boutpp-nightly 5.2.1.dev1161__tar.gz → 5.2.1.dev1222__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (2490) hide show
  1. boutpp_nightly-5.2.1.dev1222/CMakeLists.txt +1103 -0
  2. boutpp_nightly-5.2.1.dev1222/PKG-INFO +304 -0
  3. boutpp_nightly-5.2.1.dev1222/README.md +134 -0
  4. boutpp_nightly-5.2.1.dev1222/_version.txt +1 -0
  5. boutpp_nightly-5.2.1.dev1222/examples/elm-pb/elm_pb.cxx +2130 -0
  6. boutpp_nightly-5.2.1.dev1222/examples/elm-pb-outerloop/elm_pb_outerloop.cxx +2071 -0
  7. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/.github/workflows/ci.yml +784 -0
  8. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/.github/workflows/sonarlint.yml +30 -0
  9. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/CMakeLists.txt +573 -0
  10. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/README.md +1772 -0
  11. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/ci/build-in-all-remaining-configs.py +197 -0
  12. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/ci/setup-prerequisites-mingw.ps1 +26 -0
  13. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/ci/setup-prerequisites-unittest-macos.sh +44 -0
  14. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/ci/setup-prerequisites-unittest.sh +39 -0
  15. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/ci/setup-prerequisites.sh +25 -0
  16. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/ci/test-all-configs.py +536 -0
  17. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/ci/unittest.py +170 -0
  18. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/cmake/Autoconfig.cmake +165 -0
  19. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/cmake/InstallRules.cmake +96 -0
  20. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/cmake/OptionVariables.cmake +210 -0
  21. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/cmake/has_stackwalk.cpp +102 -0
  22. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/cmake/in/cpptrace-config-cmake.in +32 -0
  23. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/src/binary/module_base.cpp +97 -0
  24. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/src/binary/object.cpp +190 -0
  25. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/src/binary/pe.cpp +97 -0
  26. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/src/binary/pe.hpp +19 -0
  27. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/src/from_current.cpp +451 -0
  28. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/src/platform/memory_mapping.cpp +263 -0
  29. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/src/platform/memory_mapping.hpp +30 -0
  30. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/src/platform/platform.hpp +48 -0
  31. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/src/platform/program_name.hpp +102 -0
  32. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/src/prune_symbol.cpp +986 -0
  33. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/src/symbols/dwarf/dwarf_resolver.cpp +1030 -0
  34. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/src/symbols/symbols_with_addr2line.cpp +328 -0
  35. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/src/unwind/unwind.hpp +42 -0
  36. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/src/unwind/unwind_with_libunwind.cpp +87 -0
  37. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/src/utils/optional.hpp +170 -0
  38. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/src/utils/utils.cpp +61 -0
  39. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/src/utils/utils.hpp +357 -0
  40. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/test/CMakeLists.txt +148 -0
  41. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/test/add_subdirectory-integration/CMakeLists.txt +18 -0
  42. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/test/unit/main.cpp +14 -0
  43. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/test/unit/tracing/raw_trace.cpp +184 -0
  44. boutpp_nightly-5.2.1.dev1222/externalpackages/cpptrace/test/unit/tracing/try_catch.cpp +385 -0
  45. boutpp_nightly-5.2.1.dev1222/include/bout/array.hxx +492 -0
  46. boutpp_nightly-5.2.1.dev1222/include/bout/assert.hxx +69 -0
  47. boutpp_nightly-5.2.1.dev1222/include/bout/bout_types.hxx +156 -0
  48. boutpp_nightly-5.2.1.dev1222/include/bout/build_config.hxx +73 -0
  49. boutpp_nightly-5.2.1.dev1222/include/bout/coordinates_accessor.hxx +129 -0
  50. boutpp_nightly-5.2.1.dev1222/include/bout/field.hxx +921 -0
  51. boutpp_nightly-5.2.1.dev1222/include/bout/field2d.hxx +606 -0
  52. boutpp_nightly-5.2.1.dev1222/include/bout/field3d.hxx +1149 -0
  53. boutpp_nightly-5.2.1.dev1222/include/bout/field_accessor.hxx +171 -0
  54. boutpp_nightly-5.2.1.dev1222/include/bout/fieldops.hxx +428 -0
  55. boutpp_nightly-5.2.1.dev1222/include/bout/fieldperp.hxx +476 -0
  56. boutpp_nightly-5.2.1.dev1222/include/bout/interpolation.hxx +228 -0
  57. boutpp_nightly-5.2.1.dev1222/include/bout/mesh.hxx +904 -0
  58. boutpp_nightly-5.2.1.dev1222/include/bout/options.hxx +1184 -0
  59. boutpp_nightly-5.2.1.dev1222/include/bout/petsc_interface.hxx +600 -0
  60. boutpp_nightly-5.2.1.dev1222/include/bout/rajalib.hxx +155 -0
  61. boutpp_nightly-5.2.1.dev1222/include/bout/region.hxx +1010 -0
  62. boutpp_nightly-5.2.1.dev1222/include/bout/single_index_ops.hxx +407 -0
  63. boutpp_nightly-5.2.1.dev1222/include/bout/twiddle.hxx +1025 -0
  64. boutpp_nightly-5.2.1.dev1222/include/bout/utils.hxx +692 -0
  65. boutpp_nightly-5.2.1.dev1222/include/bout/vector3d.hxx +238 -0
  66. boutpp_nightly-5.2.1.dev1222/manual/sphinx/developer_docs/data_types.rst +583 -0
  67. boutpp_nightly-5.2.1.dev1222/manual/sphinx/index.rst +128 -0
  68. boutpp_nightly-5.2.1.dev1222/manual/sphinx/user_docs/algebraic_operators.rst +118 -0
  69. boutpp_nightly-5.2.1.dev1222/manual/sphinx/user_docs/field_expressions.rst +151 -0
  70. boutpp_nightly-5.2.1.dev1222/manual/sphinx/user_docs/gpu_support.rst +435 -0
  71. boutpp_nightly-5.2.1.dev1222/manual/sphinx/user_docs/parallel-transforms.rst +213 -0
  72. boutpp_nightly-5.2.1.dev1222/src/field/field2d.cxx +395 -0
  73. boutpp_nightly-5.2.1.dev1222/src/field/field3d.cxx +1057 -0
  74. boutpp_nightly-5.2.1.dev1222/src/field/fieldperp.cxx +226 -0
  75. boutpp_nightly-5.2.1.dev1222/src/field/gen_fieldops.jinja +374 -0
  76. boutpp_nightly-5.2.1.dev1222/src/field/gen_fieldops.py +379 -0
  77. boutpp_nightly-5.2.1.dev1222/src/field/generated_fieldops.cxx +3428 -0
  78. boutpp_nightly-5.2.1.dev1222/src/field/vecops.cxx +486 -0
  79. boutpp_nightly-5.2.1.dev1222/src/invert/laplace/impls/naulin/naulin_laplace.cxx +435 -0
  80. boutpp_nightly-5.2.1.dev1222/src/invert/laplace/impls/petsc3damg/petsc3damg.cxx +623 -0
  81. boutpp_nightly-5.2.1.dev1222/src/mesh/coordinates.cxx +2134 -0
  82. boutpp_nightly-5.2.1.dev1222/src/mesh/coordinates_accessor.cxx +86 -0
  83. boutpp_nightly-5.2.1.dev1222/src/mesh/difops.cxx +1061 -0
  84. boutpp_nightly-5.2.1.dev1222/src/mesh/interpolation_xz.cxx +104 -0
  85. boutpp_nightly-5.2.1.dev1222/src/mesh/parallel/fci.cxx +490 -0
  86. boutpp_nightly-5.2.1.dev1222/src/mesh/parallel/shiftedmetric.cxx +619 -0
  87. boutpp_nightly-5.2.1.dev1222/src/sys/derivs.cxx +495 -0
  88. boutpp_nightly-5.2.1.dev1222/tests/integrated/test-petsc_laplace/test_petsc_laplace.cxx +393 -0
  89. boutpp_nightly-5.2.1.dev1222/tests/unit/CMakeLists.txt +152 -0
  90. boutpp_nightly-5.2.1.dev1222/tests/unit/field/test_field2d.cxx +1563 -0
  91. boutpp_nightly-5.2.1.dev1222/tests/unit/field/test_field3d.cxx +2594 -0
  92. boutpp_nightly-5.2.1.dev1222/tests/unit/field/test_fieldperp.cxx +1902 -0
  93. boutpp_nightly-5.2.1.dev1222/tests/unit/field/test_if_else.cxx +57 -0
  94. boutpp_nightly-5.2.1.dev1222/tests/unit/include/bout/test_region.cxx +2775 -0
  95. boutpp_nightly-5.2.1.dev1222/tests/unit/invert/laplace/test_laplace_cyclic.cxx +139 -0
  96. boutpp_nightly-5.2.1.dev1222/tests/unit/invert/laplace/test_laplace_hypre3d.cxx +355 -0
  97. boutpp_nightly-5.2.1.dev1222/tests/unit/invert/laplace/test_laplace_petsc3damg.cxx +332 -0
  98. boutpp_nightly-5.2.1.dev1222/tests/unit/solver/test_nvector.cxx +260 -0
  99. boutpp_nightly-5.2.1.dev1222/tests/unit/sys/test_options_fields.cxx +162 -0
  100. boutpp_nightly-5.2.1.dev1222/tests/unit/test_extras.cxx +84 -0
  101. boutpp_nightly-5.2.1.dev1222/tests/unit/test_extras.hxx +138 -0
  102. boutpp_nightly-5.2.1.dev1161/CMakeLists.txt +0 -1094
  103. boutpp_nightly-5.2.1.dev1161/PKG-INFO +0 -304
  104. boutpp_nightly-5.2.1.dev1161/README.md +0 -134
  105. boutpp_nightly-5.2.1.dev1161/_version.txt +0 -1
  106. boutpp_nightly-5.2.1.dev1161/examples/elm-pb/elm_pb.cxx +0 -2124
  107. boutpp_nightly-5.2.1.dev1161/examples/elm-pb-outerloop/elm_pb_outerloop.cxx +0 -2069
  108. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/.github/workflows/ci.yml +0 -1138
  109. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/.github/workflows/sonarlint.yml +0 -25
  110. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/CMakeLists.txt +0 -557
  111. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/README.md +0 -1773
  112. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/ci/build-in-all-remaining-configs.py +0 -232
  113. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/ci/integration-test-windows.ps1 +0 -97
  114. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/ci/integration-test.sh +0 -78
  115. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/ci/setup-prerequisites-mingw.ps1 +0 -34
  116. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/ci/setup-prerequisites-unittest-macos.sh +0 -49
  117. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/ci/setup-prerequisites-unittest.sh +0 -44
  118. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/ci/setup-prerequisites.sh +0 -29
  119. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/ci/test-all-configs.py +0 -577
  120. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/ci/unittest.py +0 -173
  121. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/cmake/Autoconfig.cmake +0 -169
  122. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/cmake/FindLibunwind.cmake +0 -40
  123. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/cmake/InstallRules.cmake +0 -98
  124. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/cmake/OptionVariables.cmake +0 -206
  125. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/cmake/has_stackwalk.cpp +0 -118
  126. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/cmake/in/cpptrace-config-cmake.in +0 -45
  127. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/src/binary/module_base.cpp +0 -97
  128. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/src/binary/object.cpp +0 -190
  129. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/src/binary/pe.cpp +0 -104
  130. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/src/binary/pe.hpp +0 -19
  131. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/src/from_current.cpp +0 -461
  132. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/src/platform/memory_mapping.cpp +0 -396
  133. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/src/platform/memory_mapping.hpp +0 -33
  134. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/src/platform/platform.hpp +0 -52
  135. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/src/platform/program_name.hpp +0 -102
  136. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/src/prune_symbol.cpp +0 -1031
  137. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/src/symbols/dwarf/dwarf_resolver.cpp +0 -1216
  138. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/src/symbols/symbols_with_addr2line.cpp +0 -329
  139. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/src/unwind/unwind.hpp +0 -45
  140. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/src/unwind/unwind_with_libunwind.cpp +0 -101
  141. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/src/unwind/unwind_with_rtlvirtualunwind.cpp +0 -111
  142. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/src/utils/optional.hpp +0 -180
  143. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/src/utils/utils.cpp +0 -59
  144. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/src/utils/utils.hpp +0 -359
  145. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/test/CMakeLists.txt +0 -152
  146. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/test/add_subdirectory-integration/CMakeLists.txt +0 -19
  147. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/test/unit/main.cpp +0 -30
  148. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/test/unit/tracing/namespace_resolution.cpp +0 -133
  149. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/test/unit/tracing/raw_trace.cpp +0 -190
  150. boutpp_nightly-5.2.1.dev1161/externalpackages/cpptrace/test/unit/tracing/try_catch.cpp +0 -395
  151. boutpp_nightly-5.2.1.dev1161/include/bout/array.hxx +0 -491
  152. boutpp_nightly-5.2.1.dev1161/include/bout/assert.hxx +0 -68
  153. boutpp_nightly-5.2.1.dev1161/include/bout/bout_types.hxx +0 -143
  154. boutpp_nightly-5.2.1.dev1161/include/bout/build_config.hxx +0 -61
  155. boutpp_nightly-5.2.1.dev1161/include/bout/coordinates_accessor.hxx +0 -129
  156. boutpp_nightly-5.2.1.dev1161/include/bout/field.hxx +0 -725
  157. boutpp_nightly-5.2.1.dev1161/include/bout/field2d.hxx +0 -383
  158. boutpp_nightly-5.2.1.dev1161/include/bout/field3d.hxx +0 -896
  159. boutpp_nightly-5.2.1.dev1161/include/bout/field_accessor.hxx +0 -133
  160. boutpp_nightly-5.2.1.dev1161/include/bout/fieldperp.hxx +0 -399
  161. boutpp_nightly-5.2.1.dev1161/include/bout/interpolation.hxx +0 -206
  162. boutpp_nightly-5.2.1.dev1161/include/bout/mesh.hxx +0 -898
  163. boutpp_nightly-5.2.1.dev1161/include/bout/options.hxx +0 -1177
  164. boutpp_nightly-5.2.1.dev1161/include/bout/petsc_interface.hxx +0 -600
  165. boutpp_nightly-5.2.1.dev1161/include/bout/rajalib.hxx +0 -145
  166. boutpp_nightly-5.2.1.dev1161/include/bout/region.hxx +0 -996
  167. boutpp_nightly-5.2.1.dev1161/include/bout/single_index_ops.hxx +0 -418
  168. boutpp_nightly-5.2.1.dev1161/include/bout/utils.hxx +0 -690
  169. boutpp_nightly-5.2.1.dev1161/include/bout/vector3d.hxx +0 -240
  170. boutpp_nightly-5.2.1.dev1161/manual/sphinx/developer_docs/data_types.rst +0 -542
  171. boutpp_nightly-5.2.1.dev1161/manual/sphinx/index.rst +0 -119
  172. boutpp_nightly-5.2.1.dev1161/manual/sphinx/user_docs/algebraic_operators.rst +0 -88
  173. boutpp_nightly-5.2.1.dev1161/manual/sphinx/user_docs/gpu_support.rst +0 -372
  174. boutpp_nightly-5.2.1.dev1161/manual/sphinx/user_docs/parallel-transforms.rst +0 -198
  175. boutpp_nightly-5.2.1.dev1161/src/field/field2d.cxx +0 -398
  176. boutpp_nightly-5.2.1.dev1161/src/field/field3d.cxx +0 -1048
  177. boutpp_nightly-5.2.1.dev1161/src/field/fieldperp.cxx +0 -229
  178. boutpp_nightly-5.2.1.dev1161/src/field/gen_fieldops.jinja +0 -248
  179. boutpp_nightly-5.2.1.dev1161/src/field/gen_fieldops.py +0 -337
  180. boutpp_nightly-5.2.1.dev1161/src/field/generated_fieldops.cxx +0 -3545
  181. boutpp_nightly-5.2.1.dev1161/src/field/vecops.cxx +0 -485
  182. boutpp_nightly-5.2.1.dev1161/src/invert/laplace/impls/naulin/naulin_laplace.cxx +0 -435
  183. boutpp_nightly-5.2.1.dev1161/src/invert/laplace/impls/petsc3damg/petsc3damg.cxx +0 -598
  184. boutpp_nightly-5.2.1.dev1161/src/mesh/coordinates.cxx +0 -2134
  185. boutpp_nightly-5.2.1.dev1161/src/mesh/coordinates_accessor.cxx +0 -78
  186. boutpp_nightly-5.2.1.dev1161/src/mesh/difops.cxx +0 -1054
  187. boutpp_nightly-5.2.1.dev1161/src/mesh/interpolation_xz.cxx +0 -100
  188. boutpp_nightly-5.2.1.dev1161/src/mesh/parallel/fci.cxx +0 -490
  189. boutpp_nightly-5.2.1.dev1161/src/mesh/parallel/shiftedmetric.cxx +0 -292
  190. boutpp_nightly-5.2.1.dev1161/src/sys/derivs.cxx +0 -488
  191. boutpp_nightly-5.2.1.dev1161/tests/integrated/test-petsc_laplace/test_petsc_laplace.cxx +0 -393
  192. boutpp_nightly-5.2.1.dev1161/tests/unit/CMakeLists.txt +0 -151
  193. boutpp_nightly-5.2.1.dev1161/tests/unit/field/test_field2d.cxx +0 -1480
  194. boutpp_nightly-5.2.1.dev1161/tests/unit/field/test_field3d.cxx +0 -2474
  195. boutpp_nightly-5.2.1.dev1161/tests/unit/field/test_fieldperp.cxx +0 -1831
  196. boutpp_nightly-5.2.1.dev1161/tests/unit/include/bout/test_region.cxx +0 -2730
  197. boutpp_nightly-5.2.1.dev1161/tests/unit/invert/laplace/test_laplace_cyclic.cxx +0 -140
  198. boutpp_nightly-5.2.1.dev1161/tests/unit/invert/laplace/test_laplace_hypre3d.cxx +0 -355
  199. boutpp_nightly-5.2.1.dev1161/tests/unit/invert/laplace/test_laplace_petsc3damg.cxx +0 -332
  200. boutpp_nightly-5.2.1.dev1161/tests/unit/solver/test_nvector.cxx +0 -260
  201. boutpp_nightly-5.2.1.dev1161/tests/unit/sys/test_options_fields.cxx +0 -132
  202. boutpp_nightly-5.2.1.dev1161/tests/unit/test_extras.cxx +0 -44
  203. boutpp_nightly-5.2.1.dev1161/tests/unit/test_extras.hxx +0 -113
  204. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/.build_adios2_for_ci.sh +0 -0
  205. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/.build_petsc_for_ci.sh +0 -0
  206. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/.build_sundials_for_ci.sh +0 -0
  207. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/.ci_fedora.sh +0 -0
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  1865. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-options-netcdf/runtest +0 -0
  1866. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-options-netcdf/test-options-netcdf.cxx +0 -0
  1867. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace/CMakeLists.txt +0 -0
  1868. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace/data/BOUT.inp +0 -0
  1869. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace/runtest +0 -0
  1870. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/CMakeLists.txt +0 -0
  1871. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/data/BOUT.inp +0 -0
  1872. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/flat_grid.nc +0 -0
  1873. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis10.nc +0 -0
  1874. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis100.nc +0 -0
  1875. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis101.nc +0 -0
  1876. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis102.nc +0 -0
  1877. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis103.nc +0 -0
  1878. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis104.nc +0 -0
  1879. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis105.nc +0 -0
  1880. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis106.nc +0 -0
  1881. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis107.nc +0 -0
  1882. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis108.nc +0 -0
  1883. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis109.nc +0 -0
  1884. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis11.nc +0 -0
  1885. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis110.nc +0 -0
  1886. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis111.nc +0 -0
  1887. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis112.nc +0 -0
  1888. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis113.nc +0 -0
  1889. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis114.nc +0 -0
  1890. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis115.nc +0 -0
  1891. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis116.nc +0 -0
  1892. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis117.nc +0 -0
  1893. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis118.nc +0 -0
  1894. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis119.nc +0 -0
  1895. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis12.nc +0 -0
  1896. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis120.nc +0 -0
  1897. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis121.nc +0 -0
  1898. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis122.nc +0 -0
  1899. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis123.nc +0 -0
  1900. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis124.nc +0 -0
  1901. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis125.nc +0 -0
  1902. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis126.nc +0 -0
  1903. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis127.nc +0 -0
  1904. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis128.nc +0 -0
  1905. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis129.nc +0 -0
  1906. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis13.nc +0 -0
  1907. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis14.nc +0 -0
  1908. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis15.nc +0 -0
  1909. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis16.nc +0 -0
  1910. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis17.nc +0 -0
  1911. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis18.nc +0 -0
  1912. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis19.nc +0 -0
  1913. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis2.nc +0 -0
  1914. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis20.nc +0 -0
  1915. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis21.nc +0 -0
  1916. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis22.nc +0 -0
  1917. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis23.nc +0 -0
  1918. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis24.nc +0 -0
  1919. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis25.nc +0 -0
  1920. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis26.nc +0 -0
  1921. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis27.nc +0 -0
  1922. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis28.nc +0 -0
  1923. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis29.nc +0 -0
  1924. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis3.nc +0 -0
  1925. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis30.nc +0 -0
  1926. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis31.nc +0 -0
  1927. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis32.nc +0 -0
  1928. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis33.nc +0 -0
  1929. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis34.nc +0 -0
  1930. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis35.nc +0 -0
  1931. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis36.nc +0 -0
  1932. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis37.nc +0 -0
  1933. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis38.nc +0 -0
  1934. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis39.nc +0 -0
  1935. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis4.nc +0 -0
  1936. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis40.nc +0 -0
  1937. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis41.nc +0 -0
  1938. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis42.nc +0 -0
  1939. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis43.nc +0 -0
  1940. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis44.nc +0 -0
  1941. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis45.nc +0 -0
  1942. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis46.nc +0 -0
  1943. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis47.nc +0 -0
  1944. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis48.nc +0 -0
  1945. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis49.nc +0 -0
  1946. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis5.nc +0 -0
  1947. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis50.nc +0 -0
  1948. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis51.nc +0 -0
  1949. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis52.nc +0 -0
  1950. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis53.nc +0 -0
  1951. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis54.nc +0 -0
  1952. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis55.nc +0 -0
  1953. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis56.nc +0 -0
  1954. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis57.nc +0 -0
  1955. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis58.nc +0 -0
  1956. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis59.nc +0 -0
  1957. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis6.nc +0 -0
  1958. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis60.nc +0 -0
  1959. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis61.nc +0 -0
  1960. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis62.nc +0 -0
  1961. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis63.nc +0 -0
  1962. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis64.nc +0 -0
  1963. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis65.nc +0 -0
  1964. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis66.nc +0 -0
  1965. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis67.nc +0 -0
  1966. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis68.nc +0 -0
  1967. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis69.nc +0 -0
  1968. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis7.nc +0 -0
  1969. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis70.nc +0 -0
  1970. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis71.nc +0 -0
  1971. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis72.nc +0 -0
  1972. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis73.nc +0 -0
  1973. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis74.nc +0 -0
  1974. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis75.nc +0 -0
  1975. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis76.nc +0 -0
  1976. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis77.nc +0 -0
  1977. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis78.nc +0 -0
  1978. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis79.nc +0 -0
  1979. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis8.nc +0 -0
  1980. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis80.nc +0 -0
  1981. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis81.nc +0 -0
  1982. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis82.nc +0 -0
  1983. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis83.nc +0 -0
  1984. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis84.nc +0 -0
  1985. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis85.nc +0 -0
  1986. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis86.nc +0 -0
  1987. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis87.nc +0 -0
  1988. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis88.nc +0 -0
  1989. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis89.nc +0 -0
  1990. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis9.nc +0 -0
  1991. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis90.nc +0 -0
  1992. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis91.nc +0 -0
  1993. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis92.nc +0 -0
  1994. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis93.nc +0 -0
  1995. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis94.nc +0 -0
  1996. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis95.nc +0 -0
  1997. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis96.nc +0 -0
  1998. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis97.nc +0 -0
  1999. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis98.nc +0 -0
  2000. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/grids/grid_MAST_SOL_jyis99.nc +0 -0
  2001. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/runtest +0 -0
  2002. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-petsc_laplace_MAST-grid/test_petsc_laplace_MAST_grid.cxx +0 -0
  2003. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-region-iterator/.gitignore +0 -0
  2004. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-region-iterator/data/BOUT.inp +0 -0
  2005. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-region-iterator/runtest +0 -0
  2006. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-region-iterator/test_region_iterator.cxx +0 -0
  2007. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-restart-io/.gitignore +0 -0
  2008. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-restart-io/CMakeLists.txt +0 -0
  2009. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-restart-io/data/BOUT.inp +0 -0
  2010. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-restart-io/runtest +0 -0
  2011. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-restart-io/test-restart-io.cxx +0 -0
  2012. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-restarting/CMakeLists.txt +0 -0
  2013. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-restarting/README.md +0 -0
  2014. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-restarting/data/BOUT.inp +0 -0
  2015. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-restarting/runtest +0 -0
  2016. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-restarting/test_restarting.cxx +0 -0
  2017. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-slepc-solver/.gitignore +0 -0
  2018. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-slepc-solver/CMakeLists.txt +0 -0
  2019. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-slepc-solver/README.md +0 -0
  2020. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-slepc-solver/data/BOUT.inp +0 -0
  2021. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-slepc-solver/runtest +0 -0
  2022. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-slepc-solver/test-slepc-solver.cxx +0 -0
  2023. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-smooth/CMakeLists.txt +0 -0
  2024. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-smooth/README.md +0 -0
  2025. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-smooth/data/BOUT.inp +0 -0
  2026. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-smooth/data/benchmark.0.nc +0 -0
  2027. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-smooth/runtest +0 -0
  2028. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-smooth/test_smooth.cxx +0 -0
  2029. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-smooth/test_smooth.nc +0 -0
  2030. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-snb/CMakeLists.txt +0 -0
  2031. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-snb/data/BOUT.inp +0 -0
  2032. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-snb/runtest +0 -0
  2033. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-snb/test_snb.cxx +0 -0
  2034. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-solver/.gitignore +0 -0
  2035. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-solver/CMakeLists.txt +0 -0
  2036. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-solver/README.md +0 -0
  2037. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-solver/runtest +0 -0
  2038. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-solver/test_solver.cxx +0 -0
  2039. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-squash/.gitignore +0 -0
  2040. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-squash/CMakeLists.txt +0 -0
  2041. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-squash/data/BOUT.inp +0 -0
  2042. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-squash/runtest +0 -0
  2043. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-squash/squash.cxx +0 -0
  2044. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-stopCheck/CMakeLists.txt +0 -0
  2045. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-stopCheck/data/BOUT.inp +0 -0
  2046. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-stopCheck/data/BOUT.stop +0 -0
  2047. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-stopCheck/runtest +0 -0
  2048. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-stopCheck/test_stopCheck.cxx +0 -0
  2049. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-stopCheck-file/.gitignore +0 -0
  2050. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-stopCheck-file/CMakeLists.txt +0 -0
  2051. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-stopCheck-file/README.md +0 -0
  2052. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-stopCheck-file/data/BOUT.inp +0 -0
  2053. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-stopCheck-file/data/BOUT.stop +0 -0
  2054. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-stopCheck-file/dataSecond/BOUT.inp +0 -0
  2055. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-stopCheck-file/dataSecond/otherStop.check +0 -0
  2056. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-stopCheck-file/runtest +0 -0
  2057. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-stopCheck-file/test_stopCheck.cxx +0 -0
  2058. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-subdir/README.md +0 -0
  2059. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-subdir/bar/bar.cxx +0 -0
  2060. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-subdir/data/BOUT.inp +0 -0
  2061. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-subdir/fuu/fuu.cxx +0 -0
  2062. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-subdir/fuu/fuu.hxx +0 -0
  2063. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-subdir/runtest +0 -0
  2064. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-subdir/subdirs.cxx +0 -0
  2065. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-twistshift/CMakeLists.txt +0 -0
  2066. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-twistshift/data/BOUT.inp +0 -0
  2067. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-twistshift/runtest +0 -0
  2068. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-twistshift/test-twistshift.cxx +0 -0
  2069. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-twistshift-staggered/CMakeLists.txt +0 -0
  2070. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-twistshift-staggered/data/BOUT.inp +0 -0
  2071. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-twistshift-staggered/runtest +0 -0
  2072. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-twistshift-staggered/test-twistshift.cxx +0 -0
  2073. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-unused-options/CMakeLists.txt +0 -0
  2074. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-unused-options/data/BOUT.inp +0 -0
  2075. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-unused-options/runtest +0 -0
  2076. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-unused-options/test_unused_options.cxx +0 -0
  2077. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-vec/CMakeLists.txt +0 -0
  2078. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-vec/data/BOUT.inp +0 -0
  2079. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-vec/runtest +0 -0
  2080. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-vec/testVec.cxx +0 -0
  2081. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-yupdown/CMakeLists.txt +0 -0
  2082. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-yupdown/data/BOUT.inp +0 -0
  2083. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-yupdown/runtest +0 -0
  2084. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-yupdown/test_yupdown.cxx +0 -0
  2085. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-yupdown-weights/CMakeLists.txt +0 -0
  2086. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-yupdown-weights/data/BOUT.inp +0 -0
  2087. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-yupdown-weights/runtest +0 -0
  2088. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test-yupdown-weights/test_yupdown_weights.cxx +0 -0
  2089. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/integrated/test_suite +0 -0
  2090. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/requirements/__init__.py +0 -0
  2091. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/requirements/boutpp +0 -0
  2092. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/requirements/fedora +0 -0
  2093. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/requirements/metric_3d +0 -0
  2094. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/requirements/requirements.py +0 -0
  2095. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/requirements/scipy +0 -0
  2096. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/requirements/travis +0 -0
  2097. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/requirements/zoidberg +0 -0
  2098. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tests/test_suite +0 -0
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  2239. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/gen_vertices.pro +0 -0
  2240. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/get_float.pro +0 -0
  2241. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/get_integer.pro +0 -0
  2242. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/get_pol_slice.pro +0 -0
  2243. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/get_yesno.pro +0 -0
  2244. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/gmres.pro +0 -0
  2245. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/grid_contour.pro +0 -0
  2246. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/in_list.pro +0 -0
  2247. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/in_struct.pro +0 -0
  2248. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/int_func.pro +0 -0
  2249. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/int_trapezoid.pro +0 -0
  2250. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/is_pow2.pro +0 -0
  2251. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/is_prime.pro +0 -0
  2252. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/mode_structure.pro +0 -0
  2253. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/moment_xyzt.pro +0 -0
  2254. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/new2old.pro +0 -0
  2255. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/next_double.pro +0 -0
  2256. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/next_prime.pro +0 -0
  2257. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/pdb2idl.pro +0 -0
  2258. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/phi2xi.pro +0 -0
  2259. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/plotpolslice.pro +0 -0
  2260. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/polslice.pro +0 -0
  2261. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/post_bout.pro +0 -0
  2262. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/range.pro +0 -0
  2263. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/read_1d.pro +0 -0
  2264. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/read_2d.pro +0 -0
  2265. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/read_aeqdsk.pro +0 -0
  2266. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/read_equ.pro +0 -0
  2267. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/read_neqdsk.pro +0 -0
  2268. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/regex_extract.pro +0 -0
  2269. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/resize_bgrid.pro +0 -0
  2270. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/resize_bgrid_var.pro +0 -0
  2271. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/reverse_inds.pro +0 -0
  2272. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/reverse_struct.pro +0 -0
  2273. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/safe_colors.pro +0 -0
  2274. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/scale_restarts.pro +0 -0
  2275. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/showdata.pro +0 -0
  2276. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/sign.pro +0 -0
  2277. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/spectrum.pro +0 -0
  2278. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/spline_mono.pro +0 -0
  2279. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/split_restarts.pro +0 -0
  2280. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/str.pro +0 -0
  2281. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/str_set.pro +0 -0
  2282. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/surface_average.pro +0 -0
  2283. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/tag_test.pro +0 -0
  2284. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/testfftrot2.pro +0 -0
  2285. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/total_p.pro +0 -0
  2286. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/volume_integral.pro +0 -0
  2287. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/volumeint.pro +0 -0
  2288. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/write_polslice.pro +0 -0
  2289. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/zfamp.pro +0 -0
  2290. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/zfilter.pro +0 -0
  2291. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/idllib/zshift.pro +0 -0
  2292. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/README +0 -0
  2293. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/apar_bicube_fft.pro +0 -0
  2294. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/apar_bilin_cube.pro +0 -0
  2295. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/apar_bilin_fft.pro +0 -0
  2296. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/apar_model.pro +0 -0
  2297. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/apar_trilin.pro +0 -0
  2298. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/boutapar.pro +0 -0
  2299. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/cp_bicube_fft.pro +0 -0
  2300. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/cp_bilin_cube.pro +0 -0
  2301. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/cp_bilin_fft.pro +0 -0
  2302. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/cp_tricube.pro +0 -0
  2303. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/cp_trilin.pro +0 -0
  2304. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/cubederiv.pro +0 -0
  2305. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/derivzapar.pro +0 -0
  2306. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/differential.pro +0 -0
  2307. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/doc/BOUT_Line_Tracing.pdf +0 -0
  2308. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/fft_back.pro +0 -0
  2309. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/fft_real.pro +0 -0
  2310. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/fieldtrace.pro +0 -0
  2311. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/fmodulo.pro +0 -0
  2312. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/fun_c12.pro +0 -0
  2313. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/integrationstep.pro +0 -0
  2314. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/interp_bicube.pro +0 -0
  2315. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/interp_cube.pro +0 -0
  2316. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/interpzapar.pro +0 -0
  2317. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/island_evol.pro +0 -0
  2318. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/mc_bicube.pro +0 -0
  2319. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/mc_bilin.pro +0 -0
  2320. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/mc_close.pro +0 -0
  2321. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/misc/HOPPER_MT_Poincare.pbs +0 -0
  2322. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/misc/MT_README +0 -0
  2323. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/misc/Sample_IDL_STARTUP +0 -0
  2324. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/misc/mt_poincare.pro +0 -0
  2325. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/modelapar.pro +0 -0
  2326. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/modelapar2.pro +0 -0
  2327. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/poincare.pro +0 -0
  2328. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/poincare_main.pro +0 -0
  2329. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/pressure_plot.pro +0 -0
  2330. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/safetyfactor.pro +0 -0
  2331. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/show_qprofile.pro +0 -0
  2332. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing/twistshift.pro +0 -0
  2333. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/MISC/HOPPER_MT_Poincare.pbs +0 -0
  2334. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/MISC/MT_README +0 -0
  2335. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/MISC/Sample_IDL_STARTUP +0 -0
  2336. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/MISC/mt_poincare.pro +0 -0
  2337. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/README +0 -0
  2338. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/apar_bicube_fft.pro +0 -0
  2339. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/apar_model.pro +0 -0
  2340. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/apar_tricube.pro +0 -0
  2341. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/cp_bicube_fft.pro +0 -0
  2342. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/differential.pro +0 -0
  2343. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/doc/BOUT_Line_Tracing.pdf +0 -0
  2344. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/fft_real.pro +0 -0
  2345. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/fieldtrace.pro +0 -0
  2346. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/fmodulo.pro +0 -0
  2347. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/fun_c12.pro +0 -0
  2348. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/interp_bicube.pro +0 -0
  2349. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/interp_tricube.pro +0 -0
  2350. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/interp_tricube.pro.old +0 -0
  2351. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/island_evol.pro +0 -0
  2352. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/make_tricube_mat.pro +0 -0
  2353. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/make_tricube_vec.pro +0 -0
  2354. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/mc_bicube.pro +0 -0
  2355. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/newtfunc.pro +0 -0
  2356. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/num_int_cn.pro +0 -0
  2357. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/num_int_rk4.pro +0 -0
  2358. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/poincare.pro +0 -0
  2359. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/poincare_main.pro +0 -0
  2360. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/pressure_plot.pro +0 -0
  2361. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/safetyfactor.pro +0 -0
  2362. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/show_qprofile.pro +0 -0
  2363. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/line_tracing_v2/twistshift.pro +0 -0
  2364. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/mathematicalib/BoutCollect.m +0 -0
  2365. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/matlablib/README.txt +0 -0
  2366. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/matlablib/growth_rate.m +0 -0
  2367. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/matlablib/import_data_netcdf.m +0 -0
  2368. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/matlablib/import_dmp.m +0 -0
  2369. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/matlablib/info_file.m +0 -0
  2370. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/matlablib/modify_pressure.m +0 -0
  2371. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/matlablib/moment.m +0 -0
  2372. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/matlablib/plot_pol_slice.m +0 -0
  2373. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/matlablib/showdata.m +0 -0
  2374. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/matlablib/zinterp.m +0 -0
  2375. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/numlib/acdc.pro +0 -0
  2376. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/numlib/chop.pro +0 -0
  2377. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/numlib/cycdiag.pro +0 -0
  2378. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/numlib/dctfilter.pro +0 -0
  2379. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/numlib/ddtheta.pro +0 -0
  2380. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/numlib/ddx.pro +0 -0
  2381. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/numlib/ddy.pro +0 -0
  2382. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/numlib/ddz.pro +0 -0
  2383. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/numlib/deriv_fct1d.pro +0 -0
  2384. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/numlib/deriv_fft1d.pro +0 -0
  2385. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/numlib/factor.pro +0 -0
  2386. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/numlib/filter_dct2d.pro +0 -0
  2387. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/numlib/filter_fct1d.pro +0 -0
  2388. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/numlib/filter_fft1d.pro +0 -0
  2389. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/numlib/gcd.pro +0 -0
  2390. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/numlib/growth_rms.pro +0 -0
  2391. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/numlib/growth_spec.pro +0 -0
  2392. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/numlib/intx.pro +0 -0
  2393. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/numlib/inty.pro +0 -0
  2394. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/numlib/intz.pro +0 -0
  2395. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/numlib/nproc.pro +0 -0
  2396. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/numlib/prime.pro +0 -0
  2397. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/numlib/sinc.pro +0 -0
  2398. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/numlib/splder.pro +0 -0
  2399. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/numlib/splgen.pro +0 -0
  2400. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/numlib/splint.pro +0 -0
  2401. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/numlib/tridiag.pro +0 -0
  2402. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/octave/bcollect.m +0 -0
  2403. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/octave/bread.m +0 -0
  2404. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/octave/bsettrange.m +0 -0
  2405. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/octave/bsetxrange.m +0 -0
  2406. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/octave/bsetyrange.m +0 -0
  2407. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/octave/bsetzrange.m +0 -0
  2408. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pdb2idl/Makefile +0 -0
  2409. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pdb2idl/README +0 -0
  2410. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pdb2idl/compile.pro +0 -0
  2411. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pdb2idl/configure +0 -0
  2412. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pdb2idl/configure.ac +0 -0
  2413. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pdb2idl/pdb2idl.c +0 -0
  2414. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pdb2idl/utils.c +0 -0
  2415. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pdb2idl/utils.h +0 -0
  2416. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/plasmalib/collisions.pro +0 -0
  2417. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/plasmalib/physical_constants.pro +0 -0
  2418. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/plasmalib/set_plasma.pro +0 -0
  2419. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/.gitignore +0 -0
  2420. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/Makefile +0 -0
  2421. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/README.md +0 -0
  2422. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/_boutpp_build/.gitignore +0 -0
  2423. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/_boutpp_build/CMakeLists.txt +0 -0
  2424. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/_boutpp_build/GENERATION.md +0 -0
  2425. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/_boutpp_build/Makefile +0 -0
  2426. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/_boutpp_build/backend.py +0 -0
  2427. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/_boutpp_build/bout_options.pxd +0 -0
  2428. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/_boutpp_build/boutcpp.pxd.jinja +0 -0
  2429. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/_boutpp_build/boutexception_helper.cxx +0 -0
  2430. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/_boutpp_build/boutexception_helper.hxx +0 -0
  2431. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/_boutpp_build/boutpp.py +0 -0
  2432. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/_boutpp_build/boutpp.pyx.jinja +0 -0
  2433. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/_boutpp_build/boutpp_openmpi_compat.hxx +0 -0
  2434. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/_boutpp_build/debug_helper.hxx +0 -0
  2435. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/_boutpp_build/debug_setup.py +0 -0
  2436. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/_boutpp_build/generate.py +0 -0
  2437. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/_boutpp_build/geninput.py +0 -0
  2438. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/_boutpp_build/helper.cxx.jinja +0 -0
  2439. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/_boutpp_build/helper.h.jinja +0 -0
  2440. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/_boutpp_build/helper.py +0 -0
  2441. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/_boutpp_build/other_enums.hxx +0 -0
  2442. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/_boutpp_build/resolve_enum.pxd.jinja +0 -0
  2443. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/_boutpp_build/resolve_enum_inv.pyx.jinja +0 -0
  2444. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/_boutpp_build/scan_enums.py +0 -0
  2445. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/_boutpp_build/setup.py +0 -0
  2446. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/boutconfig/__init__.py.cin +0 -0
  2447. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/boutconfig/__init__.py.in +0 -0
  2448. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/boutdata +0 -0
  2449. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/pylib/boututils +0 -0
  2450. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/slab/slab.pro +0 -0
  2451. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/README +0 -0
  2452. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/all/bout_output.pro +0 -0
  2453. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/all/check_curv.pro +0 -0
  2454. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/all/curvature.pro +0 -0
  2455. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/all/deriv_weno.pro +0 -0
  2456. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/all/fft_interp.pro +0 -0
  2457. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/all/gen_orthog.pro +0 -0
  2458. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/all/gen_orthog2.pro +0 -0
  2459. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/all/grid2bout.py +0 -0
  2460. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/all/pdb2bout.pro +0 -0
  2461. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/all/refine_x.pro +0 -0
  2462. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/all/uedge2bout.pro +0 -0
  2463. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/all/uedge_correct.pro +0 -0
  2464. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/all/vacuum.pro +0 -0
  2465. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/all/xinterp.pro +0 -0
  2466. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/coils/README +0 -0
  2467. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/coils/coils.cxx +0 -0
  2468. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/coils/coils.h +0 -0
  2469. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/coils/coils.pro +0 -0
  2470. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/coils/ergos_plot.pro +0 -0
  2471. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/coils/surface/surface_coil.pro +0 -0
  2472. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/cyclone/cyclone.pro +0 -0
  2473. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/cyclone/cyclone.py +0 -0
  2474. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/elite/Makefile +0 -0
  2475. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/elite/elite2nc +0 -0
  2476. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/elite/elite2pdb.c +0 -0
  2477. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/gato/Makefile +0 -0
  2478. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/gato/gato2nc +0 -0
  2479. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/gato/gato2pdb.c +0 -0
  2480. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/gato/read_gato.c +0 -0
  2481. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/gato/read_gato.h +0 -0
  2482. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/shifted_circle/README +0 -0
  2483. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/shifted_circle/gen_series.pro +0 -0
  2484. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/shifted_circle/generate.pro +0 -0
  2485. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/shifted_circle/get_delta.pro +0 -0
  2486. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/shifted_circle/in_list.pro +0 -0
  2487. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/shifted_circle/read_uedge.pro +0 -0
  2488. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/shifted_circle/set_mesh_shcir.pro +0 -0
  2489. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/tools/tokamak_grids/shifted_circle/set_params.pro +0 -0
  2490. {boutpp_nightly-5.2.1.dev1161 → boutpp_nightly-5.2.1.dev1222}/uv.lock +0 -0
@@ -0,0 +1,1103 @@
1
+ cmake_minimum_required(VERSION 3.17...3.20)
2
+ if(${CMAKE_VERSION} VERSION_LESS 3.20)
3
+ cmake_policy(VERSION ${CMAKE_MAJOR_VERSION}.${CMAKE_MINOR_VERSION})
4
+ else()
5
+ cmake_policy(VERSION 3.17)
6
+ endif()
7
+
8
+ # Find python based on version
9
+ if(${CMAKE_VERSION} VERSION_GREATER_EQUAL 3.15)
10
+ cmake_policy(SET CMP0094 NEW)
11
+ endif()
12
+ cmake_policy(SET CMP0095 NEW)
13
+ # We support the new syntax, so avoid deprecation warning
14
+ if(${CMAKE_VERSION} VERSION_GREATER_EQUAL 3.22)
15
+ cmake_policy(SET CMP0127 NEW)
16
+ endif()
17
+
18
+ if("${CMAKE_CURRENT_BINARY_DIR}" STREQUAL "${CMAKE_CURRENT_SOURCE_DIR}")
19
+ option(BOUT_ALLOW_INSOURCE_BUILD
20
+ "Whether BOUT++ should really allow to build in source." OFF
21
+ )
22
+ if(NOT ${BOUT_ALLOW_INSOURCE_BUILD})
23
+ message(
24
+ FATAL_ERROR
25
+ "BOUT++ does not recommend in source builds. Try building out of source, e.g. with `cmake -S . -B build` or set -DBOUT_ALLOW_INSOURCE_BUILD=ON - but things may break!"
26
+ )
27
+ endif()
28
+ endif()
29
+
30
+ # CMake currently doesn't support proper semver
31
+ # Set the version here, strip any extra tags to use in `project`
32
+ # We try to use git to get a full description, inspired by setuptools_scm
33
+ set(_bout_previous_version "5.2.0")
34
+ set(_bout_next_version "5.2.1")
35
+ execute_process(
36
+ COMMAND "git" describe --tags --match=v${_bout_previous_version}
37
+ COMMAND sed -e s/${_bout_previous_version}-/${_bout_next_version}.dev/ -e
38
+ s/-/+/ RESULTS_VARIABLE error_codes
39
+ OUTPUT_VARIABLE BOUT_FULL_VERSION
40
+ OUTPUT_STRIP_TRAILING_WHITESPACE
41
+ )
42
+
43
+ foreach(error_code ${error_codes})
44
+ if(NOT ${error_code} STREQUAL 0)
45
+ set(BOUT_FULL_VERSION ${_bout_next_version})
46
+ endif()
47
+ endforeach()
48
+ # Remove leading "v"
49
+ string(REGEX REPLACE "^v(.*)" "\\1" BOUT_FULL_VERSION ${BOUT_FULL_VERSION})
50
+ # Remove trailing tag
51
+ string(REGEX REPLACE "^([0-9]+\.[0-9]+\.[0-9]+)\..*" "\\1"
52
+ BOUT_CMAKE_ACCEPTABLE_VERSION ${BOUT_FULL_VERSION}
53
+ )
54
+ # Get the trailing tag
55
+ string(REGEX REPLACE "^[0-9]+\.[0-9]+\.[0-9]+\.(.*)" "\\1" BOUT_VERSION_TAG
56
+ ${BOUT_FULL_VERSION}
57
+ )
58
+
59
+ message(STATUS "Configuring BOUT++ version ${BOUT_FULL_VERSION}")
60
+ project(
61
+ BOUT++
62
+ DESCRIPTION "Fluid PDE solver framework"
63
+ VERSION ${BOUT_CMAKE_ACCEPTABLE_VERSION}
64
+ LANGUAGES CXX
65
+ )
66
+
67
+ include(CMakeDependentOption)
68
+
69
+ option(BUILD_SHARED_LIBS "Build shared libs" ON)
70
+
71
+ # Override default
72
+ option(
73
+ INSTALL_GTEST
74
+ "Enable installation of googletest. (Projects embedding googletest may want to turn this OFF.)"
75
+ OFF
76
+ )
77
+
78
+ set(CMAKE_MODULE_PATH "${PROJECT_SOURCE_DIR}/cmake" ${CMAKE_MODULE_PATH})
79
+ include(BOUT++functions)
80
+
81
+ option(BOUT_UPDATE_GIT_SUBMODULE "Check submodules are up-to-date during build"
82
+ ON
83
+ )
84
+ # Adapted from https://cliutils.gitlab.io/modern-cmake/chapters/projects/submodule.html
85
+ # Update submodules as needed
86
+ function(bout_update_submodules)
87
+ if(NOT BOUT_UPDATE_GIT_SUBMODULE)
88
+ return()
89
+ endif()
90
+ find_package(Git QUIET)
91
+ if(GIT_FOUND AND EXISTS "${PROJECT_SOURCE_DIR}/.git")
92
+ message(STATUS "Submodule update")
93
+ execute_process(
94
+ COMMAND ${GIT_EXECUTABLE} -c submodule.recurse=false submodule update
95
+ --init --recursive
96
+ WORKING_DIRECTORY ${PROJECT_SOURCE_DIR}
97
+ RESULT_VARIABLE GIT_SUBMOD_RESULT
98
+ )
99
+ if(NOT GIT_SUBMOD_RESULT EQUAL "0")
100
+ message(
101
+ FATAL_ERROR
102
+ "git submodule update --init failed with ${GIT_SUBMOD_RESULT}, please checkout submodules"
103
+ )
104
+ endif()
105
+ endif()
106
+ endfunction()
107
+
108
+ set(BOUT_SOURCES
109
+ ./include/bout/adios_object.hxx
110
+ ./include/bout/array.hxx
111
+ ./include/bout/assert.hxx
112
+ ./include/bout/boundary_factory.hxx
113
+ ./include/bout/boundary_op.hxx
114
+ ./include/bout/boundary_region.hxx
115
+ ./include/bout/boundary_standard.hxx
116
+ ./include/bout/bout.hxx
117
+ ./include/bout/bout_enum_class.hxx
118
+ ./include/bout/bout_types.hxx
119
+ ./include/bout/build_config.hxx
120
+ ./include/bout/boutcomm.hxx
121
+ ./include/bout/boutexception.hxx
122
+ ./include/bout/caliper_wrapper.hxx
123
+ ./include/bout/constants.hxx
124
+ ./include/bout/coordinates.hxx
125
+ ./include/bout/coordinates_accessor.hxx
126
+ ./include/bout/cyclic_reduction.hxx
127
+ ./include/bout/dcomplex.hxx
128
+ ./include/bout/deriv_store.hxx
129
+ ./include/bout/derivs.hxx
130
+ ./include/bout/difops.hxx
131
+ ./include/bout/expr.hxx
132
+ ./include/bout/fft.hxx
133
+ ./include/bout/field.hxx
134
+ ./include/bout/field2d.hxx
135
+ ./include/bout/field3d.hxx
136
+ ./include/bout/field_accessor.hxx
137
+ ./include/bout/field_data.hxx
138
+ ./include/bout/field_factory.hxx
139
+ ./include/bout/fieldops.hxx
140
+ ./include/bout/fieldgroup.hxx
141
+ ./include/bout/fieldperp.hxx
142
+ ./include/bout/fv_ops.hxx
143
+ ./include/bout/generic_factory.hxx
144
+ ./include/bout/globalfield.hxx
145
+ ./include/bout/globalindexer.hxx
146
+ ./include/bout/globals.hxx
147
+ ./include/bout/griddata.hxx
148
+ ./include/bout/gyro_average.hxx
149
+ ./include/bout/hypre_interface.hxx
150
+ ./include/bout/index_derivs.hxx
151
+ ./include/bout/index_derivs_interface.hxx
152
+ ./include/bout/initialprofiles.hxx
153
+ ./include/bout/interpolation.hxx
154
+ ./include/bout/interpolation_xz.hxx
155
+ ./include/bout/interpolation_z.hxx
156
+ ./include/bout/invert/laplacexy.hxx
157
+ ./include/bout/invert/laplacexz.hxx
158
+ ./include/bout/invert_laplace.hxx
159
+ ./include/bout/invert_parderiv.hxx
160
+ ./include/bout/invert_pardiv.hxx
161
+ ./include/bout/invertable_operator.hxx
162
+ ./include/bout/lapack_routines.hxx
163
+ ./include/bout/macro_for_each.hxx
164
+ ./include/bout/mask.hxx
165
+ ./include/bout/mesh.hxx
166
+ ./include/bout/monitor.hxx
167
+ ./include/bout/mpi_wrapper.hxx
168
+ ./include/bout/msg_stack.hxx
169
+ ./include/bout/multiostream.hxx
170
+ ./include/bout/openmpwrap.hxx
171
+ ./include/bout/operatorstencil.hxx
172
+ ./include/bout/options.hxx
173
+ ./include/bout/options_io.hxx
174
+ ./include/bout/optionsreader.hxx
175
+ ./include/bout/output.hxx
176
+ ./include/bout/output_bout_types.hxx
177
+ ./include/bout/parallel_boundary_op.hxx
178
+ ./include/bout/parallel_boundary_region.hxx
179
+ ./include/bout/paralleltransform.hxx
180
+ ./include/bout/petsc_interface.hxx
181
+ ./include/bout/petsclib.hxx
182
+ ./include/bout/physicsmodel.hxx
183
+ ./include/bout/rajalib.hxx
184
+ ./include/bout/region.hxx
185
+ ./include/bout/rkscheme.hxx
186
+ ./include/bout/rvec.hxx
187
+ ./include/bout/scorepwrapper.hxx
188
+ ./include/bout/single_index_ops.hxx
189
+ ./include/bout/slepclib.hxx
190
+ ./include/bout/smoothing.hxx
191
+ ./include/bout/snb.hxx
192
+ ./include/bout/solver.hxx
193
+ ./include/bout/solverfactory.hxx
194
+ ./include/bout/sourcex.hxx
195
+ ./include/bout/stencils.hxx
196
+ ./include/bout/sundials_backports.hxx
197
+ ./include/bout/surfaceiter.hxx
198
+ ./include/bout/sys/expressionparser.hxx
199
+ ./include/bout/sys/generator_context.hxx
200
+ ./include/bout/sys/gettext.hxx
201
+ ./include/bout/sys/range.hxx
202
+ ./include/bout/sys/timer.hxx
203
+ ./include/bout/sys/type_name.hxx
204
+ ./include/bout/sys/uncopyable.hxx
205
+ ./include/bout/sys/uuid.h
206
+ ./include/bout/sys/variant.hxx
207
+ ./include/bout/template_combinations.hxx
208
+ ./include/bout/tokamak_coordinates.hxx
209
+ ./include/bout/traits.hxx
210
+ ./include/bout/twiddle.hxx
211
+ ./include/bout/unused.hxx
212
+ ./include/bout/utils.hxx
213
+ ./include/bout/vecops.hxx
214
+ ./include/bout/vector2d.hxx
215
+ ./include/bout/vector3d.hxx
216
+ ./include/bout/where.hxx
217
+ ./src/bout++.cxx
218
+ ./src/bout++-time.hxx
219
+ ./src/field/field.cxx
220
+ ./src/field/field2d.cxx
221
+ ./src/field/field3d.cxx
222
+ ./src/field/field_data.cxx
223
+ ./src/field/field_factory.cxx
224
+ ./src/field/fieldgenerators.cxx
225
+ ./src/field/fieldgenerators.hxx
226
+ ./src/field/fieldgroup.cxx
227
+ ./src/field/fieldperp.cxx
228
+ ./src/field/generated_fieldops.cxx
229
+ ./src/field/globalfield.cxx
230
+ ./src/field/initialprofiles.cxx
231
+ ./src/field/vecops.cxx
232
+ ./src/field/vector2d.cxx
233
+ ./src/field/vector3d.cxx
234
+ ./src/field/where.cxx
235
+ ./src/invert/fft_fftw.cxx
236
+ ./src/invert/lapack_routines.cxx
237
+ ./src/invert/laplace/common_transform.cxx
238
+ ./src/invert/laplace/common_transform.hxx
239
+ ./src/invert/laplace/impls/cyclic/cyclic_laplace.cxx
240
+ ./src/invert/laplace/impls/cyclic/cyclic_laplace.hxx
241
+ ./src/invert/laplace/impls/iterative_parallel_tri/iterative_parallel_tri.cxx
242
+ ./src/invert/laplace/impls/iterative_parallel_tri/iterative_parallel_tri.hxx
243
+ ./src/invert/laplace/impls/multigrid/multigrid_alg.cxx
244
+ ./src/invert/laplace/impls/multigrid/multigrid_laplace.cxx
245
+ ./src/invert/laplace/impls/multigrid/multigrid_laplace.hxx
246
+ ./src/invert/laplace/impls/multigrid/multigrid_solver.cxx
247
+ ./src/invert/laplace/impls/naulin/naulin_laplace.cxx
248
+ ./src/invert/laplace/impls/naulin/naulin_laplace.hxx
249
+ ./src/invert/laplace/impls/pcr/pcr.cxx
250
+ ./src/invert/laplace/impls/pcr/pcr.hxx
251
+ ./src/invert/laplace/impls/pcr_thomas/pcr_thomas.cxx
252
+ ./src/invert/laplace/impls/pcr_thomas/pcr_thomas.hxx
253
+ ./src/invert/laplace/impls/petsc/petsc_laplace.cxx
254
+ ./src/invert/laplace/impls/petsc/petsc_laplace.hxx
255
+ ./src/invert/laplace/impls/petsc3damg/petsc3damg.cxx
256
+ ./src/invert/laplace/impls/petsc3damg/petsc3damg.hxx
257
+ ./src/invert/laplace/impls/serial_band/serial_band.cxx
258
+ ./src/invert/laplace/impls/serial_band/serial_band.hxx
259
+ ./src/invert/laplace/impls/serial_tri/serial_tri.cxx
260
+ ./src/invert/laplace/impls/serial_tri/serial_tri.hxx
261
+ ./src/invert/laplace/impls/spt/spt.cxx
262
+ ./src/invert/laplace/impls/spt/spt.hxx
263
+ ./src/invert/laplace/impls/hypre3d/hypre3d_laplace.cxx
264
+ ./src/invert/laplace/impls/hypre3d/hypre3d_laplace.hxx
265
+ ./src/invert/laplace/invert_laplace.cxx
266
+ ./src/invert/laplacexy/impls/hypre/laplacexy-hypre.cxx
267
+ ./src/invert/laplacexy/impls/hypre/laplacexy-hypre.hxx
268
+ ./src/invert/laplacexy/impls/petsc/laplacexy-petsc.cxx
269
+ ./src/invert/laplacexy/impls/petsc/laplacexy-petsc.hxx
270
+ ./src/invert/laplacexy/impls/petsc2/laplacexy-petsc2.cxx
271
+ ./src/invert/laplacexy/impls/petsc2/laplacexy-petsc2.hxx
272
+ ./src/invert/laplacexy/laplacexy.cxx
273
+ ./src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.cxx
274
+ ./src/invert/laplacexz/impls/cyclic/laplacexz-cyclic.hxx
275
+ ./src/invert/laplacexz/impls/petsc/laplacexz-petsc.cxx
276
+ ./src/invert/laplacexz/impls/petsc/laplacexz-petsc.hxx
277
+ ./src/invert/laplacexz/laplacexz.cxx
278
+ ./src/invert/parderiv/impls/cyclic/cyclic.cxx
279
+ ./src/invert/parderiv/impls/cyclic/cyclic.hxx
280
+ ./src/invert/parderiv/invert_parderiv.cxx
281
+ ./src/invert/pardiv/impls/cyclic/pardiv_cyclic.cxx
282
+ ./src/invert/pardiv/impls/cyclic/pardiv_cyclic.hxx
283
+ ./src/invert/pardiv/invert_pardiv.cxx
284
+ ./src/mesh/boundary_factory.cxx
285
+ ./src/mesh/boundary_region.cxx
286
+ ./src/mesh/boundary_standard.cxx
287
+ ./src/mesh/coordinates.cxx
288
+ ./src/mesh/coordinates_accessor.cxx
289
+ ./src/mesh/data/gridfromfile.cxx
290
+ ./src/mesh/data/gridfromoptions.cxx
291
+ ./src/mesh/difops.cxx
292
+ ./src/mesh/fv_ops.cxx
293
+ ./src/mesh/impls/bout/boutmesh.cxx
294
+ ./src/mesh/impls/bout/boutmesh.hxx
295
+ ./src/mesh/index_derivs.cxx
296
+ ./src/mesh/interpolation_xz.cxx
297
+ ./src/mesh/interpolation/bilinear_xz.cxx
298
+ ./src/mesh/interpolation/hermite_spline_xz.cxx
299
+ ./src/mesh/interpolation/hermite_spline_z.cxx
300
+ ./src/mesh/interpolation/interpolation_z.cxx
301
+ ./src/mesh/interpolation/lagrange_4pt_xz.cxx
302
+ ./src/mesh/invert3x3.hxx
303
+ ./src/mesh/mesh.cxx
304
+ ./src/mesh/parallel/fci.cxx
305
+ ./src/mesh/parallel/fci.hxx
306
+ ./src/mesh/parallel/fci_comm.cxx
307
+ ./src/mesh/parallel/fci_comm.hxx
308
+ ./src/mesh/parallel/identity.cxx
309
+ ./src/mesh/parallel/shiftedmetric.cxx
310
+ ./src/mesh/parallel/shiftedmetricinterp.cxx
311
+ ./src/mesh/parallel/shiftedmetricinterp.hxx
312
+ ./src/mesh/parallel_boundary_op.cxx
313
+ ./src/mesh/parallel_boundary_region.cxx
314
+ ./src/mesh/surfaceiter.cxx
315
+ ./src/mesh/tokamak_coordinates.cxx
316
+ ./src/physics/gyro_average.cxx
317
+ ./src/physics/physicsmodel.cxx
318
+ ./src/physics/smoothing.cxx
319
+ ./src/physics/snb.cxx
320
+ ./src/physics/sourcex.cxx
321
+ ./src/solver/impls/adams_bashforth/adams_bashforth.cxx
322
+ ./src/solver/impls/adams_bashforth/adams_bashforth.hxx
323
+ ./src/solver/impls/arkode/arkode.cxx
324
+ ./src/solver/impls/arkode/arkode.hxx
325
+ ./src/solver/impls/cvode/cvode.cxx
326
+ ./src/solver/impls/cvode/cvode.hxx
327
+ ./src/solver/impls/euler/euler.cxx
328
+ ./src/solver/impls/euler/euler.hxx
329
+ ./src/solver/impls/ida/ida.cxx
330
+ ./src/solver/impls/ida/ida.hxx
331
+ ./src/solver/impls/imex-bdf2/imex-bdf2.cxx
332
+ ./src/solver/impls/imex-bdf2/imex-bdf2.hxx
333
+ ./src/solver/impls/petsc/petsc.cxx
334
+ ./src/solver/impls/petsc/petsc.hxx
335
+ ./src/solver/impls/power/power.cxx
336
+ ./src/solver/impls/power/power.hxx
337
+ ./src/solver/impls/pvode/pvode.cxx
338
+ ./src/solver/impls/pvode/pvode.hxx
339
+ ./src/solver/impls/rk3-ssp/rk3-ssp.cxx
340
+ ./src/solver/impls/rk3-ssp/rk3-ssp.hxx
341
+ ./src/solver/impls/rk4/rk4.cxx
342
+ ./src/solver/impls/rk4/rk4.hxx
343
+ ./src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.cxx
344
+ ./src/solver/impls/rkgeneric/impls/cashkarp/cashkarp.hxx
345
+ ./src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.cxx
346
+ ./src/solver/impls/rkgeneric/impls/rk4simple/rk4simple.hxx
347
+ ./src/solver/impls/rkgeneric/impls/rkf34/rkf34.cxx
348
+ ./src/solver/impls/rkgeneric/impls/rkf34/rkf34.hxx
349
+ ./src/solver/impls/rkgeneric/impls/rkf45/rkf45.cxx
350
+ ./src/solver/impls/rkgeneric/impls/rkf45/rkf45.hxx
351
+ ./src/solver/impls/rkgeneric/rkgeneric.cxx
352
+ ./src/solver/impls/rkgeneric/rkgeneric.hxx
353
+ ./src/solver/impls/rkgeneric/rkscheme.cxx
354
+ ./src/solver/impls/slepc/slepc.cxx
355
+ ./src/solver/impls/slepc/slepc.hxx
356
+ ./src/solver/impls/snes/snes.cxx
357
+ ./src/solver/impls/snes/snes.hxx
358
+ ./src/solver/impls/split-rk/split-rk.cxx
359
+ ./src/solver/impls/split-rk/split-rk.hxx
360
+ ./src/solver/solver.cxx
361
+ ./src/sys/adios_object.cxx
362
+ ./src/sys/bout_types.cxx
363
+ ./src/sys/boutcomm.cxx
364
+ ./src/sys/boutexception.cxx
365
+ ./src/sys/derivs.cxx
366
+ ./src/sys/expressionparser.cxx
367
+ ./src/sys/generator_context.cxx
368
+ ./include/bout/hyprelib.hxx
369
+ ./src/sys/hyprelib.cxx
370
+ ./src/sys/msg_stack.cxx
371
+ ./src/sys/options.cxx
372
+ ./src/sys/options/optionparser.hxx
373
+ ./src/sys/options/options_ini.cxx
374
+ ./src/sys/options/options_ini.hxx
375
+ ./src/sys/options/options_io.cxx
376
+ ./src/sys/options/options_netcdf.cxx
377
+ ./src/sys/options/options_netcdf.hxx
378
+ ./src/sys/options/options_adios.cxx
379
+ ./src/sys/options/options_adios.hxx
380
+ ./src/sys/optionsreader.cxx
381
+ ./src/sys/output.cxx
382
+ ./src/sys/output_bout_types.cxx
383
+ ./src/sys/petsclib.cxx
384
+ ./src/sys/range.cxx
385
+ ./src/sys/slepclib.cxx
386
+ ./src/sys/timer.cxx
387
+ ./src/sys/type_name.cxx
388
+ ./src/sys/utils.cxx
389
+ ${CMAKE_CURRENT_BINARY_DIR}/include/bout/revision.hxx
390
+ ${CMAKE_CURRENT_BINARY_DIR}/include/bout/version.hxx
391
+ )
392
+
393
+ find_package(Python3)
394
+ find_package(ClangFormat)
395
+
396
+ if(Python3_FOUND AND ClangFormat_FOUND)
397
+ set(BOUT_GENERATE_FIELDOPS_DEFAULT ON)
398
+ else()
399
+ set(BOUT_GENERATE_FIELDOPS_DEFAULT OFF)
400
+ endif()
401
+
402
+ execute_process(
403
+ COMMAND
404
+ ${Python3_EXECUTABLE} -c
405
+ "import importlib.util ; import sys; sys.exit(importlib.util.find_spec(\"zoidberg\") is None)"
406
+ RESULT_VARIABLE zoidberg_FOUND
407
+ )
408
+ if(zoidberg_FOUND EQUAL 0)
409
+ set(zoidberg_FOUND ON)
410
+ else()
411
+ set(zoidberg_FOUND OFF)
412
+ endif()
413
+ message(STATUS "Found Zoidberg for FCI tests: ${zoidberg_FOUND}")
414
+
415
+ option(
416
+ BOUT_GENERATE_FIELDOPS
417
+ "Automatically re-generate the Field arithmetic operators from the Python templates. \
418
+ Requires Python3, clang-format, and Jinja2. Turn this OFF to skip generating them if, for example, \
419
+ you are unable to install the Jinja2 Python module. This is only important for BOUT++ developers."
420
+ ${BOUT_GENERATE_FIELDOPS_DEFAULT}
421
+ )
422
+
423
+ if(BOUT_GENERATE_FIELDOPS)
424
+ if(NOT Python3_FOUND)
425
+ message(
426
+ FATAL_ERROR "python not found, but you have requested to generate code!"
427
+ )
428
+ endif()
429
+ if(NOT ClangFormat_FOUND)
430
+ message(
431
+ FATAL_ERROR
432
+ "clang-format not found, but you have requested to generate code!"
433
+ )
434
+ endif()
435
+ if(BOUT_ENABLE_RAJA)
436
+ set(GEN_LOOP_EXEC "raja")
437
+ elseif(BOUT_ENABLE_OPENMP)
438
+ set(GEN_LOOP_EXEC "openmp")
439
+ else()
440
+ set(GEN_LOOP_EXEC "serial")
441
+ endif()
442
+ add_custom_command(
443
+ OUTPUT ${CMAKE_CURRENT_SOURCE_DIR}/src/field/generated_fieldops.cxx
444
+ COMMAND ${Python3_EXECUTABLE} gen_fieldops.py --loop-exec ${GEN_LOOP_EXEC}
445
+ --filename generated_fieldops.cxx.tmp
446
+ COMMAND ${ClangFormat_BIN} generated_fieldops.cxx.tmp -i
447
+ COMMAND ${CMAKE_COMMAND} -E rename generated_fieldops.cxx.tmp
448
+ generated_fieldops.cxx
449
+ DEPENDS ${CMAKE_CURRENT_SOURCE_DIR}/src/field/gen_fieldops.jinja
450
+ ${CMAKE_CURRENT_SOURCE_DIR}/src/field/gen_fieldops.py
451
+ WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}/src/field/
452
+ COMMENT "Generating source code"
453
+ )
454
+ else()
455
+ message(
456
+ AUTHOR_WARNING
457
+ "'src/field/generated_fieldops.cxx' will not be \
458
+ regenerated when you make changes to either \
459
+ 'src/field/gen_fieldops.py' or 'src/field/gen_fieldops.jinja'. \
460
+ This is because either Python3 or clang-format is missing \
461
+ (see above messages for more information) \
462
+ or BOUT_GENERATE_FIELDOPS is OFF (current value: ${BOUT_GENERATE_FIELDOPS}). \
463
+ This warning is only important for BOUT++ developers and can otherwise be \
464
+ safely ignored."
465
+ )
466
+ endif()
467
+
468
+ include(GNUInstallDirs)
469
+
470
+ # use, i.e. don't skip the full RPATH for the build tree
471
+ set(CMAKE_SKIP_BUILD_RPATH FALSE)
472
+
473
+ # when building, don't use the install RPATH already
474
+ # (but later on when installing)
475
+ set(CMAKE_BUILD_WITH_INSTALL_RPATH FALSE)
476
+ set(CMAKE_INSTALL_RPATH "${CMAKE_INSTALL_PREFIX}/${CMAKE_INSTALL_LIBDIR}")
477
+
478
+ # add the automatically determined parts of the RPATH
479
+ # which point to directories outside the build tree to the install RPATH
480
+ set(CMAKE_INSTALL_RPATH_USE_LINK_PATH TRUE)
481
+
482
+ execute_process(
483
+ COMMAND
484
+ ${Python3_EXECUTABLE} -c
485
+ "import site ; print('/'.join(site.getusersitepackages().split('/')[-2:]))"
486
+ RESULT_VARIABLE PYTHON_WORKING
487
+ OUTPUT_VARIABLE PYTHON_SITEPATH_SUFFIX
488
+ OUTPUT_STRIP_TRAILING_WHITESPACE
489
+ )
490
+ set(CMAKE_INSTALL_PYTHON_SITEARCH
491
+ lib/${PYTHON_SITEPATH_SUFFIX}
492
+ CACHE STRING "Location to install python arch-specific modules"
493
+ )
494
+
495
+ set(ON_OFF_AUTO ON OFF AUTO)
496
+ set(BOUT_ENABLE_PYTHON
497
+ AUTO
498
+ CACHE STRING "Build the Python interface"
499
+ )
500
+ set_property(CACHE BOUT_ENABLE_PYTHON PROPERTY STRINGS ${ON_OFF_AUTO})
501
+ if(NOT BOUT_ENABLE_PYTHON IN_LIST ON_OFF_AUTO)
502
+ message(FATAL_ERROR "BOUT_ENABLE_PYTHON must be one of ${ON_OFF_AUTO}")
503
+ endif()
504
+ if(BOUT_ENABLE_PYTHON OR BOUT_ENABLE_PYTHON STREQUAL "AUTO")
505
+ add_subdirectory(tools/pylib/_boutpp_build)
506
+ else()
507
+ set(BOUT_ENABLE_PYTHON OFF)
508
+ endif()
509
+ set(BOUT_USE_PYTHON ${BOUT_ENABLE_PYTHON})
510
+
511
+ # Ensure that the compile date/time is up-to-date when any of the sources change
512
+ add_custom_command(
513
+ OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/bout++-time.cxx
514
+ COMMAND ${CMAKE_COMMAND} -P
515
+ "${CMAKE_CURRENT_LIST_DIR}/cmake/GenerateDateTimeFile.cmake"
516
+ DEPENDS ${BOUT_SOURCES}
517
+ MAIN_DEPENDENCY "${CMAKE_CURRENT_LIST_DIR}/cmake/GenerateDateTimeFile.cmake"
518
+ )
519
+
520
+ add_library(bout++ ${BOUT_SOURCES} ${CMAKE_CURRENT_BINARY_DIR}/bout++-time.cxx)
521
+ add_library(bout++::bout++ ALIAS bout++)
522
+ target_link_libraries(bout++ PUBLIC MPI::MPI_CXX)
523
+ target_include_directories(
524
+ bout++
525
+ PUBLIC $<BUILD_INTERFACE:${CMAKE_CURRENT_SOURCE_DIR}/include>
526
+ $<BUILD_INTERFACE:${CMAKE_CURRENT_BINARY_DIR}/include>
527
+ $<INSTALL_INTERFACE:include>
528
+ )
529
+ set(BOUT_LIB_PATH "${CMAKE_CURRENT_BINARY_DIR}/lib")
530
+ set_target_properties(
531
+ bout++
532
+ PROPERTIES LIBRARY_OUTPUT_DIRECTORY "${BOUT_LIB_PATH}"
533
+ ARCHIVE_OUTPUT_DIRECTORY "${BOUT_LIB_PATH}"
534
+ SOVERSION 5.2.0
535
+ )
536
+
537
+ # Set some variables for the bout-config script
538
+ set(CONFIG_LDFLAGS "${CONFIG_LDFLAGS} -L\$BOUT_LIB_PATH -lbout++")
539
+ set(BOUT_INCLUDE_PATH "${CMAKE_CURRENT_SOURCE_DIR}/include")
540
+ set(CONFIG_CFLAGS
541
+ "${CONFIG_CFLAGS} -I\${BOUT_INCLUDE_PATH} -I${CMAKE_CURRENT_BINARY_DIR}/include ${CMAKE_CXX_FLAGS} -std=c++20"
542
+ )
543
+
544
+ target_compile_features(bout++ PUBLIC cxx_std_20)
545
+ set_target_properties(bout++ PROPERTIES CXX_EXTENSIONS OFF)
546
+
547
+ # Optional compiler features
548
+ include(cmake/SetupCompilers.cmake)
549
+
550
+ # Optional dependencies
551
+ include(cmake/SetupBOUTThirdParty.cmake)
552
+
553
+ # Various sanitizers, including coverage and address sanitizer
554
+ include(cmake/Sanitizers.cmake)
555
+ enable_sanitizers(bout++)
556
+
557
+ ##################################################
558
+ # Components of the version number
559
+ # Pre-release identifier (BOUT_VERSION_TAG) set above
560
+ set(BOUT_VERSION ${BOUT_FULL_VERSION})
561
+ set(BOUT_VERSION_MAJOR ${PROJECT_VERSION_MAJOR})
562
+ set(BOUT_VERSION_MINOR ${PROJECT_VERSION_MINOR})
563
+ set(BOUT_VERSION_PATCH ${PROJECT_VERSION_PATCH})
564
+
565
+ # Get the git commit
566
+ include(GetGitRevisionDescription)
567
+ get_git_head_revision(GIT_REFSPEC BOUT_REVISION)
568
+ if(BOUT_REVISION STREQUAL "GITDIR-NOTFOUND")
569
+ set(BOUT_REVISION "Unknown")
570
+ endif()
571
+ message(STATUS "Git revision: ${BOUT_REVISION}")
572
+
573
+ # Build the file containing the version information
574
+ configure_file(
575
+ "${PROJECT_SOURCE_DIR}/include/bout/version.hxx.in"
576
+ "${PROJECT_BINARY_DIR}/include/bout/version.hxx"
577
+ )
578
+ # Build the file containing just the commit hash
579
+ # This will be rebuilt on every commit!
580
+ configure_file(
581
+ "${PROJECT_SOURCE_DIR}/include/bout/revision.hxx.in"
582
+ "${PROJECT_BINARY_DIR}/include/bout/revision.hxx"
583
+ )
584
+
585
+ ##################################################
586
+
587
+ option(BOUT_ENABLE_WARNINGS "Enable compiler warnings" ON)
588
+ if(BOUT_ENABLE_WARNINGS)
589
+ target_compile_options(
590
+ bout++
591
+ PRIVATE
592
+ $<$<NOT:$<COMPILE_LANGUAGE:CUDA>>:
593
+ $<$<OR:$<CXX_COMPILER_ID:GNU>,$<CXX_COMPILER_ID:Clang>,$<CXX_COMPILER_ID:AppleClang>>:
594
+ -Wall
595
+ -Wextra
596
+ >
597
+ >
598
+ $<$<CXX_COMPILER_ID:MSVC>:
599
+ /W4
600
+ >
601
+ $<$<COMPILE_LANGUAGE:CUDA>:-Xcompiler=-Wall
602
+ -Xcompiler=-Wextra
603
+ >
604
+ )
605
+
606
+ include(EnableCXXWarningIfSupport)
607
+ # Note we explicitly turn off -Wcast-function-type as PETSc *requires*
608
+ # we cast a function to the wrong type in MatFDColoringSetFunction
609
+ target_enable_cxx_warning_if_supported(
610
+ bout++ FLAGS -Wnull-dereference -Wno-cast-function-type
611
+ )
612
+ endif()
613
+
614
+ # Compile time features
615
+
616
+ set(CHECK_LEVELS 0 1 2 3 4)
617
+ set(CHECK
618
+ 2
619
+ CACHE STRING "Set run-time checking level"
620
+ )
621
+ set_property(CACHE CHECK PROPERTY STRINGS ${CHECK_LEVELS})
622
+ if(NOT CHECK IN_LIST CHECK_LEVELS)
623
+ message(FATAL_ERROR "CHECK must be one of ${CHECK_LEVELS}")
624
+ endif()
625
+ message(STATUS "Runtime checking level: CHECK=${CHECK}")
626
+ target_compile_definitions(bout++ PUBLIC "CHECK=${CHECK}")
627
+ set(BOUT_CHECK_LEVEL ${CHECK})
628
+
629
+ if(CHECK GREATER 1)
630
+ set(bout_use_msgstack_default ON)
631
+ else()
632
+ set(bout_use_msgstack_default OFF)
633
+ endif()
634
+ set(BOUT_ENABLE_MSGSTACK
635
+ ${bout_use_msgstack_default}
636
+ CACHE BOOL "Enable debug message stack"
637
+ )
638
+ message(STATUS "Message stack: BOUT_USE_MSGSTACK=${BOUT_ENABLE_MSGSTACK}")
639
+ set(BOUT_USE_MSGSTACK ${BOUT_ENABLE_MSGSTACK})
640
+
641
+ cmake_dependent_option(
642
+ BOUT_ENABLE_OUTPUT_DEBUG "Enable extra debug output" OFF "CHECK LESS 3" ON
643
+ )
644
+ message(
645
+ STATUS "Extra debug output: BOUT_USE_OUTPUT_DEBUG=${BOUT_ENABLE_OUTPUT_DEBUG}"
646
+ )
647
+ set(BOUT_USE_OUTPUT_DEBUG ${BOUT_ENABLE_OUTPUT_DEBUG})
648
+
649
+ option(BOUT_ENABLE_SIGNAL "SegFault handling" ON)
650
+ message(STATUS "Signal handling: BOUT_USE_SIGNAL=${BOUT_ENABLE_SIGNAL}")
651
+ set(BOUT_USE_SIGNAL ${BOUT_ENABLE_SIGNAL})
652
+
653
+ option(BOUT_ENABLE_COLOR "Output coloring" ON)
654
+ message(STATUS "Output coloring: BOUT_USE_COLOR=${BOUT_ENABLE_COLOR}")
655
+ set(BOUT_USE_COLOR ${BOUT_ENABLE_COLOR})
656
+
657
+ option(BOUT_ENABLE_TRACK "Field name tracking" ON)
658
+ message(STATUS "Field name tracking: BOUT_USE_TRACK=${BOUT_ENABLE_TRACK}")
659
+ set(BOUT_USE_TRACK ${BOUT_ENABLE_TRACK})
660
+
661
+ option(BOUT_ENABLE_SIGFPE "Signalling floating point exceptions" OFF)
662
+ message(
663
+ STATUS
664
+ "Signalling floating point exceptions: BOUT_USE_SIGFPE=${BOUT_ENABLE_SIGFPE}"
665
+ )
666
+ set(BOUT_USE_SIGFPE ${BOUT_ENABLE_SIGFPE})
667
+
668
+ option(BOUT_ENABLE_METRIC_3D "Enable 3D metric support" OFF)
669
+ if(BOUT_ENABLE_METRIC_3D)
670
+ set(BOUT_METRIC_TYPE "3D")
671
+ else()
672
+ set(BOUT_METRIC_TYPE "2D")
673
+ endif()
674
+ set(BOUT_USE_METRIC_3D ${BOUT_ENABLE_METRIC_3D})
675
+
676
+ include(CheckCXXSourceCompiles)
677
+ check_cxx_source_compiles(
678
+ "int main() { const char* name = __PRETTY_FUNCTION__; }" HAS_PRETTY_FUNCTION
679
+ )
680
+ set(BOUT_HAS_PRETTY_FUNCTION ${HAS_PRETTY_FUNCTION})
681
+
682
+ # Locations of the various Python modules, including the generated boutconfig module
683
+ set(BOUT_PYTHONPATH
684
+ "${CMAKE_CURRENT_BINARY_DIR}/tools/pylib:${CMAKE_CURRENT_SOURCE_DIR}/tools/pylib"
685
+ )
686
+ # Variables for boutconfig module -- note that these will contain
687
+ # generator expressions and CMake targets, and not generally be very
688
+ # useful
689
+ get_target_property(BOUT_LIBS bout++ INTERFACE_LINK_LIBRARIES)
690
+ get_target_property(BOUT_CFLAGS bout++ INTERFACE_INCLUDE_DIRECTORIES)
691
+
692
+ # We want to compile the actual flags used into the library so we can
693
+ # see them at runtime. This needs a few steps:
694
+
695
+ # 1. Get the macro definitions. They come as a ;-separated list and
696
+ # without the -D. We also need to also stick a -D on the front of
697
+ # the first item
698
+ get_property(
699
+ BOUT_COMPILE_DEFINITIONS
700
+ TARGET bout++
701
+ PROPERTY COMPILE_DEFINITIONS
702
+ )
703
+ string(REPLACE ";" " -D" BOUT_COMPILE_DEFINITIONS "${BOUT_COMPILE_DEFINITIONS}")
704
+ string(CONCAT BOUT_COMPILE_DEFINITIONS " -D" "${BOUT_COMPILE_DEFINITIONS}")
705
+
706
+ # 2. Get the compiler options. Again, they come as a ;-separated
707
+ # list. Note that they don't include optimisation or debug flags:
708
+ # they're in the CMAKE_CXX_FLAGS* variables
709
+ get_property(
710
+ BOUT_COMPILE_OPTIONS
711
+ TARGET bout++
712
+ PROPERTY COMPILE_OPTIONS
713
+ )
714
+ string(REPLACE ";" " " BOUT_COMPILE_OPTIONS "${BOUT_COMPILE_OPTIONS}")
715
+
716
+ # 3. The optimisation and/or debug flags are in the CMAKE_CXX_FLAGS*
717
+ # variables. We need both the common flags as well as those for the
718
+ # build type actually being used. Note: this might behave weirdly
719
+ # on Windows. Might need to expand CMAKE_CONFIGURATION_TYPES
720
+ # instead?
721
+
722
+ include(BuildType)
723
+ # Here CMAKE_BUILD_TYPE is always set
724
+ string(TOUPPER "${CMAKE_BUILD_TYPE}" CMAKE_BUILD_TYPE_UPPER)
725
+ string(CONCAT BOUT_COMPILE_BUILD_FLAGS " " "${CMAKE_CXX_FLAGS}"
726
+ "${CMAKE_CXX_FLAGS_${CMAKE_BUILD_TYPE_UPPER}}"
727
+ )
728
+
729
+ # 4. Now we join all the flags from the first three steps together
730
+ string(CONCAT BOUT_FLAGS_STRING "${BOUT_COMPILE_OPTIONS}"
731
+ "${BOUT_COMPILE_DEFINITIONS}" "${BOUT_COMPILE_BUILD_FLAGS}"
732
+ )
733
+
734
+ # 5. Finally actually add the flags as a define
735
+ target_compile_definitions(
736
+ bout++ PRIVATE BOUT_FLAGS_STRING=${BOUT_FLAGS_STRING}
737
+ )
738
+
739
+ ##################################################
740
+ # Tests
741
+
742
+ # Are we building BOUT++ directly, or as part of another project
743
+ string(COMPARE EQUAL "${PROJECT_NAME}" "${CMAKE_PROJECT_NAME}"
744
+ PROJECT_IS_TOP_LEVEL
745
+ )
746
+ option(BOUT_TESTS "Build the tests" ${PROJECT_IS_TOP_LEVEL})
747
+ option(
748
+ BOUT_ENABLE_ALL_TESTS
749
+ "Enable running all of the tests, rather then the standard selection of fast tests"
750
+ OFF
751
+ )
752
+ if(BOUT_TESTS)
753
+ enable_testing()
754
+ # Targets for just building the tests
755
+ # Tests need to add themselves as dependencies to these targets
756
+ add_custom_target(build-check-unit-tests)
757
+ add_custom_target(build-check-integrated-tests)
758
+ add_custom_target(build-check-mms-tests)
759
+
760
+ # Build all the tests
761
+ add_custom_target(build-check)
762
+ add_dependencies(
763
+ build-check build-check-unit-tests build-check-integrated-tests
764
+ build-check-mms-tests
765
+ )
766
+
767
+ add_subdirectory(tests/unit EXCLUDE_FROM_ALL)
768
+ add_subdirectory(tests/integrated EXCLUDE_FROM_ALL)
769
+ add_subdirectory(tests/MMS EXCLUDE_FROM_ALL)
770
+
771
+ # Targets for running the tests
772
+ if(BOUT_ENABLE_UNIT_TESTS)
773
+ add_custom_target(
774
+ check-unit-tests COMMAND ctest -R serial_tests --output-on-failure
775
+ )
776
+ add_dependencies(check-unit-tests build-check-unit-tests)
777
+ endif()
778
+
779
+ add_custom_target(
780
+ check-integrated-tests COMMAND ctest -R "test-" --output-on-failure
781
+ )
782
+ add_dependencies(check-integrated-tests build-check-integrated-tests)
783
+
784
+ add_custom_target(check-mms-tests COMMAND ctest -R "MMS-" --output-on-failure)
785
+ add_dependencies(check-mms-tests build-check-mms-tests)
786
+
787
+ # Run all the tests
788
+ add_custom_target(check)
789
+ add_dependencies(check check-integrated-tests check-mms-tests)
790
+ if(BOUT_ENABLE_UNIT_TESTS)
791
+ add_dependencies(check check-unit-tests)
792
+ endif()
793
+
794
+ endif()
795
+
796
+ option(BOUT_BUILD_EXAMPLES "Build the examples" ON)
797
+ if(BOUT_BUILD_EXAMPLES)
798
+ add_custom_target(build-all-examples)
799
+ add_subdirectory(examples EXCLUDE_FROM_ALL)
800
+ endif()
801
+
802
+ ##################################################
803
+ # L10N: localisation - include translations
804
+
805
+ find_package(Gettext)
806
+
807
+ if(GETTEXT_FOUND)
808
+ #add_custom_target(mofiles ALL)
809
+ set(bout_langs es de fr zh_CN zh_TW)
810
+
811
+ foreach(_lang IN LISTS bout_langs)
812
+ set(_gmoFile ${CMAKE_CURRENT_BINARY_DIR}/locale/${_lang}/libbout.gmo)
813
+ set(_poFile ${CMAKE_CURRENT_SOURCE_DIR}/locale/${_lang}/libbout.po)
814
+ add_custom_command(
815
+ OUTPUT ${_gmoFile} _mo_file_${_lang}
816
+ COMMAND ${CMAKE_COMMAND} -E make_directory
817
+ ${CMAKE_CURRENT_BINARY_DIR}/locale/${_lang}/
818
+ COMMAND ${GETTEXT_MSGFMT_EXECUTABLE} -o ${_gmoFile} ${_poFile}
819
+ WORKING_DIRECTORY "${CMAKE_CURRENT_SOURCE_DIR}"
820
+ DEPENDS ${_poFile}
821
+ )
822
+
823
+ list(APPEND _gmoFiles ${_gmoFile})
824
+
825
+ install(
826
+ FILES ${_gmoFile}
827
+ DESTINATION ${CMAKE_INSTALL_LOCALEDIR}/${_lang}/LC_MESSAGES/
828
+ RENAME libbout.mo
829
+ )
830
+ endforeach()
831
+ add_custom_target(mofiles ALL DEPENDS ${_gmoFiles})
832
+ endif()
833
+
834
+ ##################################################
835
+ # Documentation
836
+
837
+ option(BOUT_BUILD_DOCS "Build the documentation" OFF)
838
+ if(BOUT_BUILD_DOCS)
839
+ add_subdirectory(manual)
840
+ endif()
841
+
842
+ add_custom_target(
843
+ dist
844
+ COMMAND ${Python3_EXECUTABLE}
845
+ ${CMAKE_SOURCE_DIR}/tools/pylib/_boutpp_build/backend.py dist
846
+ # there is no cmake equivalent to `mv` - so only works on systems that are not inentionally non-POSIX complient
847
+ COMMAND mv BOUT++-v${BOUT_FULL_VERSION}.tar.gz ${CMAKE_CURRENT_BINARY_DIR}/
848
+ WORKING_DIRECTORY ${CMAKE_CURRENT_SOURCE_DIR}
849
+ )
850
+ ##################################################
851
+ # Generate the build config header
852
+
853
+ if(EXISTS "${CMAKE_CURRENT_SOURCE_DIR}/include/bout/build_defines.hxx")
854
+ # If we do in source builds, this is fine
855
+ if(NOT ${CMAKE_CURRENT_SOURCE_DIR} STREQUAL ${CMAKE_CURRENT_BINARY_DIR})
856
+ message(
857
+ FATAL_ERROR
858
+ "Generated build_defines.hxx header already exists; please remove '${CMAKE_CURRENT_SOURCE_DIR}/include/bout/build_defines.hxx' before continuing"
859
+ )
860
+ endif()
861
+ endif()
862
+
863
+ configure_file(cmake_build_defines.hxx.in include/bout/build_defines.hxx)
864
+
865
+ ##################################################
866
+ # Generate the bout-config script
867
+
868
+ # Set some variables to match autotools so we can use the same input file
869
+ set(CXX "${MPI_CXX_COMPILER}")
870
+ set(PYTHONCONFIGPATH "${BOUT_PYTHONPATH}")
871
+ set(BOUT_HAS_LEGACY_NETCDF OFF)
872
+ set(BOUT_HAS_PNETCDF OFF)
873
+
874
+ # For shared libraries we only need to know how to link against BOUT++,
875
+ # while for static builds we need the dependencies too
876
+ if(BUILD_SHARED_LIBS)
877
+ # Include rpath linker flag so user doesn't need to set LD_LIBRARY_PATH
878
+ set(CONFIG_LDFLAGS
879
+ "${CMAKE_SHARED_LIBRARY_RUNTIME_CXX_FLAG}\$BOUT_LIB_PATH -L\$BOUT_LIB_PATH -lbout++ -lfmt ${CONFIG_LDFLAGS_SHARED}"
880
+ )
881
+ else()
882
+ set(CONFIG_LDFLAGS "${CONFIG_LDFLAGS}")
883
+ endif()
884
+
885
+ set(ISINSTALLED "FALSE")
886
+
887
+ set(_CONFIG_LDFLAGS)
888
+ string(REPLACE " " ";" CONFIG_LDFLAGS_LIST ${CONFIG_LDFLAGS})
889
+ foreach(flag ${CONFIG_LDFLAGS_LIST})
890
+ string(REGEX MATCH "^-.*$" isopt "${flag}")
891
+ if(isopt)
892
+ # message("${flag} is an option")
893
+ set(_CONFIG_LDFLAGS "${_CONFIG_LDFLAGS} ${flag}")
894
+ # All good
895
+ else()
896
+ if(EXISTS ${flag})
897
+ # message("${flag} is a file")
898
+ set(_CONFIG_LDFLAGS "${_CONFIG_LDFLAGS} ${flag}")
899
+ else()
900
+ string(FIND "${flag}" "::" hascolcol)
901
+ if(${hascolcol} EQUAL -1)
902
+ message("Fixing ${flag} to -l${flag}")
903
+ set(_CONFIG_LDFLAGS "${_CONFIG_LDFLAGS} -l${flag}")
904
+ else()
905
+ string(REGEX MATCH "[^:]*$" flag2 "${flag}")
906
+ message("Fixing ${flag} to -l${flag2}")
907
+ set(_CONFIG_LDFLAGS "${_CONFIG_LDFLAGS} -l${flag2}")
908
+ endif()
909
+ endif()
910
+ endif()
911
+ endforeach()
912
+ set(CONFIG_LDFLAGS ${_CONFIG_LDFLAGS})
913
+
914
+ # This version of the file allows the build directory to be used directly
915
+ configure_file(bin/bout-config.in bin/bout-config @ONLY)
916
+ configure_file(
917
+ tools/pylib/boutconfig/__init__.py.cin tools/pylib/boutconfig/__init__.py
918
+ @ONLY
919
+ )
920
+ configure_file(bout++Config.cmake.in bout++Config.cmake @ONLY)
921
+
922
+ # We need to generate a separate version for installation, with the
923
+ # correct install paths. So first we need to replace the build
924
+ # directory library path with the installation path
925
+ string(REPLACE "${CMAKE_BINARY_DIR}/lib"
926
+ "${CMAKE_INSTALL_PREFIX}/${CMAKE_INSTALL_LIBDIR}" CONFIG_LDFLAGS
927
+ "${CONFIG_LDFLAGS}"
928
+ )
929
+ set(BOUT_LIB_PATH "${CMAKE_INSTALL_PREFIX}/${CMAKE_INSTALL_LIBDIR}")
930
+ # Update mpark.variant and fmt include paths if we're building them
931
+ if(NOT BOUT_USE_SYSTEM_MPARK_VARIANT)
932
+ set(MPARK_VARIANT_INCLUDE_PATH
933
+ "${CMAKE_INSTALL_PREFIX}/${CMAKE_INSTALL_INCLUDEDIR}"
934
+ )
935
+ endif()
936
+ if(NOT BOUT_USE_SYSTEM_FMT)
937
+ set(FMT_INCLUDE_PATH "${CMAKE_INSTALL_PREFIX}/${CMAKE_INSTALL_INCLUDEDIR}")
938
+ endif()
939
+ if(NOT BOUT_USE_SYSTEM_CPPTRACE)
940
+ set(CPPTRACE_INCLUDE_PATH
941
+ "${CMAKE_INSTALL_PREFIX}/${CMAKE_INSTALL_INCLUDEDIR}"
942
+ )
943
+ endif()
944
+ set(BOUT_INCLUDE_PATH "${CMAKE_INSTALL_PREFIX}/${CMAKE_INSTALL_INCLUDEDIR}")
945
+ # We don't need the build include path any more
946
+ string(REPLACE "-I${CMAKE_CURRENT_BINARY_DIR}/include" "" CONFIG_CFLAGS
947
+ "${CONFIG_CFLAGS}"
948
+ )
949
+
950
+ set(PYTHONCONFIGPATH "${CMAKE_INSTALL_PREFIX}/${CMAKE_INSTALL_PYTHON_SITEARCH}")
951
+ set(ISINSTALLED "TRUE")
952
+
953
+ # This version now has the correct paths to use the final installation
954
+ configure_file(bin/bout-config.in bin/bout-config-install @ONLY)
955
+ configure_file(
956
+ tools/pylib/boutconfig/__init__.py.cin
957
+ tools/pylib/boutconfig/__init__.py-install @ONLY
958
+ )
959
+ configure_file(bout++Config.cmake.in bout++Config.cmake-install @ONLY)
960
+
961
+ ##################################################
962
+ # Installation
963
+
964
+ install(
965
+ TARGETS bout++
966
+ EXPORT bout++Targets
967
+ LIBRARY DESTINATION "${CMAKE_INSTALL_LIBDIR}"
968
+ ARCHIVE DESTINATION "${CMAKE_INSTALL_LIBDIR}"
969
+ RUNTIME DESTINATION "${CMAKE_INSTALL_BINDIR}"
970
+ INCLUDES
971
+ DESTINATION "${CMAKE_INSTALL_INCLUDEDIR}"
972
+ )
973
+ # Repo files
974
+ install(
975
+ DIRECTORY include/
976
+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}
977
+ FILES_MATCHING
978
+ PATTERN "*.hxx"
979
+ )
980
+ # Generated headers
981
+ install(DIRECTORY "${PROJECT_BINARY_DIR}/include/"
982
+ DESTINATION ${CMAKE_INSTALL_INCLUDEDIR}
983
+ )
984
+
985
+ # The various helper scripts
986
+ install(
987
+ DIRECTORY "${CMAKE_CURRENT_SOURCE_DIR}/bin/" USE_SOURCE_PERMISSIONS
988
+ DESTINATION "${CMAKE_INSTALL_BINDIR}"
989
+ REGEX "bout-squashoutput" EXCLUDE
990
+ REGEX "bout-config\.in" EXCLUDE
991
+ REGEX "bout-pylib-cmd-to-bin" EXCLUDE
992
+ )
993
+
994
+ # The installed version of bout-config needs renaming when we install
995
+ # it. Note this MUST be done after the installation of bin/, to make
996
+ # sure we clobber any versions of bout-config hanging around from an
997
+ # autotools build
998
+ install(
999
+ PROGRAMS "${CMAKE_CURRENT_BINARY_DIR}/bin/bout-config-install"
1000
+ DESTINATION "${CMAKE_INSTALL_BINDIR}"
1001
+ RENAME "bout-config"
1002
+ )
1003
+
1004
+ install(
1005
+ FILES "${CMAKE_CURRENT_BINARY_DIR}/tools/pylib/boutconfig/__init__.py-install"
1006
+ DESTINATION "${CMAKE_INSTALL_PYTHON_SITEARCH}/boutconfig"
1007
+ RENAME "__init__.py"
1008
+ )
1009
+
1010
+ include(CMakePackageConfigHelpers)
1011
+ write_basic_package_version_file(
1012
+ bout++ConfigVersion.cmake
1013
+ VERSION ${PACKAGE_VERSION}
1014
+ COMPATIBILITY SameMajorVersion
1015
+ )
1016
+
1017
+ install(
1018
+ EXPORT bout++Targets
1019
+ FILE bout++Targets.cmake
1020
+ NAMESPACE bout++::
1021
+ DESTINATION "${CMAKE_INSTALL_LIBDIR}/cmake/bout++"
1022
+ )
1023
+
1024
+ # CMake configuration files
1025
+ install(
1026
+ FILES "${CMAKE_CURRENT_BINARY_DIR}/bout++ConfigVersion.cmake"
1027
+ "${CMAKE_CURRENT_SOURCE_DIR}/cmake/BOUT++functions.cmake"
1028
+ "${CMAKE_CURRENT_SOURCE_DIR}/cmake/CorrectWindowsPaths.cmake"
1029
+ "${CMAKE_CURRENT_SOURCE_DIR}/cmake/FindClangFormat.cmake"
1030
+ "${CMAKE_CURRENT_SOURCE_DIR}/cmake/FindFFTW.cmake"
1031
+ "${CMAKE_CURRENT_SOURCE_DIR}/cmake/FindHYPRE.cmake"
1032
+ "${CMAKE_CURRENT_SOURCE_DIR}/cmake/FindnetCDF.cmake"
1033
+ "${CMAKE_CURRENT_SOURCE_DIR}/cmake/FindnetCDFCxx.cmake"
1034
+ "${CMAKE_CURRENT_SOURCE_DIR}/cmake/FindPackageMultipass.cmake"
1035
+ "${CMAKE_CURRENT_SOURCE_DIR}/cmake/FindLibuuid.cmake"
1036
+ "${CMAKE_CURRENT_SOURCE_DIR}/cmake/FindPETSc.cmake"
1037
+ "${CMAKE_CURRENT_SOURCE_DIR}/cmake/FindScoreP.cmake"
1038
+ "${CMAKE_CURRENT_SOURCE_DIR}/cmake/FindSLEPc.cmake"
1039
+ "${CMAKE_CURRENT_SOURCE_DIR}/cmake/FindSUNDIALS.cmake"
1040
+ "${CMAKE_CURRENT_SOURCE_DIR}/cmake/FindSphinx.cmake"
1041
+ "${CMAKE_CURRENT_SOURCE_DIR}/cmake/ResolveCompilerPaths.cmake"
1042
+ DESTINATION "${CMAKE_INSTALL_LIBDIR}/cmake/bout++"
1043
+ )
1044
+ install(
1045
+ FILES "${CMAKE_CURRENT_BINARY_DIR}/bout++Config.cmake-install"
1046
+ DESTINATION "${CMAKE_INSTALL_LIBDIR}/cmake/bout++"
1047
+ RENAME "bout++Config.cmake"
1048
+ )
1049
+
1050
+ export(
1051
+ EXPORT bout++Targets
1052
+ FILE "${CMAKE_CURRENT_BINARY_DIR}/bout++Targets.cmake"
1053
+ NAMESPACE bout++::
1054
+ )
1055
+
1056
+ export(PACKAGE bout)
1057
+
1058
+ ##################################################
1059
+ # Configure summary
1060
+
1061
+ message(
1062
+ "
1063
+ --------------------------------
1064
+ BOUT++ Configuration Summary
1065
+ --------------------------------
1066
+
1067
+ Bundled PVODE support : ${BOUT_HAS_PVODE}
1068
+ PETSc support : ${BOUT_HAS_PETSC}
1069
+ SLEPc support : ${BOUT_HAS_SLEPC}
1070
+ SUNDIALS support : ${BOUT_HAS_SUNDIALS}
1071
+ HYPRE support : ${BOUT_HAS_HYPRE}
1072
+ NetCDF support : ${BOUT_HAS_NETCDF}
1073
+ ADIOS2 support : ${BOUT_HAS_ADIOS2}
1074
+ FFTW support : ${BOUT_HAS_FFTW}
1075
+ LAPACK support : ${BOUT_HAS_LAPACK}
1076
+ OpenMP support : ${BOUT_USE_OPENMP}
1077
+ Natural language support : ${BOUT_HAS_GETTEXT}
1078
+ ScoreP support : ${BOUT_HAS_SCOREP}
1079
+ System UUID generator : ${BOUT_HAS_UUID_SYSTEM_GENERATOR}
1080
+ Extra debug output : ${BOUT_USE_OUTPUT_DEBUG}
1081
+ Runtime error check level: ${BOUT_CHECK_LEVEL}
1082
+ Signal handling : ${BOUT_USE_SIGNAL}
1083
+ Output coloring : ${BOUT_USE_COLOR}
1084
+ Field name tracking : ${BOUT_USE_TRACK}
1085
+ Floating point exceptions: ${BOUT_USE_SIGFPE}
1086
+ RAJA enabled : ${BOUT_HAS_RAJA}
1087
+ Umpire enabled : ${BOUT_HAS_UMPIRE}
1088
+ Caliper enabled : ${BOUT_HAS_CALIPER}
1089
+ CUDA enabled : ${BOUT_HAS_CUDA}
1090
+ Metric type : ${BOUT_METRIC_TYPE}
1091
+ Python API support : ${BOUT_USE_PYTHON}
1092
+ Sanitizers enabled : ${BOUT_USE_SANITIZERS}
1093
+
1094
+ === Python ===
1095
+
1096
+ Make sure that the tools/pylib directory is in your PYTHONPATH
1097
+ e.g. by adding to your ~/.bashrc file
1098
+
1099
+ export PYTHONPATH=${BOUT_PYTHONPATH}:\$PYTHONPATH
1100
+
1101
+ *** Now run `cmake --build ${CMAKE_BINARY_DIR}` to compile BOUT++ ***
1102
+ "
1103
+ )