botorch-rust 0.1.0__tar.gz

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  1. botorch_rust-0.1.0/Cargo.lock +781 -0
  2. botorch_rust-0.1.0/Cargo.toml +40 -0
  3. botorch_rust-0.1.0/PKG-INFO +66 -0
  4. botorch_rust-0.1.0/README.md +40 -0
  5. botorch_rust-0.1.0/botorch_core/Cargo.toml +28 -0
  6. botorch_rust-0.1.0/botorch_core/README.md +1482 -0
  7. botorch_rust-0.1.0/botorch_core/examples/benchmark_mo_utils.rs +162 -0
  8. botorch_rust-0.1.0/botorch_core/examples/benchmark_optimize_acqf.rs +120 -0
  9. botorch_rust-0.1.0/botorch_core/examples/bo_loop.rs +152 -0
  10. botorch_rust-0.1.0/botorch_core/examples/mobo_loop.rs +244 -0
  11. botorch_rust-0.1.0/botorch_core/src/acquisition/analytic.rs +1118 -0
  12. botorch_rust-0.1.0/botorch_core/src/acquisition/composite.rs +295 -0
  13. botorch_rust-0.1.0/botorch_core/src/acquisition/cost_aware.rs +352 -0
  14. botorch_rust-0.1.0/botorch_core/src/acquisition/fidelity.rs +256 -0
  15. botorch_rust-0.1.0/botorch_core/src/acquisition/logei.rs +948 -0
  16. botorch_rust-0.1.0/botorch_core/src/acquisition/mc_objective.rs +669 -0
  17. botorch_rust-0.1.0/botorch_core/src/acquisition/mod.rs +237 -0
  18. botorch_rust-0.1.0/botorch_core/src/acquisition/monte_carlo.rs +985 -0
  19. botorch_rust-0.1.0/botorch_core/src/acquisition/multi_objective/analytic.rs +255 -0
  20. botorch_rust-0.1.0/botorch_core/src/acquisition/multi_objective/entropy_linalg.rs +207 -0
  21. botorch_rust-0.1.0/botorch_core/src/acquisition/multi_objective/hypervolume.rs +1040 -0
  22. botorch_rust-0.1.0/botorch_core/src/acquisition/multi_objective/hypervolume_knowledge_gradient.rs +1071 -0
  23. botorch_rust-0.1.0/botorch_core/src/acquisition/multi_objective/joint_entropy_search.rs +1931 -0
  24. botorch_rust-0.1.0/botorch_core/src/acquisition/multi_objective/logei.rs +285 -0
  25. botorch_rust-0.1.0/botorch_core/src/acquisition/multi_objective/max_value_entropy_search.rs +141 -0
  26. botorch_rust-0.1.0/botorch_core/src/acquisition/multi_objective/mod.rs +287 -0
  27. botorch_rust-0.1.0/botorch_core/src/acquisition/multi_objective/monte_carlo.rs +375 -0
  28. botorch_rust-0.1.0/botorch_core/src/acquisition/multi_objective/multi_fidelity.rs +286 -0
  29. botorch_rust-0.1.0/botorch_core/src/acquisition/multi_objective/multi_output_risk_measures.rs +1340 -0
  30. botorch_rust-0.1.0/botorch_core/src/acquisition/multi_objective/nehvi.rs +855 -0
  31. botorch_rust-0.1.0/botorch_core/src/acquisition/multi_objective/objective.rs +804 -0
  32. botorch_rust-0.1.0/botorch_core/src/acquisition/multi_objective/parego.rs +299 -0
  33. botorch_rust-0.1.0/botorch_core/src/acquisition/multi_objective/pareto_samples.rs +673 -0
  34. botorch_rust-0.1.0/botorch_core/src/acquisition/multi_objective/predictive_entropy_search.rs +1358 -0
  35. botorch_rust-0.1.0/botorch_core/src/acquisition/multi_objective/utils.rs +299 -0
  36. botorch_rust-0.1.0/botorch_core/src/acquisition/multioutput_acquisition.rs +168 -0
  37. botorch_rust-0.1.0/botorch_core/src/acquisition/objective.rs +412 -0
  38. botorch_rust-0.1.0/botorch_core/src/acquisition/one_shot.rs +50 -0
  39. botorch_rust-0.1.0/botorch_core/src/acquisition/risk_measures.rs +537 -0
  40. botorch_rust-0.1.0/botorch_core/src/acquisition/utils.rs +457 -0
  41. botorch_rust-0.1.0/botorch_core/src/constraints.rs +601 -0
  42. botorch_rust-0.1.0/botorch_core/src/error.rs +61 -0
  43. botorch_rust-0.1.0/botorch_core/src/fit.rs +450 -0
  44. botorch_rust-0.1.0/botorch_core/src/kernels.rs +673 -0
  45. botorch_rust-0.1.0/botorch_core/src/lbfgsb.rs +2276 -0
  46. botorch_rust-0.1.0/botorch_core/src/lib.rs +370 -0
  47. botorch_rust-0.1.0/botorch_core/src/linalg.rs +537 -0
  48. botorch_rust-0.1.0/botorch_core/src/mll.rs +183 -0
  49. botorch_rust-0.1.0/botorch_core/src/models/batched.rs +1059 -0
  50. botorch_rust-0.1.0/botorch_core/src/models/contextual_multioutput.rs +2053 -0
  51. botorch_rust-0.1.0/botorch_core/src/models/cost.rs +265 -0
  52. botorch_rust-0.1.0/botorch_core/src/models/deterministic.rs +189 -0
  53. botorch_rust-0.1.0/botorch_core/src/models/fantasize.rs +689 -0
  54. botorch_rust-0.1.0/botorch_core/src/models/gp/conditioning.rs +824 -0
  55. botorch_rust-0.1.0/botorch_core/src/models/gp.rs +1446 -0
  56. botorch_rust-0.1.0/botorch_core/src/models/mod.rs +45 -0
  57. botorch_rust-0.1.0/botorch_core/src/models/model.rs +315 -0
  58. botorch_rust-0.1.0/botorch_core/src/models/model_list.rs +407 -0
  59. botorch_rust-0.1.0/botorch_core/src/models/model_list_dyn.rs +205 -0
  60. botorch_rust-0.1.0/botorch_core/src/models/multitask.rs +311 -0
  61. botorch_rust-0.1.0/botorch_core/src/optim/initializers.rs +580 -0
  62. botorch_rust-0.1.0/botorch_core/src/optim/mod.rs +35 -0
  63. botorch_rust-0.1.0/botorch_core/src/optim/one_shot.rs +513 -0
  64. botorch_rust-0.1.0/botorch_core/src/optim/optimize.rs +910 -0
  65. botorch_rust-0.1.0/botorch_core/src/optim/optimize_list.rs +242 -0
  66. botorch_rust-0.1.0/botorch_core/src/optim/parameter_constraints.rs +579 -0
  67. botorch_rust-0.1.0/botorch_core/src/optim/slsqp.rs +532 -0
  68. botorch_rust-0.1.0/botorch_core/src/posterior.rs +339 -0
  69. botorch_rust-0.1.0/botorch_core/src/priors.rs +294 -0
  70. botorch_rust-0.1.0/botorch_core/src/sampling/pathwise/features.rs +326 -0
  71. botorch_rust-0.1.0/botorch_core/src/sampling/pathwise/mod.rs +96 -0
  72. botorch_rust-0.1.0/botorch_core/src/sampling/pathwise/paths.rs +630 -0
  73. botorch_rust-0.1.0/botorch_core/src/sampling/pathwise/posterior_samplers.rs +555 -0
  74. botorch_rust-0.1.0/botorch_core/src/sampling/pathwise/prior_samplers.rs +95 -0
  75. botorch_rust-0.1.0/botorch_core/src/sampling/pathwise/update_strategies.rs +93 -0
  76. botorch_rust-0.1.0/botorch_core/src/sampling/pathwise/utils.rs +253 -0
  77. botorch_rust-0.1.0/botorch_core/src/sampling.rs +167 -0
  78. botorch_rust-0.1.0/botorch_core/src/test_functions/mod.rs +21 -0
  79. botorch_rust-0.1.0/botorch_core/src/test_functions/multi_objective/branin_currin.rs +28 -0
  80. botorch_rust-0.1.0/botorch_core/src/test_functions/multi_objective/constrained.rs +102 -0
  81. botorch_rust-0.1.0/botorch_core/src/test_functions/multi_objective/dh.rs +57 -0
  82. botorch_rust-0.1.0/botorch_core/src/test_functions/multi_objective/dtlz.rs +278 -0
  83. botorch_rust-0.1.0/botorch_core/src/test_functions/multi_objective/engineering.rs +126 -0
  84. botorch_rust-0.1.0/botorch_core/src/test_functions/multi_objective/gmm.rs +54 -0
  85. botorch_rust-0.1.0/botorch_core/src/test_functions/multi_objective/mod.rs +1305 -0
  86. botorch_rust-0.1.0/botorch_core/src/test_functions/multi_objective/multi_fidelity.rs +48 -0
  87. botorch_rust-0.1.0/botorch_core/src/test_functions/multi_objective/pareto.rs +230 -0
  88. botorch_rust-0.1.0/botorch_core/src/test_functions/multi_objective/penicillin.rs +110 -0
  89. botorch_rust-0.1.0/botorch_core/src/test_functions/multi_objective/toy_robust.rs +24 -0
  90. botorch_rust-0.1.0/botorch_core/src/test_functions/multi_objective/zdt.rs +35 -0
  91. botorch_rust-0.1.0/botorch_core/src/test_functions/synthetic.rs +961 -0
  92. botorch_rust-0.1.0/botorch_core/src/transforms/input.rs +1022 -0
  93. botorch_rust-0.1.0/botorch_core/src/transforms.rs +489 -0
  94. botorch_rust-0.1.0/botorch_core/src/utils/mod.rs +12 -0
  95. botorch_rust-0.1.0/botorch_core/src/utils/multi_objective/box_decompositions/box_decomposition.rs +885 -0
  96. botorch_rust-0.1.0/botorch_core/src/utils/multi_objective/box_decompositions/box_decomposition_list.rs +184 -0
  97. botorch_rust-0.1.0/botorch_core/src/utils/multi_objective/box_decompositions/dominated.rs +24 -0
  98. botorch_rust-0.1.0/botorch_core/src/utils/multi_objective/box_decompositions/mod.rs +55 -0
  99. botorch_rust-0.1.0/botorch_core/src/utils/multi_objective/box_decompositions/non_dominated.rs +403 -0
  100. botorch_rust-0.1.0/botorch_core/src/utils/multi_objective/box_decompositions/utils.rs +563 -0
  101. botorch_rust-0.1.0/botorch_core/src/utils/multi_objective/hypervolume.rs +648 -0
  102. botorch_rust-0.1.0/botorch_core/src/utils/multi_objective/mod.rs +281 -0
  103. botorch_rust-0.1.0/botorch_core/src/utils/multi_objective/optimize.rs +1408 -0
  104. botorch_rust-0.1.0/botorch_core/src/utils/multi_objective/pareto.rs +236 -0
  105. botorch_rust-0.1.0/botorch_core/src/utils/multi_objective/scalarization.rs +257 -0
  106. botorch_rust-0.1.0/botorch_core/src/utils/objective.rs +466 -0
  107. botorch_rust-0.1.0/botorch_core/src/utils/polytope.rs +565 -0
  108. botorch_rust-0.1.0/botorch_core/src/utils/probability.rs +324 -0
  109. botorch_rust-0.1.0/botorch_core/src/utils/safe_math.rs +530 -0
  110. botorch_rust-0.1.0/botorch_core/src/utils/sampling.rs +383 -0
  111. botorch_rust-0.1.0/botorch_core/tests/acquisition_gradients.rs +253 -0
  112. botorch_rust-0.1.0/botorch_core/tests/acquisition_parity.rs +450 -0
  113. botorch_rust-0.1.0/botorch_core/tests/common/mod.rs +305 -0
  114. botorch_rust-0.1.0/botorch_core/tests/constrained_optimize_parity.rs +477 -0
  115. botorch_rust-0.1.0/botorch_core/tests/deterministic_parity.rs +522 -0
  116. botorch_rust-0.1.0/botorch_core/tests/edge_cases.rs +407 -0
  117. botorch_rust-0.1.0/botorch_core/tests/fixtures/constant_y_d2_n5.json +774 -0
  118. botorch_rust-0.1.0/botorch_core/tests/fixtures/duplicates_d2_n10.json +1129 -0
  119. botorch_rust-0.1.0/botorch_core/tests/fixtures/explicit_bounds_d2_n20.json +2306 -0
  120. botorch_rust-0.1.0/botorch_core/tests/fixtures/fixed_noise_matern_d5_n5_normalize.json +1179 -0
  121. botorch_rust-0.1.0/botorch_core/tests/fixtures/fixed_noise_rbf_d2_n20.json +2377 -0
  122. botorch_rust-0.1.0/botorch_core/tests/fixtures/fixed_zero_noise_identical_x.json +677 -0
  123. botorch_rust-0.1.0/botorch_core/tests/fixtures/legacy_gamma_d2_n20.json +2747 -0
  124. botorch_rust-0.1.0/botorch_core/tests/fixtures/matern_d1_n5.json +648 -0
  125. botorch_rust-0.1.0/botorch_core/tests/fixtures/matern_d2_n20.json +2289 -0
  126. botorch_rust-0.1.0/botorch_core/tests/fixtures/matern_d5_n20_normalize.json +3986 -0
  127. botorch_rust-0.1.0/botorch_core/tests/fixtures/n1_d2.json +598 -0
  128. botorch_rust-0.1.0/botorch_core/tests/fixtures/no_outcome_transform_d2_n20.json +2283 -0
  129. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase2/acqf_fixed_noise_rbf_d2_n10_no_outcome.json +21039 -0
  130. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase2/acqf_matern_d3_n15_normalize.json +26037 -0
  131. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase2/acqf_rbf_d2_n12.json +23088 -0
  132. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase2/optimize_hartmann6.json +3285 -0
  133. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase2/test_functions.json +2446 -0
  134. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase4/batched_b2_m2_d2_n7_fixed_noise.json +1387 -0
  135. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase4/batched_b2_m2_d2_n8_normalize.json +1374 -0
  136. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase4/batched_b2x2_m1_d3_n9_normalize_per_batch.json +1153 -0
  137. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase4/batched_b3_m1_d2_n10.json +959 -0
  138. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase4/list_mixed_d3.json +10230 -0
  139. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase4/list_three_kernels_d2.json +9026 -0
  140. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase4/list_two_single_d2.json +8472 -0
  141. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase4/mo_fixed_noise_d2_n10_m2.json +8386 -0
  142. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase4/mo_legacy_gamma_d2_n11_m3.json +9445 -0
  143. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase4/mo_matern_d3_n15_m3_normalize.json +11079 -0
  144. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase4/mo_no_outcome_d4_n9_m2.json +8533 -0
  145. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase4/mo_rbf_d2_n12_m2.json +9030 -0
  146. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase4/so_rbf_d2_n10.json +7637 -0
  147. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase4b/mc_list_mixed_d3.json +55882 -0
  148. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase4b/mc_list_two_single_d2.json +35137 -0
  149. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase4b/mc_m1_rbf_d2_n10.json +19854 -0
  150. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase4b/mc_m2_rbf_d2_n12.json +38802 -0
  151. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase4b/mc_m3_matern_d3_n15_normalize.json +64192 -0
  152. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase4b/optimize_constrained.json +1459 -0
  153. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase4b/polytope.json +370 -0
  154. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5a_tf/mo_test_functions.json +31550 -0
  155. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5a_tf/sampling.json +848 -0
  156. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5a_utils/box_decompositions.json +1 -0
  157. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5a_utils/box_utils.json +1 -0
  158. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5a_utils/hypervolume.json +1 -0
  159. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5a_utils/pareto.json +1 -0
  160. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5a_utils/pareto_nan.json +1 -0
  161. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5a_utils/sampling.json +1 -0
  162. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5a_utils/scalarization.json +1 -0
  163. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5b/list_2_1_d2.json +1 -0
  164. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5b/m2_rbf_d2_n10.json +1 -0
  165. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5b/m3_matern_d3_n10_normalize.json +1 -0
  166. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5b/m4_fixed_noise_d2_n8.json +1 -0
  167. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5b/misc.json +1 -0
  168. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5b/pending_3392.json +1 -0
  169. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5c_entropy/estimators.json +1 -0
  170. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5c_entropy/list_1_1_d2.json +1 -0
  171. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5c_entropy/m1_scale_d2_n8.json +1 -0
  172. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5c_entropy/m2_fixed_noise_d2_n8.json +1 -0
  173. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5c_entropy/m2_rbf_d2_n10.json +1 -0
  174. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5c_entropy/m3_matern_d3_n10_normalize.json +1 -0
  175. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5c_hvkg/conditioning.json +1 -0
  176. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5c_hvkg/conditioning_3396.json +1 -0
  177. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5c_hvkg/conditioning_3399.json +1 -0
  178. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5c_hvkg/cost.json +1 -0
  179. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5c_hvkg/hvkg.json +1 -0
  180. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5c_hvkg/optimize.json +1 -0
  181. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5c_robust/acquisition.json +1 -0
  182. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5c_robust/momf.json +1 -0
  183. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5c_robust/nsga2.json +1 -0
  184. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5c_robust/perturbation.json +1 -0
  185. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5c_robust/risk_measures.json +1 -0
  186. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5c_robust/risk_measures_3392.json +1 -0
  187. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5d_deterministic/mo_taf_d2_two_sources.json +1 -0
  188. botorch_rust-0.1.0/botorch_core/tests/fixtures/phase5d_deterministic/mo_taf_d3_three_sources.json +1 -0
  189. botorch_rust-0.1.0/botorch_core/tests/fixtures/rbf_d1_n5.json +648 -0
  190. botorch_rust-0.1.0/botorch_core/tests/fixtures/rbf_d2_n20_normalize.json +2297 -0
  191. botorch_rust-0.1.0/botorch_core/tests/fixtures/rbf_d5_n20.json +3972 -0
  192. botorch_rust-0.1.0/botorch_core/tests/fixtures/scale_matern_gamma_d2_n20.json +2747 -0
  193. botorch_rust-0.1.0/botorch_core/tests/fixtures/scale_rbf_d5_n20.json +4430 -0
  194. botorch_rust-0.1.0/botorch_core/tests/fixtures/unity_lcemgp/interval.json +1 -0
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