0ada35f18bb95235ba2842270483081f/plot_finetune_foundation_model.ipynb +237 -0
- braindecode-1.3.1/docs/_build/html/_downloads/0f2bf063e08b7d05b80e0004fcbbb6f9/benchmark_lazy_eager_loading.ipynb +183 -0
- braindecode-1.3.1/docs/_build/html/_downloads/137d0b161de96c88644fd65258fc20b5/tutorial_create_fixed_window_length.ipynb +190 -0
- braindecode-1.3.1/docs/_build/html/_downloads/1c6590d134fa0befda654e89aa55b2ac/plot_benchmark_preprocessing.ipynb +104 -0
- braindecode-1.3.1/docs/_build/html/_downloads/1d879df548fa18be8c23d9ca0dc008d4/plot_data_augmentation.ipynb +259 -0
- braindecode-1.3.1/docs/_build/html/_downloads/2466f8ec5c733d0bd65e187b45d875cc/plot_data_augmentation_search.ipynb +302 -0
- braindecode-1.3.1/docs/_build/html/_downloads/263464a28477cf8decb861ae6e2e9be7/plot_how_train_test_and_tune.ipynb +375 -0
- braindecode-1.3.1/docs/_build/html/_downloads/3862cafd7f0d815e434319ffe525afc8/plot_bcic_iv_2a_moabb_cropped.ipynb +226 -0
- braindecode-1.3.1/docs/_build/html/_downloads/408ca4ffd0ea1f76faa9ef602734ac94/plot_tuh_eeg_corpus.ipynb +187 -0
- braindecode-1.3.1/docs/_build/html/_downloads/5030717acb00990b394b83314b0797d9/plot_bids_dataset_example.ipynb +97 -0
- braindecode-1.3.1/docs/_build/html/_downloads/66ea18b3b9cf0802bbd32bb903ab554e/plot_temporal_generalization.ipynb +312 -0
- braindecode-1.3.1/docs/_build/html/_downloads/75a73c7d94f3a671fd3dec28f4031ead/plot_regression.ipynb +212 -0
- braindecode-1.3.1/docs/_build/html/_downloads/84fbcd59a346e5e56758285122dc69e2/plot_sleep_staging_eldele2021.ipynb +291 -0
- braindecode-1.3.1/docs/_build/html/_downloads/8616a7f968141825e56ab3e3d59be449/plot_tuh_discrete_multitarget.ipynb +169 -0
- braindecode-1.3.1/docs/_build/html/_downloads/8b5ba06718764b959e8dea1dd0bb97df/plot_sleep_staging_usleep.ipynb +255 -0
- braindecode-1.3.1/docs/_build/html/_downloads/91651c9d4fde110b4a53f5775a91acc5/plot_mne_dataset_example.ipynb +104 -0
- braindecode-1.3.1/docs/_build/html/_downloads/93fdea8cbadaf0e3afa2eb2be3ebc483/bcic_iv_4_ecog_trial.ipynb +376 -0
- braindecode-1.3.1/docs/_build/html/_downloads/9a4447462c3b255ba7e5ca212bbadd52/plot_bcic_iv_2a_moabb_trial.ipynb +271 -0
- braindecode-1.3.1/docs/_build/html/_downloads/9ecad1eb1db853df0ba20dbb97303c02/plot_exca_config.ipynb +439 -0
- braindecode-1.3.1/docs/_build/html/_downloads/a2f12129facb042643a99d4b9de1886d/bcic_iv_4_ecog_cropped.ipynb +345 -0
- braindecode-1.3.1/docs/_build/html/_downloads/a39e4245738e55e0eb7084c545ed05bc/plot_hyperparameter_tuning_with_scikit-learn.ipynb +257 -0
- braindecode-1.3.1/docs/_build/html/_downloads/a6249715d3c30cb41c4af85938cca008/plot_moabb_dataset_example.ipynb +140 -0
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- braindecode-1.3.1/docs/_build/html/_downloads/aa8426d97090e7b3062c4e4732c3214a/plot_relative_positioning.ipynb +266 -0
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- braindecode-1.3.1/docs/_build/html/_downloads/cb62940d13f700ed2b9e813705e9d437/plot_moabb_benchmark.ipynb +122 -0
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- braindecode-1.3.1/docs/_build/html/_downloads/f158ead3e4720f6f4685ff1d3f48dc15/plot_hub_integration.ipynb +201 -0
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- braindecode-1.3.1/docs/auto_examples/advanced_training/plot_temporal_generalization.rst +807 -0
- braindecode-1.3.1/docs/auto_examples/advanced_training/sg_execution_times.rst +58 -0
- braindecode-1.3.1/docs/auto_examples/applied_examples/bcic_iv_4_ecog_trial.ipynb +376 -0
- braindecode-1.3.1/docs/auto_examples/applied_examples/bcic_iv_4_ecog_trial.rst +581 -0
- braindecode-1.3.1/docs/auto_examples/applied_examples/index.rst +137 -0
- braindecode-1.3.1/docs/auto_examples/applied_examples/plot_sleep_staging_chambon2018.ipynb +291 -0
- braindecode-1.3.1/docs/auto_examples/applied_examples/plot_sleep_staging_chambon2018.rst +521 -0
- braindecode-1.3.1/docs/auto_examples/applied_examples/plot_sleep_staging_eldele2021.ipynb +291 -0
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- braindecode-1.3.1/docs/auto_examples/applied_examples/plot_sleep_staging_usleep.ipynb +255 -0
- braindecode-1.3.1/docs/auto_examples/applied_examples/plot_sleep_staging_usleep.rst +468 -0
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- braindecode-1.3.1/docs/auto_examples/applied_examples/sg_execution_times.rst +52 -0
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- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/LICENSE.txt +0 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/MANIFEST.in +0 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/NOTICE.txt +0 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/__init__.py +0 -0
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- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/preprocessing/__init__.py +0 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/preprocessing/eegprep_preprocess.py +0 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/preprocessing/mne_preprocess.py +0 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/preprocessing/util.py +0 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/preprocessing/windowers.py +0 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/samplers/__init__.py +0 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/samplers/base.py +0 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/training/__init__.py +0 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/training/callbacks.py +0 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/training/losses.py +0 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/training/scoring.py +0 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/visualization/__init__.py +0 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/visualization/confusion_matrices.py +0 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode/visualization/gradients.py +0 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode.egg-info/dependency_links.txt +0 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/braindecode.egg-info/top_level.txt +0 -0
- {braindecode-1.3.0.dev177628147 → braindecode-1.3.1}/docs/Makefile +0 -0
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Name: braindecode
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Version: 1.3.1
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Summary: Deep learning software to decode EEG, ECG or MEG signals
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Author-email: Robin Tibor Schirrmeister <robintibor@gmail.com>, Bruno Aristimunha Pinto <b.aristimunha@gmail.com>, Alexandre Gramfort <agramfort@meta.com>
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Maintainer-email: Alexandre Gramfort <agramfort@meta.com>, Bruno Aristimunha Pinto <b.aristimunha@gmail.com>, Robin Tibor Schirrmeister <robintibor@gmail.com>
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Keywords: python,deep-learning,neuroscience,pytorch,meg,eeg,neuroimaging,electroencephalography,magnetoencephalography,electrocorticography,ecog,electroencephalogram
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Braindecode
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Additional Components
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=====================
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Some components within this repository are licensed under the Creative Commons
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Attribution-NonCommercial 4.0 International License.
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Float between 0 and 1 setting the range over which the phase
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perturbation is uniformly sampled:
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[0, `phase_noise_magnitude` * 2 * `pi`].
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@@ -152,7 +152,7 @@ def ft_surrogate(
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Whether to sample phase perturbations independently for each channel or
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not. It is advised to set it to False when spatial information is
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important for the task, like in BCI.
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random_state: int | numpy.random.Generator, optional
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+
random_state : int | numpy.random.Generator, optional
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Used to draw the phase perturbation. Defaults to None.
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Returns
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@@ -289,10 +289,10 @@ def channels_shuffle(
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EEG input example or batch.
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y : torch.Tensor
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EEG labels for the example or batch.
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p_shuffle: float | None
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+
p_shuffle : float | None
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Float between 0 and 1 setting the probability of including the channel
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in the set of permutted channels.
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random_state: int | numpy.random.Generator, optional
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+
random_state : int | numpy.random.Generator, optional
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Seed to be used to instantiate numpy random number generator instance.
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Used to sample which channels to shuffle and to carry the shuffle.
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Defaults to None.
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@@ -335,7 +335,7 @@ def gaussian_noise(
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EEG labels for the example or batch.
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std : float
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Standard deviation to use for the additive noise.
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-
random_state: int | numpy.random.Generator, optional
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+
random_state : int | numpy.random.Generator, optional
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Seed to be used to instantiate numpy random number generator instance.
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Defaults to None.
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@@ -468,7 +468,8 @@ def bandstop_filter(
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bandwidth: float,
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freqs_to_notch: npt.ArrayLike | None,
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) -> tuple[torch.Tensor, torch.Tensor]:
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471
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-
"""Apply a band-stop filter with desired bandwidth at the desired frequency
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+
"""Apply a band-stop filter with desired bandwidth at the desired frequency.
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472
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+
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position.
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474
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Suggested e.g. in [1]_ and [2]_
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@@ -620,6 +621,7 @@ def _torch_legval(
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620
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) -> torch.Tensor:
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"""
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Evaluate a Legendre series at points x.
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+
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If `c` is of length `n + 1`, this function returns the value:
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.. math:: p(x) = c_0 * L_0(x) + c_1 * L_1(x) + ... + c_n * L_n(x)
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The parameter `x` is converted to an array only if it is a tuple or a
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@@ -805,12 +807,6 @@ def _torch_make_interpolation_matrix(
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805
807
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The interpolation matrix that maps good signals to the location
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806
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of bad signals.
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807
809
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808
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-
References
|
|
809
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-
----------
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810
|
-
[1] Perrin, F., Pernier, J., Bertrand, O. and Echallier, JF. (1989).
|
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811
|
-
Spherical splines for scalp potential and current density mapping.
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812
|
-
Electroencephalography Clinical Neurophysiology, Feb; 72(2):184-7.
|
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813
|
-
|
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814
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|
Notes
|
|
815
811
|
-----
|
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816
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|
Code copied and modified from MNE-Python:
|
|
@@ -841,6 +837,12 @@ def _torch_make_interpolation_matrix(
|
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841
837
|
LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY
|
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842
838
|
OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH
|
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843
839
|
DAMAGE.
|
|
840
|
+
|
|
841
|
+
References
|
|
842
|
+
----------
|
|
843
|
+
[1] Perrin, F., Pernier, J., Bertrand, O. and Echallier, JF. (1989).
|
|
844
|
+
Spherical splines for scalp potential and current density mapping.
|
|
845
|
+
Electroencephalography Clinical Neurophysiology, Feb; 72(2):184-7.
|
|
844
846
|
"""
|
|
845
847
|
pos_from = pos_from.clone()
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846
848
|
pos_to = pos_to.clone()
|
|
@@ -968,7 +970,8 @@ def sensors_rotation(
|
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|
968
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angles: npt.ArrayLike,
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|
969
971
|
spherical_splines: bool,
|
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970
972
|
) -> tuple[torch.Tensor, torch.Tensor]:
|
|
971
|
-
"""Interpolates EEG signals over sensors rotated around the desired axis
|
|
973
|
+
"""Interpolates EEG signals over sensors rotated around the desired axis.
|
|
974
|
+
|
|
972
975
|
with the desired angle.
|
|
973
976
|
|
|
974
977
|
Suggested in [1]_
|
|
@@ -1027,7 +1030,7 @@ def mixup(
|
|
|
1027
1030
|
lam : torch.Tensor
|
|
1028
1031
|
Values between 0 and 1 setting the linear interpolation between
|
|
1029
1032
|
examples.
|
|
1030
|
-
idx_perm: torch.Tensor
|
|
1033
|
+
idx_perm : torch.Tensor
|
|
1031
1034
|
Permuted indices of example that are mixed into original examples.
|
|
1032
1035
|
|
|
1033
1036
|
Returns
|
|
@@ -1080,18 +1083,20 @@ def segmentation_reconstruction(
|
|
|
1080
1083
|
EEG labels for the example or batch.
|
|
1081
1084
|
n_segments : int
|
|
1082
1085
|
Number of segments to use in the batch.
|
|
1083
|
-
data_classes: list[tuple[int, torch.Tensor]]
|
|
1086
|
+
data_classes : list[tuple[int, torch.Tensor]]
|
|
1084
1087
|
List of tuples. Each tuple contains the class index and the corresponding EEG data.
|
|
1085
|
-
rand_indices: array-like
|
|
1088
|
+
rand_indices : array-like
|
|
1086
1089
|
Array of indices that indicates which trial to use in each segment.
|
|
1087
|
-
idx_shuffle: array-like
|
|
1090
|
+
idx_shuffle : array-like
|
|
1088
1091
|
Array of indices to shuffle the new generated trials.
|
|
1092
|
+
|
|
1089
1093
|
Returns
|
|
1090
1094
|
-------
|
|
1091
1095
|
torch.Tensor
|
|
1092
1096
|
Transformed inputs.
|
|
1093
1097
|
torch.Tensor
|
|
1094
1098
|
Transformed labels.
|
|
1099
|
+
|
|
1095
1100
|
References
|
|
1096
1101
|
----------
|
|
1097
1102
|
.. [1] Lotte, F. (2015). Signal processing approaches to minimize or
|
|
@@ -1145,7 +1150,7 @@ def mask_encoding(
|
|
|
1145
1150
|
segment_length: int,
|
|
1146
1151
|
n_segments: int,
|
|
1147
1152
|
) -> tuple[torch.Tensor, torch.Tensor]:
|
|
1148
|
-
"""Mark encoding from Ding et al
|
|
1153
|
+
"""Mark encoding from Ding et al (2024) from [ding2024]_.
|
|
1149
1154
|
|
|
1150
1155
|
Replaces a contiguous part (or parts) of all channels by zeros
|
|
1151
1156
|
(if more than one segment, it may overlap).
|
|
@@ -1212,7 +1217,7 @@ def channels_rereference(
|
|
|
1212
1217
|
EEG input example or batch.
|
|
1213
1218
|
y : torch.Tensor
|
|
1214
1219
|
EEG labels for the example or batch.
|
|
1215
|
-
random_state: int | numpy.random.Generator, optional
|
|
1220
|
+
random_state : int | numpy.random.Generator, optional
|
|
1216
1221
|
Seed to be used to instantiate numpy random number generator instance.
|
|
1217
1222
|
Defaults to None.
|
|
1218
1223
|
|
|
@@ -1229,7 +1234,6 @@ def channels_rereference(
|
|
|
1229
1234
|
Representation Learning for Electroencephalogram Classification. Proceedings
|
|
1230
1235
|
of the Machine Learning for Health NeurIPS Workshop, in Proceedings of Machine
|
|
1231
1236
|
Learning Research 136:238-253
|
|
1232
|
-
|
|
1233
1237
|
"""
|
|
1234
1238
|
|
|
1235
1239
|
rng = check_random_state(random_state)
|
|
@@ -1262,7 +1266,7 @@ def amplitude_scale(
|
|
|
1262
1266
|
EEG labels for the example or batch.
|
|
1263
1267
|
scale : tuple of floats
|
|
1264
1268
|
Interval from which ypu sample the scaling value
|
|
1265
|
-
random_state: int | numpy.random.Generator, optional
|
|
1269
|
+
random_state : int | numpy.random.Generator, optional
|
|
1266
1270
|
Seed to be used to instantiate numpy random number generator instance.
|
|
1267
1271
|
Defaults to None.
|
|
1268
1272
|
|
|
@@ -1279,7 +1283,6 @@ def amplitude_scale(
|
|
|
1279
1283
|
Representation Learning for Electroencephalogram Classification. Proceedings
|
|
1280
1284
|
of the Machine Learning for Health NeurIPS Workshop, in Proceedings of Machine
|
|
1281
1285
|
Learning Research 136:238-253
|
|
1282
|
-
|
|
1283
1286
|
"""
|
|
1284
1287
|
|
|
1285
1288
|
rng = torch.Generator()
|