braindecode 0.5__tar.gz → 0.6__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (270) hide show
  1. Braindecode-0.6/.circleci/artifact_path +1 -0
  2. Braindecode-0.6/.circleci/config.yml +56 -0
  3. Braindecode-0.6/.github/workflows/flake8.yaml +23 -0
  4. Braindecode-0.6/.github/workflows/link-to-doc.yaml +13 -0
  5. Braindecode-0.6/.github/workflows/push-artifact-to-circleci.yml +47 -0
  6. Braindecode-0.6/.github/workflows/tests-and-docs.yml +98 -0
  7. Braindecode-0.6/.gitignore +63 -0
  8. {Braindecode-0.5 → Braindecode-0.6}/Braindecode.egg-info/PKG-INFO +14 -13
  9. Braindecode-0.6/Braindecode.egg-info/SOURCES.txt +228 -0
  10. {Braindecode-0.5 → Braindecode-0.6}/Braindecode.egg-info/top_level.txt +1 -0
  11. Braindecode-0.6/CONTRIBUTING.md +265 -0
  12. {Braindecode-0.5 → Braindecode-0.6}/PKG-INFO +14 -13
  13. {Braindecode-0.5 → Braindecode-0.6}/README.rst +13 -12
  14. Braindecode-0.6/bandit.yml +1 -0
  15. Braindecode-0.6/braindecode/augmentation/__init__.py +23 -0
  16. Braindecode-0.6/braindecode/augmentation/base.py +188 -0
  17. Braindecode-0.6/braindecode/augmentation/functional.py +997 -0
  18. Braindecode-0.6/braindecode/augmentation/transforms.py +1097 -0
  19. Braindecode-0.6/braindecode/classifier.py +321 -0
  20. {Braindecode-0.5 → Braindecode-0.6}/braindecode/datasets/__init__.py +5 -2
  21. Braindecode-0.6/braindecode/datasets/base.py +613 -0
  22. {Braindecode-0.5 → Braindecode-0.6}/braindecode/datasets/bbci.py +64 -29
  23. Braindecode-0.6/braindecode/datasets/bcicomp.py +179 -0
  24. {Braindecode-0.5 → Braindecode-0.6}/braindecode/datasets/mne.py +20 -5
  25. {Braindecode-0.5 → Braindecode-0.6}/braindecode/datasets/moabb.py +55 -16
  26. Braindecode-0.6/braindecode/datasets/sleep_physionet.py +108 -0
  27. Braindecode-0.6/braindecode/datasets/tuh.py +306 -0
  28. {Braindecode-0.5 → Braindecode-0.6}/braindecode/datasets/xy.py +17 -14
  29. Braindecode-0.6/braindecode/datautil/__init__.py +33 -0
  30. Braindecode-0.6/braindecode/datautil/mne.py +9 -0
  31. Braindecode-0.6/braindecode/datautil/preprocess.py +12 -0
  32. Braindecode-0.6/braindecode/datautil/serialization.py +262 -0
  33. {Braindecode-0.5 → Braindecode-0.6}/braindecode/datautil/util.py +6 -2
  34. Braindecode-0.6/braindecode/datautil/windowers.py +6 -0
  35. Braindecode-0.6/braindecode/datautil/xy.py +9 -0
  36. Braindecode-0.6/braindecode/models/__init__.py +17 -0
  37. {Braindecode-0.5 → Braindecode-0.6}/braindecode/models/deep4.py +19 -8
  38. {Braindecode-0.5 → Braindecode-0.6}/braindecode/models/eegnet.py +27 -9
  39. {Braindecode-0.5 → Braindecode-0.6}/braindecode/models/eegresnet.py +19 -15
  40. {Braindecode-0.5 → Braindecode-0.6}/braindecode/models/functions.py +4 -0
  41. {Braindecode-0.5 → Braindecode-0.6}/braindecode/models/hybrid.py +18 -6
  42. {Braindecode-0.5 → Braindecode-0.6}/braindecode/models/modules.py +48 -7
  43. {Braindecode-0.5 → Braindecode-0.6}/braindecode/models/shallow_fbcsp.py +14 -6
  44. Braindecode-0.6/braindecode/models/sleep_stager_blanco_2020.py +124 -0
  45. Braindecode-0.6/braindecode/models/sleep_stager_chambon_2018.py +122 -0
  46. Braindecode-0.6/braindecode/models/sleep_stager_eldele_2021.py +395 -0
  47. Braindecode-0.6/braindecode/models/tcn.py +155 -0
  48. Braindecode-0.6/braindecode/models/tidnet.py +262 -0
  49. Braindecode-0.6/braindecode/models/usleep.py +290 -0
  50. Braindecode-0.6/braindecode/models/util.py +139 -0
  51. Braindecode-0.6/braindecode/preprocessing/__init__.py +5 -0
  52. Braindecode-0.6/braindecode/preprocessing/preprocess.py +487 -0
  53. Braindecode-0.6/braindecode/preprocessing/windowers.py +628 -0
  54. Braindecode-0.6/braindecode/regressor.py +309 -0
  55. Braindecode-0.6/braindecode/samplers/__init__.py +5 -0
  56. Braindecode-0.6/braindecode/samplers/base.py +276 -0
  57. Braindecode-0.6/braindecode/samplers/ssl.py +118 -0
  58. Braindecode-0.6/braindecode/training/__init__.py +8 -0
  59. {Braindecode-0.5 → Braindecode-0.6}/braindecode/training/callbacks.py +5 -1
  60. Braindecode-0.6/braindecode/training/losses.py +110 -0
  61. {Braindecode-0.5 → Braindecode-0.6}/braindecode/training/scoring.py +199 -27
  62. {Braindecode-0.5 → Braindecode-0.6}/braindecode/util.py +95 -11
  63. Braindecode-0.6/braindecode/version.py +1 -0
  64. Braindecode-0.6/braindecode/visualization/__init__.py +6 -0
  65. Braindecode-0.6/braindecode/visualization/confusion_matrices.py +245 -0
  66. {Braindecode-0.5 → Braindecode-0.6}/braindecode/visualization/gradients.py +18 -7
  67. Braindecode-0.6/codecov.yml +14 -0
  68. Braindecode-0.6/docs/.ipynb_checkpoints/index-checkpoint.rst +129 -0
  69. {Braindecode-0.5 → Braindecode-0.6}/docs/Makefile +5 -0
  70. Braindecode-0.6/docs/_build/html/_downloads/0b5ce52c808a6ba6c8e9d78fa3fdb68a/plot_color.ipynb +68 -0
  71. {Braindecode-0.5 → Braindecode-0.6}/docs/_build/html/_downloads/1224801107d6c3b138edf8ee33de0561/plot_bcic_iv_2a_moabb_cropped.ipynb +15 -15
  72. {Braindecode-0.5/docs/auto_examples → Braindecode-0.6/docs/_build/html/_downloads/176a7695926ccfe061692c4af12b673d}/plot_dataset_example.ipynb +15 -15
  73. {Braindecode-0.5/docs/auto_examples → Braindecode-0.6/docs/_build/html/_downloads/25408d8d92a873e370d4750ba414b84a}/benchmark_lazy_eager_loading.ipynb +7 -7
  74. Braindecode-0.6/docs/_build/html/_downloads/3e0455c88adcaa2571230abb981020db/plot_relative_positioning.ipynb +375 -0
  75. Braindecode-0.6/docs/_build/html/_downloads/4855a497085ac8dc60a648bf4a72d647/plot_load_save_datasets.ipynb +180 -0
  76. {Braindecode-0.5 → Braindecode-0.6}/docs/_build/html/_downloads/49b1f19a86467aeaf762a1550583a845/plot_custom_dataset_example.ipynb +39 -10
  77. Braindecode-0.6/docs/_build/html/_downloads/5bafba0488197e377d459780399abb29/plot_sleep_staging.ipynb +293 -0
  78. {Braindecode-0.5/docs/auto_examples → Braindecode-0.6/docs/_build/html/_downloads/748680401b0360239d00624375dd9587}/plot_bcic_iv_2a_moabb_trial.ipynb +16 -16
  79. Braindecode-0.6/docs/_build/html/_downloads/8c06a965e21b52d199f98636388aaa21/tuh_eeg_corpus.ipynb +180 -0
  80. Braindecode-0.6/docs/_build/html/_downloads/9c64c2c15907a661b1fe2d7dd209a434/plot_regression.ipynb +54 -0
  81. Braindecode-0.6/docs/_build/html/_downloads/9d9b9ce2b20299db6129837e390cf198/plot_lukas.ipynb +198 -0
  82. Braindecode-0.6/docs/_build/html/_downloads/b38e40c9ee338673865922575e84fd7f/plot_split_dataset.ipynb +184 -0
  83. {Braindecode-0.5/docs/auto_examples → Braindecode-0.6/docs/_build/html/_downloads/e42b5bd97033be02521040b0d5ee21c3}/plot_mne_dataset_example.ipynb +5 -5
  84. Braindecode-0.6/docs/_static/cropped_explanation.png +0 -0
  85. Braindecode-0.6/docs/_static/trialwise_explanation.png +0 -0
  86. Braindecode-0.6/docs/_templates/autosummary/class.rst +37 -0
  87. Braindecode-0.6/docs/api.rst +235 -0
  88. {Braindecode-0.5/docs/_build/html/_downloads/25408d8d92a873e370d4750ba414b84a → Braindecode-0.6/docs/auto_examples}/benchmark_lazy_eager_loading.ipynb +7 -7
  89. {Braindecode-0.5 → Braindecode-0.6}/docs/auto_examples/benchmark_lazy_eager_loading.rst +49 -10
  90. Braindecode-0.6/docs/auto_examples/index.rst +332 -0
  91. {Braindecode-0.5 → Braindecode-0.6}/docs/auto_examples/plot_bcic_iv_2a_moabb_cropped.ipynb +15 -15
  92. {Braindecode-0.5 → Braindecode-0.6}/docs/auto_examples/plot_bcic_iv_2a_moabb_cropped.rst +93 -67
  93. {Braindecode-0.5/docs/_build/html/_downloads/748680401b0360239d00624375dd9587 → Braindecode-0.6/docs/auto_examples}/plot_bcic_iv_2a_moabb_trial.ipynb +16 -16
  94. Braindecode-0.6/docs/auto_examples/plot_bcic_iv_2a_moabb_trial.rst +764 -0
  95. Braindecode-0.6/docs/auto_examples/plot_color.ipynb +68 -0
  96. Braindecode-0.6/docs/auto_examples/plot_color.rst +141 -0
  97. {Braindecode-0.5 → Braindecode-0.6}/docs/auto_examples/plot_custom_dataset_example.ipynb +39 -10
  98. Braindecode-0.6/docs/auto_examples/plot_custom_dataset_example.rst +375 -0
  99. {Braindecode-0.5/docs/_build/html/_downloads/176a7695926ccfe061692c4af12b673d → Braindecode-0.6/docs/auto_examples}/plot_dataset_example.ipynb +15 -15
  100. Braindecode-0.6/docs/auto_examples/plot_dataset_example.rst +938 -0
  101. Braindecode-0.6/docs/auto_examples/plot_load_save_datasets.ipynb +180 -0
  102. Braindecode-0.6/docs/auto_examples/plot_load_save_datasets.rst +530 -0
  103. Braindecode-0.6/docs/auto_examples/plot_lukas.ipynb +198 -0
  104. Braindecode-0.6/docs/auto_examples/plot_lukas.rst +487 -0
  105. {Braindecode-0.5/docs/_build/html/_downloads/e42b5bd97033be02521040b0d5ee21c3 → Braindecode-0.6/docs/auto_examples}/plot_mne_dataset_example.ipynb +5 -5
  106. Braindecode-0.6/docs/auto_examples/plot_mne_dataset_example.rst +414 -0
  107. Braindecode-0.6/docs/auto_examples/plot_regression.ipynb +54 -0
  108. {Braindecode-0.5 → Braindecode-0.6}/docs/auto_examples/plot_regression.rst +108 -15
  109. Braindecode-0.6/docs/auto_examples/plot_relative_positioning.ipynb +375 -0
  110. Braindecode-0.6/docs/auto_examples/plot_relative_positioning.rst +1005 -0
  111. Braindecode-0.6/docs/auto_examples/plot_sleep_staging.ipynb +293 -0
  112. Braindecode-0.6/docs/auto_examples/plot_sleep_staging.rst +672 -0
  113. Braindecode-0.6/docs/auto_examples/plot_split_dataset.ipynb +184 -0
  114. Braindecode-0.6/docs/auto_examples/plot_split_dataset.rst +664 -0
  115. Braindecode-0.6/docs/auto_examples/sg_execution_times.rst +38 -0
  116. Braindecode-0.6/docs/auto_examples/tuh_eeg_corpus.ipynb +180 -0
  117. Braindecode-0.6/docs/auto_examples/tuh_eeg_corpus.rst +353 -0
  118. {Braindecode-0.5 → Braindecode-0.6}/docs/conf.py +10 -4
  119. {Braindecode-0.5 → Braindecode-0.6}/docs/generated/braindecode.classifier.EEGClassifier.rst +1 -1
  120. {Braindecode-0.5 → Braindecode-0.6}/docs/generated/braindecode.datasets.BaseConcatDataset.rst +1 -1
  121. {Braindecode-0.5 → Braindecode-0.6}/docs/generated/braindecode.datasets.BaseDataset.rst +1 -1
  122. {Braindecode-0.5 → Braindecode-0.6}/docs/generated/braindecode.datasets.MOABBDataset.rst +1 -1
  123. Braindecode-0.6/docs/generated/braindecode.datasets.SleepPhysionet.rst +14 -0
  124. Braindecode-0.6/docs/generated/braindecode.datasets.TUH.rst +14 -0
  125. Braindecode-0.6/docs/generated/braindecode.datasets.TUHAbnormal.rst +14 -0
  126. {Braindecode-0.5 → Braindecode-0.6}/docs/generated/braindecode.datasets.WindowsDataset.rst +1 -1
  127. {Braindecode-0.5 → Braindecode-0.6}/docs/generated/braindecode.datasets.create_from_X_y.rst +1 -1
  128. {Braindecode-0.5 → Braindecode-0.6}/docs/generated/braindecode.datasets.create_from_mne_epochs.rst +1 -1
  129. {Braindecode-0.5 → Braindecode-0.6}/docs/generated/braindecode.datasets.create_from_mne_raw.rst +1 -1
  130. Braindecode-0.6/docs/generated/braindecode.datautil.load_concat_dataset.rst +12 -0
  131. Braindecode-0.6/docs/generated/braindecode.datautil.save_concat_dataset.rst +12 -0
  132. {Braindecode-0.5 → Braindecode-0.6}/docs/generated/braindecode.models.Deep4Net.rst +1 -1
  133. {Braindecode-0.5 → Braindecode-0.6}/docs/generated/braindecode.models.EEGNetv1.rst +1 -1
  134. {Braindecode-0.5 → Braindecode-0.6}/docs/generated/braindecode.models.EEGNetv4.rst +1 -1
  135. {Braindecode-0.5 → Braindecode-0.6}/docs/generated/braindecode.models.EEGResNet.rst +1 -1
  136. {Braindecode-0.5 → Braindecode-0.6}/docs/generated/braindecode.models.HybridNet.rst +1 -1
  137. {Braindecode-0.5 → Braindecode-0.6}/docs/generated/braindecode.models.ShallowFBCSPNet.rst +1 -1
  138. Braindecode-0.6/docs/generated/braindecode.models.SleepStagerChambon2018.rst +14 -0
  139. Braindecode-0.6/docs/generated/braindecode.models.TCN.rst +14 -0
  140. Braindecode-0.6/docs/generated/braindecode.models.TIDNet.rst +14 -0
  141. Braindecode-0.6/docs/generated/braindecode.models.get_output_shape.rst +12 -0
  142. Braindecode-0.6/docs/generated/braindecode.preprocessing.Preprocessor.rst +14 -0
  143. Braindecode-0.6/docs/generated/braindecode.preprocessing.create_fixed_length_windows.rst +12 -0
  144. Braindecode-0.6/docs/generated/braindecode.preprocessing.create_windows_from_events.rst +12 -0
  145. Braindecode-0.6/docs/generated/braindecode.preprocessing.exponential_moving_demean.rst +12 -0
  146. Braindecode-0.6/docs/generated/braindecode.preprocessing.exponential_moving_standardize.rst +12 -0
  147. Braindecode-0.6/docs/generated/braindecode.preprocessing.filterbank.rst +12 -0
  148. Braindecode-0.6/docs/generated/braindecode.preprocessing.preprocess.rst +12 -0
  149. Braindecode-0.6/docs/generated/braindecode.preprocessing.scale.rst +12 -0
  150. Braindecode-0.6/docs/generated/braindecode.preprocessing.zscore.rst +12 -0
  151. {Braindecode-0.5 → Braindecode-0.6}/docs/generated/braindecode.regressor.EEGRegressor.rst +1 -1
  152. Braindecode-0.6/docs/generated/braindecode.samplers.RecordingSampler.rst +14 -0
  153. Braindecode-0.6/docs/generated/braindecode.samplers.RelativePositioningSampler.rst +14 -0
  154. {Braindecode-0.5 → Braindecode-0.6}/docs/generated/braindecode.training.CroppedLoss.rst +1 -1
  155. {Braindecode-0.5 → Braindecode-0.6}/docs/generated/braindecode.training.CroppedTrialEpochScoring.rst +1 -1
  156. {Braindecode-0.5 → Braindecode-0.6}/docs/generated/braindecode.training.PostEpochTrainScoring.rst +1 -1
  157. {Braindecode-0.5 → Braindecode-0.6}/docs/generated/braindecode.training.trial_preds_from_window_preds.rst +1 -1
  158. {Braindecode-0.5 → Braindecode-0.6}/docs/generated/braindecode.util.set_random_seeds.rst +1 -1
  159. Braindecode-0.6/docs/generated/braindecode.visualization.compute_amplitude_gradients.rst +12 -0
  160. {Braindecode-0.5 → Braindecode-0.6}/docs/index.rst +15 -5
  161. Braindecode-0.6/docs/requirements.txt +6 -0
  162. Braindecode-0.6/docs/sphinxext/gh_substitutions.py +30 -0
  163. Braindecode-0.6/docs/whats_new.rst +121 -0
  164. Braindecode-0.6/environment.yml +22 -0
  165. Braindecode-0.6/examples/README.rst +2 -0
  166. Braindecode-0.6/examples/benchmark_lazy_eager_loading.py +319 -0
  167. Braindecode-0.6/examples/plot_bcic_iv_2a_moabb_cropped.py +348 -0
  168. Braindecode-0.6/examples/plot_bcic_iv_2a_moabb_trial.py +317 -0
  169. Braindecode-0.6/examples/plot_bcic_iv_4_ecog_cropped.py +435 -0
  170. Braindecode-0.6/examples/plot_bcic_iv_4_ecog_trial.py +394 -0
  171. Braindecode-0.6/examples/plot_benchmark_preprocessing.py +167 -0
  172. Braindecode-0.6/examples/plot_custom_dataset_example.py +64 -0
  173. Braindecode-0.6/examples/plot_data_augmentation.py +275 -0
  174. Braindecode-0.6/examples/plot_dataset_example.py +140 -0
  175. Braindecode-0.6/examples/plot_load_save_datasets.py +97 -0
  176. Braindecode-0.6/examples/plot_mne_dataset_example.py +60 -0
  177. Braindecode-0.6/examples/plot_regression.py +140 -0
  178. Braindecode-0.6/examples/plot_relative_positioning.py +533 -0
  179. Braindecode-0.6/examples/plot_sleep_staging_usleep.py +316 -0
  180. Braindecode-0.6/examples/plot_split_dataset.py +74 -0
  181. Braindecode-0.6/examples/plot_tuh_discrete_multitarget.py +101 -0
  182. Braindecode-0.6/examples/plot_tuh_eeg_corpus.py +243 -0
  183. Braindecode-0.6/requirements.txt +8 -0
  184. {Braindecode-0.5 → Braindecode-0.6}/setup.cfg +5 -2
  185. {Braindecode-0.5 → Braindecode-0.6}/setup.py +1 -1
  186. Braindecode-0.6/test/acceptance_tests/test_cropped_decoding.py +172 -0
  187. Braindecode-0.6/test/acceptance_tests/test_eeg_classifier.py +260 -0
  188. Braindecode-0.6/test/acceptance_tests/test_model_architectures.py +54 -0
  189. Braindecode-0.6/test/acceptance_tests/test_trialwise_decoding.py +168 -0
  190. Braindecode-0.6/test/acceptance_tests/test_variable_length_trials_decoding.py +106 -0
  191. Braindecode-0.6/test/unit_tests/__init__.py +0 -0
  192. Braindecode-0.6/test/unit_tests/augmentation/__init__.py +0 -0
  193. Braindecode-0.6/test/unit_tests/augmentation/conftest.py +56 -0
  194. Braindecode-0.6/test/unit_tests/augmentation/test_base.py +175 -0
  195. Braindecode-0.6/test/unit_tests/augmentation/test_transforms.py +666 -0
  196. Braindecode-0.6/test/unit_tests/datasets/__init__.py +0 -0
  197. Braindecode-0.6/test/unit_tests/datasets/test_bcicomp.py +116 -0
  198. Braindecode-0.6/test/unit_tests/datasets/test_dataset.py +403 -0
  199. Braindecode-0.6/test/unit_tests/datasets/test_mne.py +146 -0
  200. Braindecode-0.6/test/unit_tests/datasets/test_sleep_physionet.py +46 -0
  201. Braindecode-0.6/test/unit_tests/datasets/test_tuh.py +177 -0
  202. Braindecode-0.6/test/unit_tests/datasets/test_xy.py +33 -0
  203. Braindecode-0.6/test/unit_tests/datautil/__init__.py +0 -0
  204. Braindecode-0.6/test/unit_tests/datautil/test_serialization.py +337 -0
  205. Braindecode-0.6/test/unit_tests/models/__init__.py +0 -0
  206. Braindecode-0.6/test/unit_tests/models/test_models.py +281 -0
  207. Braindecode-0.6/test/unit_tests/models/test_modules.py +30 -0
  208. Braindecode-0.6/test/unit_tests/models/test_util.py +76 -0
  209. Braindecode-0.6/test/unit_tests/preprocessing/__init__.py +0 -0
  210. Braindecode-0.6/test/unit_tests/preprocessing/test_preprocess.py +452 -0
  211. Braindecode-0.6/test/unit_tests/preprocessing/test_windowers.py +651 -0
  212. Braindecode-0.6/test/unit_tests/samplers/test_samplers.py +203 -0
  213. Braindecode-0.6/test/unit_tests/test_eeg_classifier.py +148 -0
  214. Braindecode-0.6/test/unit_tests/test_eeg_regressor.py +148 -0
  215. Braindecode-0.6/test/unit_tests/test_util.py +46 -0
  216. Braindecode-0.6/test/unit_tests/training/__init__.py +0 -0
  217. Braindecode-0.6/test/unit_tests/training/test_losses.py +73 -0
  218. Braindecode-0.6/test/unit_tests/training/test_scoring.py +431 -0
  219. Braindecode-0.6/test/unit_tests/visualization/__init__.py +0 -0
  220. Braindecode-0.6/test/unit_tests/visualization/test_gradients.py +37 -0
  221. Braindecode-0.5/Braindecode.egg-info/SOURCES.txt +0 -110
  222. Braindecode-0.5/braindecode/classifier.py +0 -188
  223. Braindecode-0.5/braindecode/datasets/base.py +0 -140
  224. Braindecode-0.5/braindecode/datasets/tuh.py +0 -113
  225. Braindecode-0.5/braindecode/datautil/__init__.py +0 -6
  226. Braindecode-0.5/braindecode/datautil/preprocess.py +0 -253
  227. Braindecode-0.5/braindecode/datautil/windowers.py +0 -315
  228. Braindecode-0.5/braindecode/experiments/bcic_iv_2a/config.py +0 -119
  229. Braindecode-0.5/braindecode/experiments/bcic_iv_2a/run.py +0 -230
  230. Braindecode-0.5/braindecode/models/__init__.py +0 -9
  231. Braindecode-0.5/braindecode/models/util.py +0 -66
  232. Braindecode-0.5/braindecode/regressor.py +0 -187
  233. Braindecode-0.5/braindecode/training/__init__.py +0 -8
  234. Braindecode-0.5/braindecode/training/losses.py +0 -15
  235. Braindecode-0.5/braindecode/version.py +0 -1
  236. Braindecode-0.5/braindecode/visualization/__init__.py +0 -3
  237. Braindecode-0.5/docs/_build/html/_downloads/9c64c2c15907a661b1fe2d7dd209a434/plot_regression.ipynb +0 -54
  238. Braindecode-0.5/docs/_templates/autosummary/class.rst +0 -14
  239. Braindecode-0.5/docs/api.rst +0 -125
  240. Braindecode-0.5/docs/auto_examples/index.rst +0 -178
  241. Braindecode-0.5/docs/auto_examples/plot_bcic_iv_2a_moabb_trial.rst +0 -441
  242. Braindecode-0.5/docs/auto_examples/plot_custom_dataset_example.rst +0 -130
  243. Braindecode-0.5/docs/auto_examples/plot_dataset_example.rst +0 -411
  244. Braindecode-0.5/docs/auto_examples/plot_mne_dataset_example.rst +0 -139
  245. Braindecode-0.5/docs/auto_examples/plot_regression.ipynb +0 -54
  246. Braindecode-0.5/docs/auto_examples/sg_execution_times.rst +0 -24
  247. Braindecode-0.5/docs/generated/braindecode.datautil.create_fixed_length_windows.rst +0 -12
  248. Braindecode-0.5/docs/generated/braindecode.datautil.create_windows_from_events.rst +0 -12
  249. Braindecode-0.5/docs/generated/braindecode.datautil.exponential_moving_demean.rst +0 -12
  250. Braindecode-0.5/docs/generated/braindecode.datautil.exponential_moving_standardize.rst +0 -12
  251. Braindecode-0.5/docs/generated/braindecode.datautil.scale.rst +0 -12
  252. Braindecode-0.5/docs/generated/braindecode.datautil.zscore.rst +0 -12
  253. Braindecode-0.5/docs/notebooks/Untitled.ipynb +0 -334
  254. Braindecode-0.5/docs/source/braindecode.datasets.rst +0 -51
  255. Braindecode-0.5/docs/source/braindecode.datautil.rst +0 -75
  256. Braindecode-0.5/docs/source/braindecode.experiments.bcic_iv_2a.rst +0 -27
  257. Braindecode-0.5/docs/source/braindecode.experiments.rst +0 -14
  258. Braindecode-0.5/docs/source/braindecode.models.rst +0 -75
  259. Braindecode-0.5/docs/source/braindecode.rst +0 -78
  260. Braindecode-0.5/docs/source/braindecode.visualization.rst +0 -51
  261. Braindecode-0.5/docs/source/modules.rst +0 -7
  262. {Braindecode-0.5 → Braindecode-0.6}/Braindecode.egg-info/dependency_links.txt +0 -0
  263. {Braindecode-0.5 → Braindecode-0.6}/Braindecode.egg-info/not-zip-safe +0 -0
  264. {Braindecode-0.5 → Braindecode-0.6}/Braindecode.egg-info/requires.txt +2 -2
  265. {Braindecode-0.5 → Braindecode-0.6}/LICENSE.txt +0 -0
  266. {Braindecode-0.5 → Braindecode-0.6}/MANIFEST.in +0 -0
  267. {Braindecode-0.5 → Braindecode-0.6}/braindecode/__init__.py +0 -0
  268. {Braindecode-0.5 → Braindecode-0.6}/docs/_templates/autosummary/function.rst +0 -0
  269. {Braindecode-0.5/braindecode/experiments → Braindecode-0.6/test}/__init__.py +0 -0
  270. {Braindecode-0.5/braindecode/experiments/bcic_iv_2a → Braindecode-0.6/test/acceptance_tests}/__init__.py +0 -0
@@ -0,0 +1 @@
1
+ 0/docs/_build/html/index.html
@@ -0,0 +1,56 @@
1
+ # Tagging a commit with [circle front] will build the front page and perform test-doc.
2
+ # Tagging a commit with [circle full] will build everything.
3
+ version: 2.1
4
+ parameters:
5
+ github-artifact-url:
6
+ type: string
7
+ default: "none"
8
+ jobs:
9
+ fetch_docs_from_github:
10
+ docker:
11
+ - image: circleci/python:3.7
12
+ environment:
13
+ GITHUB_ARTIFACT_URL: << pipeline.parameters.github-artifact-url >>
14
+ steps:
15
+ - run:
16
+ name: Download some docs
17
+ command: |
18
+ echo "Show Github artifact url"
19
+ echo $GITHUB_ARTIFACT_URL
20
+ wget -O HTML-docs.zip $GITHUB_ARTIFACT_URL
21
+ ls -ahl .
22
+ unzip HTML-docs.zip -d downloaded_docs
23
+ ls -ahl .
24
+ # Save the outputs
25
+ - store_artifacts:
26
+ path: downloaded_docs/html/
27
+ destination: dev
28
+ - persist_to_workspace:
29
+ root: downloaded_docs
30
+ paths:
31
+ - html
32
+ dummy_job:
33
+ docker:
34
+ - image: circleci/python:3.7
35
+ steps:
36
+ - run:
37
+ name: Dummy echo
38
+ command: |
39
+ echo "Do nothing..."
40
+
41
+
42
+ workflows:
43
+ version: 2.1
44
+
45
+ default:
46
+ when:
47
+ not:
48
+ equal: [ "none", << pipeline.parameters.github-artifact-url >> ]
49
+ jobs:
50
+ - fetch_docs_from_github
51
+
52
+ dummy_workflow:
53
+ when:
54
+ equal: [ "none", << pipeline.parameters.github-artifact-url >> ]
55
+ jobs:
56
+ - dummy_job
@@ -0,0 +1,23 @@
1
+ name: flake8-codestyle
2
+ on: [pull_request]
3
+
4
+ jobs:
5
+ Flake8-Codestyle-Check:
6
+ runs-on: ubuntu-latest
7
+ defaults:
8
+ run:
9
+ shell: bash -l {0}
10
+ steps:
11
+ - name: Checking Out Repository
12
+ uses: actions/checkout@v2
13
+ - name: Install Python
14
+ uses: actions/setup-python@v2
15
+ with:
16
+ python-version: "3.8"
17
+ - name: Install Flake8
18
+ run: pip install flake8
19
+ - name: Run Flake8
20
+ uses: liskin/gh-problem-matcher-wrap@v1
21
+ with:
22
+ linters: flake8
23
+ run: flake8 .
@@ -0,0 +1,13 @@
1
+ on: [status]
2
+ jobs:
3
+ circleci_artifacts_redirector:
4
+ runs-on: ubuntu-latest
5
+ name: Run CircleCI artifacts redirector
6
+ steps:
7
+ - name: GitHub Action step
8
+ uses: larsoner/circleci-artifacts-redirector-action@master
9
+ with:
10
+ repo-token: ${{ secrets.GITHUB_TOKEN }}
11
+ artifact-path: 0/dev/index.html
12
+ circleci-jobs: fetch_docs_from_github
13
+ job-title: Check rendered doc here!
@@ -0,0 +1,47 @@
1
+ name: push-artifact-to-circle-ci
2
+
3
+ # will be changed to on workflow_run
4
+ on:
5
+ workflow_run:
6
+ workflows: ["tests-and-docs"]
7
+ branches-ignore: ["master"]
8
+ types:
9
+ - completed
10
+
11
+ jobs:
12
+ Push-Artifact-to-CircleCI:
13
+ if: ${{ github.event.workflow_run.conclusion == 'success' }}
14
+ runs-on: ubuntu-latest
15
+ defaults:
16
+ run:
17
+ shell: bash -l {0}
18
+ steps:
19
+ - name: Trigger CircleCI download and publication of HTML Doc Artifact
20
+ env:
21
+ EVENT_OBJ: ${{ toJson(github.event) }}
22
+ COMMIT_SHA: ${{ github.event.workflow_run.head_sha }}
23
+ REPO_NAME: ${{ github.event.workflow_run.head_repository.full_name }}
24
+ CIRCLECI_TOKEN: ${{ secrets.CIRCLECI_TOKEN }}
25
+ RUN_ID: ${{github.event.workflow_run.id}}
26
+ run: |
27
+ echo "github.event.workflow_run.head_sha"
28
+ echo ${{ github.event.workflow_run.head_sha }}
29
+ echo "github.event.workflow_run.head_repository.html_url"
30
+ echo ${{ github.event.workflow_run.head_repository.html_url }}
31
+ # Acquire the Pull Request Number from Github API
32
+ echo "automated curl"
33
+ PR_NUMBER=$(curl -H "Accept: application/vnd.github.groot-preview+json" https://api.github.com/repos/$REPO_NAME/commits/$COMMIT_SHA/pulls 2>/dev/null | jq '.[0].number')
34
+ echo $PR_NUMBER
35
+
36
+ # Use Pull Request Number to trigger pipeline on CircleCI which will just download artifact,
37
+ # unzip it and make it available for browsing
38
+ curl --request POST \
39
+ --url https://circleci.com/api/v2/project/gh/braindecode/braindecode/pipeline \
40
+ --header "Circle-Token: $CIRCLECI_TOKEN" \
41
+ --header 'content-type: application/json' \
42
+ --header 'x-attribution-actor-id: github_actions' \
43
+ --header 'x-attribution-login: github_actions' \
44
+ --data \{\"branch\":\"pull/$PR_NUMBER/head\",\"parameters\":\{\"github-artifact-url\":\"https://nightly.link/braindecode/braindecode/actions/runs/$RUN_ID/HTML-Docs.zip\"\}\}
45
+ # Just for debugging
46
+ echo "EVENT_OBJ"
47
+ echo $EVENT_OBJ
@@ -0,0 +1,98 @@
1
+ name: tests-and-docs
2
+
3
+ on:
4
+ pull_request:
5
+ push:
6
+ branches: master
7
+
8
+ jobs:
9
+ Install-Test-Doc-Braindecode:
10
+ runs-on: ubuntu-latest
11
+ strategy:
12
+ fail-fast: false
13
+ matrix:
14
+ skorch_version: ['main', 'stable']
15
+ defaults:
16
+ run:
17
+ shell: bash -l {0}
18
+ steps:
19
+
20
+ ## Install Braindecode
21
+ - name: Checking Out Repository
22
+ uses: actions/checkout@v2
23
+ # Cache MNE Data
24
+ # The cache key here is fixed except for os
25
+ # so if you download a new mne dataset in the code, best to manually increment the key below
26
+ - name: Create/Restore MNE Data Cache
27
+ id: cache-mne_data
28
+ uses: actions/cache@v2
29
+ with:
30
+ path: ~/mne_data
31
+ key: ${{ runner.os }}-v3
32
+ - name: Setting Up Conda Braindecode Environment
33
+ uses: conda-incubator/setup-miniconda@v2
34
+ with:
35
+ environment-file: environment.yml
36
+ python-version: 3.7
37
+ activate-environment: braindecode
38
+ auto-activate-base: false
39
+ # Show Conda and Python Versions
40
+ - run: conda --version
41
+ - run: conda info --envs
42
+ - run: which python
43
+ # Install MOABB as well
44
+ - name: Install MOABB
45
+ run: pip install moabb
46
+ # Use skorch github master if requested, otherwise has been installed via conda in environment.yaml
47
+ - name: Install Skorch development version from git repo
48
+ if: ${{ matrix.skorch_version == 'main' }}
49
+ run: pip install git+https://github.com/skorch-dev/skorch.git
50
+ - name: Install Braindecode from Current Checkout
51
+ run: pip install -e .
52
+ # Show Braindecode Version
53
+ - run: python -c "import braindecode; print(braindecode.__version__)"
54
+
55
+ ## Run Tests
56
+ - name: Install Codecov etc.
57
+ run: pip install --upgrade pytest pytest-cov codecov
58
+ - name: Run Tests # See https://stackoverflow.com/a/59959080/1469195 for the cov-report logic
59
+ run: pytest --cov=braindecode test/ --cov-report term --cov-report xml:coverage.xml
60
+ - name: Upload Coverage to Codecov
61
+ uses: codecov/codecov-action@v1
62
+ with:
63
+ fail_ci_if_error: true
64
+ file: ./coverage.xml
65
+ path_to_write_report: ./codecov_report.txt
66
+ - name: Upload Codecov Coverage report for checking
67
+ uses: actions/upload-artifact@v2
68
+ with:
69
+ name: codecov-report
70
+ path: ./codecov_report.txt
71
+
72
+ ## Create Sphinx Documentation
73
+ - name: Install Docs Requirements
74
+ run: python -m pip install --upgrade -r docs/requirements.txt
75
+ - name: Install newer versions scikit learn scipy to prevent error # should be removed once moabb reason is clearer
76
+ run: pip install --upgrade scipy scikit-learn
77
+ - name: Install newer version of sphinx-gallery # should be removed sphinx-gallery with v0.10
78
+ run: pip install -U https://api.github.com/repos/sphinx-gallery/sphinx-gallery/zipball/master
79
+ - name: Create Docs
80
+ run: |
81
+ cd docs
82
+ make html
83
+ - name: Upload HTML Docs as Artifacts
84
+ uses: actions/upload-artifact@v2
85
+ with:
86
+ name: HTML-Docs
87
+ path: ./docs/_build/
88
+
89
+ - name: Deploy to Github Pages if on Master
90
+ if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/master' && matrix.skorch_version == 'stable'}}
91
+ uses: peaceiris/actions-gh-pages@v3
92
+ with:
93
+ deploy_key: ${{ secrets.ACTIONS_DEPLOY_KEY }}
94
+ external_repository: braindecode/braindecode.github.io
95
+ destination_dir: master
96
+ publish_branch: master
97
+ publish_dir: ./docs/_build/html
98
+ cname: braindecode.org
@@ -0,0 +1,63 @@
1
+ junit-results.xml
2
+ *.pyc
3
+ *.pyo
4
+ *.sh
5
+ *.so
6
+ *.tar.gz
7
+ *.log
8
+ *~
9
+ .#*
10
+ *.swp
11
+ *.lprof
12
+ *.npy
13
+ *.zip
14
+ *.tar.*
15
+ *.egg*
16
+ *.tmproj
17
+ *.png
18
+ *.dat
19
+ .DS_Store
20
+ auto_examples
21
+ build
22
+ coverage
23
+ .cache/
24
+ .pytest_cache/
25
+ __pycache__/
26
+ prof/
27
+ .ipynb_checkpoints
28
+
29
+ dist/
30
+ docs/_build/
31
+ docs/generated/
32
+ docs/auto_examples/
33
+ docs/auto_tutorials/
34
+ docs/modules/generated/
35
+ docs/sphinxext/cachedir
36
+ docs/source
37
+ pip-log.txt
38
+ .coverage*
39
+ tags
40
+ doc/coverages
41
+ doc/samples
42
+ cover
43
+ *.html
44
+
45
+ *.orig
46
+
47
+ # PyCharm
48
+ .idea/**
49
+
50
+ # sublime
51
+ *-e
52
+
53
+ # Visual Studio Code
54
+ .vscode
55
+ *.code-workspace
56
+
57
+ # Emacs
58
+ *.py#
59
+ *.rst#
60
+
61
+ .venv/
62
+ venv/
63
+ *.json
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 1.1
2
2
  Name: Braindecode
3
- Version: 0.5
3
+ Version: 0.6
4
4
  Summary: A deep learning toolbox to decode raw time-domain EEG.
5
5
  Home-page: https://github.com/braindecode/braindecode
6
6
  Author: Robin Tibor Schirrmeister
@@ -13,8 +13,8 @@ Description: Braindecode
13
13
  :alt: Join the chat at https://gitter.im/braindecodechat/community
14
14
  :target: https://gitter.im/braindecodechat/community?utm_source=badge&utm_medium=badge&utm_campaign=pr-badge&utm_content=badge
15
15
 
16
- .. image:: https://travis-ci.org/braindecode/braindecode.svg?branch=master
17
- :target: https://travis-ci.org/braindecode/braindecode
16
+ .. image:: https://github.com/braindecode/braindecode/workflows/tests-and-docs/badge.svg
17
+ :target: https://github.com/braindecode/braindecode/actions
18
18
 
19
19
  .. image:: https://circleci.com/gh/braindecode/braindecode.svg?style=svg
20
20
  :target: https://circleci.com/gh/braindecode/braindecode
@@ -36,7 +36,13 @@ Description: Braindecode
36
36
 
37
37
  1. Install pytorch from http://pytorch.org/ (you don't need to install torchvision).
38
38
 
39
- 2. Install latest release of braindecode via pip:
39
+ 2. Install `MOABB <https://github.com/NeuroTechX/moabb>`_ via pip (needed if you want to use MOABB datasets utilities):
40
+
41
+ .. code-block:: bash
42
+
43
+ pip install moabb
44
+
45
+ 3. Install latest release of braindecode via pip:
40
46
 
41
47
  .. code-block:: bash
42
48
 
@@ -46,16 +52,11 @@ Description: Braindecode
46
52
 
47
53
  .. code-block:: bash
48
54
 
49
- curl -O https://raw.githubusercontent.com/braindecode/braindecode/master/environment.yml
50
- conda env create -f environment.yml
51
- conda activate braindecode
52
-
53
- .. note::
54
- The latest development version of mne-python is currently required for
55
- improvements to lazy loading performance. (commit 3989f998c5f974ed37e97fa3e6c8ead0f5a1cb2a).
55
+ curl -O https://raw.githubusercontent.com/braindecode/braindecode/master/environment.yml
56
+ conda env create -f environment.yml
57
+ conda activate braindecode
56
58
 
57
- Install the latest version of braindecode via pip:
58
- ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
59
+ alternatively, install the latest version of braindecode via pip:
59
60
 
60
61
  .. code-block:: bash
61
62
 
@@ -0,0 +1,228 @@
1
+ .gitignore
2
+ CONTRIBUTING.md
3
+ LICENSE.txt
4
+ MANIFEST.in
5
+ README.rst
6
+ bandit.yml
7
+ codecov.yml
8
+ environment.yml
9
+ requirements.txt
10
+ setup.cfg
11
+ setup.py
12
+ .circleci/artifact_path
13
+ .circleci/config.yml
14
+ .github/workflows/flake8.yaml
15
+ .github/workflows/link-to-doc.yaml
16
+ .github/workflows/push-artifact-to-circleci.yml
17
+ .github/workflows/tests-and-docs.yml
18
+ Braindecode.egg-info/PKG-INFO
19
+ Braindecode.egg-info/SOURCES.txt
20
+ Braindecode.egg-info/dependency_links.txt
21
+ Braindecode.egg-info/not-zip-safe
22
+ Braindecode.egg-info/requires.txt
23
+ Braindecode.egg-info/top_level.txt
24
+ braindecode/__init__.py
25
+ braindecode/classifier.py
26
+ braindecode/regressor.py
27
+ braindecode/util.py
28
+ braindecode/version.py
29
+ braindecode/augmentation/__init__.py
30
+ braindecode/augmentation/base.py
31
+ braindecode/augmentation/functional.py
32
+ braindecode/augmentation/transforms.py
33
+ braindecode/datasets/__init__.py
34
+ braindecode/datasets/base.py
35
+ braindecode/datasets/bbci.py
36
+ braindecode/datasets/bcicomp.py
37
+ braindecode/datasets/mne.py
38
+ braindecode/datasets/moabb.py
39
+ braindecode/datasets/sleep_physionet.py
40
+ braindecode/datasets/tuh.py
41
+ braindecode/datasets/xy.py
42
+ braindecode/datautil/__init__.py
43
+ braindecode/datautil/mne.py
44
+ braindecode/datautil/preprocess.py
45
+ braindecode/datautil/serialization.py
46
+ braindecode/datautil/util.py
47
+ braindecode/datautil/windowers.py
48
+ braindecode/datautil/xy.py
49
+ braindecode/models/__init__.py
50
+ braindecode/models/deep4.py
51
+ braindecode/models/eegnet.py
52
+ braindecode/models/eegresnet.py
53
+ braindecode/models/functions.py
54
+ braindecode/models/hybrid.py
55
+ braindecode/models/modules.py
56
+ braindecode/models/shallow_fbcsp.py
57
+ braindecode/models/sleep_stager_blanco_2020.py
58
+ braindecode/models/sleep_stager_chambon_2018.py
59
+ braindecode/models/sleep_stager_eldele_2021.py
60
+ braindecode/models/tcn.py
61
+ braindecode/models/tidnet.py
62
+ braindecode/models/usleep.py
63
+ braindecode/models/util.py
64
+ braindecode/preprocessing/__init__.py
65
+ braindecode/preprocessing/preprocess.py
66
+ braindecode/preprocessing/windowers.py
67
+ braindecode/samplers/__init__.py
68
+ braindecode/samplers/base.py
69
+ braindecode/samplers/ssl.py
70
+ braindecode/training/__init__.py
71
+ braindecode/training/callbacks.py
72
+ braindecode/training/losses.py
73
+ braindecode/training/scoring.py
74
+ braindecode/visualization/__init__.py
75
+ braindecode/visualization/confusion_matrices.py
76
+ braindecode/visualization/gradients.py
77
+ docs/Makefile
78
+ docs/api.rst
79
+ docs/conf.py
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