bossanova 0.1.0.dev14__tar.gz → 0.1.0.dev15__tar.gz

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  1. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/PKG-INFO +1 -1
  2. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/__init__.py +4 -0
  3. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/containers/builders/state.py +2 -1
  4. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/containers/structs/explore.py +88 -6
  5. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/containers/structs/state.py +20 -4
  6. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/__init__.py +3 -0
  7. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/config.py +56 -0
  8. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/inference/contrasts.py +107 -7
  9. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/inference/multiplicity.py +3 -2
  10. bossanova-0.1.0.dev15/bossanova/internal/maths/rounding.py +89 -0
  11. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/common/__init__.py +14 -0
  12. bossanova-0.1.0.dev15/bossanova/internal/operations/common/contrast_registry.py +61 -0
  13. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/compare/compare.py +11 -7
  14. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/marginal/__init__.py +12 -0
  15. bossanova-0.1.0.dev15/bossanova/internal/operations/marginal/bracket_contrasts.py +565 -0
  16. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/marginal/compute.py +185 -4
  17. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/marginal/conditions.py +43 -1
  18. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/marginal/contrasts.py +146 -16
  19. bossanova-0.1.0.dev15/bossanova/internal/operations/marginal/explore.py +173 -0
  20. bossanova-0.1.0.dev15/bossanova/internal/operations/marginal/explore_parser.py +754 -0
  21. bossanova-0.1.0.dev15/bossanova/internal/operations/marginal/explore_scanner.py +81 -0
  22. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/marginal/inference.py +11 -8
  23. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/viz/mem.py +1 -4
  24. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/model/core.py +145 -29
  25. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/model/summary.py +30 -30
  26. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/pyproject.toml +1 -1
  27. bossanova-0.1.0.dev14/bossanova/internal/operations/marginal/explore.py +0 -494
  28. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/.gitignore +0 -0
  29. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/LICENSE +0 -0
  30. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/README.md +0 -0
  31. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/data/README.md +0 -0
  32. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/data/__init__.py +0 -0
  33. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/data/advertising.csv +0 -0
  34. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/data/cake.csv +0 -0
  35. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/data/chickweight.csv +0 -0
  36. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/data/credit.csv +0 -0
  37. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/data/gammas.csv +0 -0
  38. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/data/mtcars.csv +0 -0
  39. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/data/penguins.csv +0 -0
  40. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/data/poker.csv +0 -0
  41. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/data/sleep.csv +0 -0
  42. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/data/titanic.csv +0 -0
  43. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/data/titanic_test.csv +0 -0
  44. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/data/titanic_train.csv +0 -0
  45. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/distributions/__init__.py +0 -0
  46. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/distributions/continuous.py +0 -0
  47. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/distributions/discrete.py +0 -0
  48. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/distributions/varying.py +0 -0
  49. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/expressions.py +0 -0
  50. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/__init__.py +0 -0
  51. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/containers/__init__.py +0 -0
  52. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/containers/builders/__init__.py +0 -0
  53. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/containers/builders/data.py +0 -0
  54. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/containers/builders/dataframes.py +0 -0
  55. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/containers/builders/resamples.py +0 -0
  56. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/containers/builders/results.py +0 -0
  57. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/containers/builders/specs.py +0 -0
  58. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/containers/schemas.py +0 -0
  59. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/containers/structs/__init__.py +0 -0
  60. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/containers/structs/data.py +0 -0
  61. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/containers/structs/display.py +0 -0
  62. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/containers/structs/formula.py +0 -0
  63. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/containers/structs/specs.py +0 -0
  64. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/containers/validators.py +0 -0
  65. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/backend/__init__.py +0 -0
  66. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/backend/dispatch.py +0 -0
  67. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/backend/jax.py +0 -0
  68. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/backend/numpy.py +0 -0
  69. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/backend/protocol.py +0 -0
  70. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/batching.py +0 -0
  71. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/convergence.py +0 -0
  72. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/design/__init__.py +0 -0
  73. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/design/coding.py +0 -0
  74. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/design/names.py +0 -0
  75. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/design/reference.py +0 -0
  76. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/design/z_matrix.py +0 -0
  77. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/differentiation.py +0 -0
  78. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/distributions/__init__.py +0 -0
  79. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/distributions/algebra.py +0 -0
  80. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/distributions/base.py +0 -0
  81. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/distributions/core.py +0 -0
  82. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/distributions/derived.py +0 -0
  83. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/distributions/factories.py +0 -0
  84. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/distributions/plotting.py +0 -0
  85. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/distributions/probability.py +0 -0
  86. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/family/__init__.py +0 -0
  87. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/family/binomial.py +0 -0
  88. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/family/create.py +0 -0
  89. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/family/gamma.py +0 -0
  90. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/family/gaussian.py +0 -0
  91. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/family/links.py +0 -0
  92. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/family/poisson.py +0 -0
  93. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/family/response.py +0 -0
  94. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/family/schema.py +0 -0
  95. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/family/tdist.py +0 -0
  96. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/inference/__init__.py +0 -0
  97. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/inference/diagnostics.py +0 -0
  98. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/inference/estimation.py +0 -0
  99. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/inference/hypothesis.py +0 -0
  100. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/inference/information_criteria.py +0 -0
  101. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/inference/profile.py +0 -0
  102. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/inference/sandwich.py +0 -0
  103. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/inference/satterthwaite.py +0 -0
  104. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/inference/wald_variance.py +0 -0
  105. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/inference/welch.py +0 -0
  106. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/linalg/__init__.py +0 -0
  107. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/linalg/qr.py +0 -0
  108. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/linalg/schur.py +0 -0
  109. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/linalg/sparse.py +0 -0
  110. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/linalg/svd.py +0 -0
  111. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/predict.py +0 -0
  112. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/rng.py +0 -0
  113. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/solvers/__init__.py +0 -0
  114. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/solvers/glm.py +0 -0
  115. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/solvers/glmer.py +0 -0
  116. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/solvers/heuristics.py +0 -0
  117. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/solvers/initialization.py +0 -0
  118. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/solvers/lambda_builder.py +0 -0
  119. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/solvers/lambda_sparse.py +0 -0
  120. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/solvers/lambda_template.py +0 -0
  121. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/solvers/lmer.py +0 -0
  122. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/solvers/optimize.py +0 -0
  123. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/solvers/pirls_sparse.py +0 -0
  124. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/solvers/quadrature.py +0 -0
  125. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/tolerances.py +0 -0
  126. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/transforms.py +0 -0
  127. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/variance.py +0 -0
  128. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/maths/weights.py +0 -0
  129. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/__init__.py +0 -0
  130. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/bundle.py +0 -0
  131. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/common/data_utils.py +0 -0
  132. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/common/factors.py +0 -0
  133. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/common/formula_utils.py +0 -0
  134. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/compare/__init__.py +0 -0
  135. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/compare/cv.py +0 -0
  136. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/compare/deviance.py +0 -0
  137. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/compare/f_test.py +0 -0
  138. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/compare/helpers.py +0 -0
  139. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/compare/lrt.py +0 -0
  140. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/compare/lrt_compare.py +0 -0
  141. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/compare/refit.py +0 -0
  142. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/contrasts.py +0 -0
  143. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/convergence.py +0 -0
  144. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/diagnostics.py +0 -0
  145. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/fit/__init__.py +0 -0
  146. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/fit/dispatch.py +0 -0
  147. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/fit/glm.py +0 -0
  148. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/fit/glmer.py +0 -0
  149. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/fit/lmer.py +0 -0
  150. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/fit/ols.py +0 -0
  151. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/fit/rank.py +0 -0
  152. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/formula/__init__.py +0 -0
  153. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/formula/design.py +0 -0
  154. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/formula/encoding.py +0 -0
  155. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/formula/evaluate.py +0 -0
  156. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/formula/evaluate_newdata.py +0 -0
  157. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/formula/evaluate_transforms.py +0 -0
  158. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/formula/helpers.py +0 -0
  159. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/formula/parse.py +0 -0
  160. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/formula/parser/__init__.py +0 -0
  161. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/formula/parser/expr.py +0 -0
  162. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/formula/parser/parser.py +0 -0
  163. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/formula/parser/scanner.py +0 -0
  164. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/formula/parser/token.py +0 -0
  165. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/formula/random_effects.py +0 -0
  166. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/infer/__init__.py +0 -0
  167. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/infer/asymptotic.py +0 -0
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  210. {bossanova-0.1.0.dev14 → bossanova-0.1.0.dev15}/bossanova/internal/operations/transforms.py +0 -0
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@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: bossanova
3
- Version: 0.1.0.dev14
3
+ Version: 0.1.0.dev15
4
4
  Summary: Bridging statistical cultures with some jazz
5
5
  Author: Eshin Jolly
6
6
  License-Expression: MIT
@@ -15,7 +15,9 @@ except (ImportError, AttributeError):
15
15
 
16
16
  # Configuration
17
17
  from bossanova.internal.maths.config import ( # noqa: E402
18
+ get_display_digits,
18
19
  get_singular_tolerance,
20
+ set_display_digits,
19
21
  set_singular_tolerance,
20
22
  )
21
23
 
@@ -42,11 +44,13 @@ __all__ = [
42
44
  "compare",
43
45
  "expressions",
44
46
  "get_backend",
47
+ "get_display_digits",
45
48
  "get_singular_tolerance",
46
49
  "load_dataset",
47
50
  "lrt",
48
51
  "model",
49
52
  "set_backend",
53
+ "set_display_digits",
50
54
  "set_singular_tolerance",
51
55
  "show_datasets",
52
56
  "viz",
@@ -222,7 +222,8 @@ def build_mee_state(
222
222
  L_matrix: Design matrix for delta method inference (optional).
223
223
  Shape (n_estimates, n_coef). For EMMs this is X_ref.
224
224
  contrast_method: Original contrast type for multiplicity adjustment
225
- ("pairwise", "revpairwise", "sequential", "poly", or None).
225
+ ("pairwise", "sequential", "poly", "treatment", "sum",
226
+ "helmert", or None).
226
227
  n_contrast_levels: Number of EMM levels before contrasting (family size).
227
228
  link: Link function name for response-scale CI back-transformation.
228
229
  L_matrix_link: Link-scale L_matrix for CI back-transformation.
@@ -4,29 +4,93 @@ from attrs import field, frozen, validators
4
4
 
5
5
  __all__ = [
6
6
  "Condition",
7
+ "ContrastExpr",
8
+ "ContrastItem",
9
+ "ContrastOperand",
7
10
  "ExploreFormula",
8
11
  "ExploreFormulaError",
9
12
  ]
10
13
 
11
14
 
15
+ # =====================================================================
16
+ # Bracket contrast expression containers
17
+ # =====================================================================
18
+
19
+
20
+ @frozen
21
+ class ContrastOperand:
22
+ """One side of a bracket contrast item.
23
+
24
+ Represents a single operand in a contrast like ``A - B`` or
25
+ ``(A + B) - C``.
26
+
27
+ Attributes:
28
+ levels: Level names for this operand. Empty tuple for wildcard.
29
+ Multiple levels indicate a grouped mean (e.g., ``(A + B)``
30
+ produces ``levels=("A", "B")``).
31
+ is_wildcard: True for the ``*`` operator, which expands to all
32
+ levels not mentioned on the other side.
33
+ """
34
+
35
+ levels: tuple[str, ...] = field(factory=tuple, converter=tuple)
36
+ is_wildcard: bool = field(default=False, validator=validators.instance_of(bool))
37
+
38
+
39
+ @frozen
40
+ class ContrastItem:
41
+ """A single contrast: left operand minus right operand.
42
+
43
+ Represents one ``left - right`` comparison in a bracket contrast
44
+ expression like ``Drug[Active - Placebo]``.
45
+
46
+ Attributes:
47
+ left: Left operand (positive side).
48
+ right: Right operand (negative side).
49
+ """
50
+
51
+ left: ContrastOperand = field(validator=validators.instance_of(ContrastOperand))
52
+ right: ContrastOperand = field(validator=validators.instance_of(ContrastOperand))
53
+
54
+
55
+ @frozen
56
+ class ContrastExpr:
57
+ """Bracket contrast expression: ``Drug[A - B, C - D]``.
58
+
59
+ Represents a complete bracket contrast specification parsed from
60
+ explore formula syntax.
61
+
62
+ Attributes:
63
+ var: Variable name (e.g., ``"Drug"``).
64
+ items: Tuple of contrast items to compute.
65
+ """
66
+
67
+ var: str = field(validator=validators.instance_of(str))
68
+ items: tuple[ContrastItem, ...] = field(converter=tuple)
69
+
70
+
12
71
  @frozen
13
72
  class Condition:
14
73
  """A conditioning specification in explore formula.
15
74
 
16
- Represents a variable to condition on, optionally with specific values
17
- or a method for generating values.
75
+ Represents a variable to condition on, optionally with specific values,
76
+ a method for generating values, or a bracket contrast expression.
18
77
 
19
78
  Attributes:
20
79
  var: Variable name to condition on.
21
80
  at_values: Specific values to evaluate at (e.g., (50.0,) or ("A", "B")).
22
81
  at_range: Number of evenly-spaced values across the variable's range.
23
82
  at_quantile: Number of quantile values to use.
83
+ contrast_expr: Bracket contrast expression on this condition variable
84
+ (e.g., from ``Dose[High - Low]`` on the RHS). When set, the
85
+ variable is treated as a grid categorical during condition
86
+ resolution, and the contrast is applied as a post-processing step.
24
87
  """
25
88
 
26
89
  var: str = field(validator=validators.instance_of(str))
27
90
  at_values: tuple | None = field(default=None)
28
91
  at_range: int | None = field(default=None)
29
92
  at_quantile: int | None = field(default=None)
93
+ contrast_expr: ContrastExpr | None = field(default=None)
30
94
 
31
95
 
32
96
  @frozen
@@ -38,10 +102,16 @@ class ExploreFormula:
38
102
 
39
103
  Attributes:
40
104
  focal_var: The variable to compute marginal effects for.
41
- contrast_type: Type of contrast (pairwise, revpairwise, sequential, poly)
42
- or None for simple EMMs.
105
+ contrast_type: Type of contrast (pairwise, sequential, poly, treatment,
106
+ sum, helmert, custom) or None for simple EMMs. Set to ``"custom"``
107
+ for bracket contrast expressions.
43
108
  contrast_degree: Degree parameter for polynomial contrasts (default None
44
109
  means use n_levels - 1, i.e., maximum degree).
110
+ contrast_ref: Reference level for treatment/dummy contrasts
111
+ (e.g., ``"Placebo"`` from ``treatment(Drug, ref=Placebo)``).
112
+ contrast_expr: Bracket contrast expression AST (e.g., from
113
+ ``Drug[Active - Placebo]`` syntax). None for named contrast
114
+ functions or simple EMMs.
45
115
  conditions: Tuple of Condition objects specifying conditioning variables.
46
116
  focal_at_values: Specific values to evaluate the focal variable at
47
117
  (e.g., from ``Days@[0, 3, 6, 9]`` syntax). None means use all levels.
@@ -54,6 +124,8 @@ class ExploreFormula:
54
124
  focal_var: str = field(validator=validators.instance_of(str))
55
125
  contrast_type: str | None = field(default=None)
56
126
  contrast_degree: int | None = field(default=None)
127
+ contrast_ref: str | None = field(default=None)
128
+ contrast_expr: ContrastExpr | None = field(default=None)
57
129
  conditions: tuple[Condition, ...] = field(factory=tuple, converter=tuple)
58
130
  focal_at_values: tuple[float | str, ...] | None = field(default=None)
59
131
  focal_at_range: int | None = field(default=None)
@@ -82,14 +154,24 @@ class ExploreFormula:
82
154
 
83
155
  @property
84
156
  def has_contrast(self) -> bool:
85
- """Return True if a contrast function is specified."""
86
- return self.contrast_type is not None
157
+ """Return True if any contrast is specified (named function or bracket expr)."""
158
+ return self.contrast_type is not None or self.contrast_expr is not None
159
+
160
+ @property
161
+ def has_contrast_expr(self) -> bool:
162
+ """Return True if a bracket contrast expression is specified."""
163
+ return self.contrast_expr is not None
87
164
 
88
165
  @property
89
166
  def has_conditions(self) -> bool:
90
167
  """Return True if conditioning variables are specified."""
91
168
  return len(self.conditions) > 0
92
169
 
170
+ @property
171
+ def has_rhs_contrasts(self) -> bool:
172
+ """Return True if any RHS condition has a bracket contrast expression."""
173
+ return any(c.contrast_expr is not None for c in self.conditions)
174
+
93
175
 
94
176
  class ExploreFormulaError(ValueError):
95
177
  """Error in explore formula syntax.
@@ -219,13 +219,18 @@ class MeeState:
219
219
  explore_formula: The explore formula string that generated this result.
220
220
  focal_var: The primary variable being explored.
221
221
  type: Type of marginal effect ("means", "slopes", "contrasts").
222
+ weights: Averaging philosophy used: ``"equal"`` (balanced reference grid,
223
+ emmeans-style) or ``"observed"`` (g-computation over observed data).
222
224
  L_matrix: Design matrix for delta method inference. Shape (n_estimates, n_coef).
223
225
  For EMMs, this is X_ref; for slopes, a coefficient selector row.
224
226
  contrast_method: Original contrast type for multiplicity adjustment
225
- ("pairwise", "revpairwise", "sequential", "poly", or None).
227
+ ("pairwise", "sequential", "poly", "treatment", "sum",
228
+ "helmert", or None).
226
229
  n_contrast_levels: Number of EMM levels before contrasting (family size for Tukey).
227
- link: Link function name for response-scale back-transformation (set when units="data").
228
- L_matrix_link: Link-scale L_matrix for CI back-transformation (set when units="data").
230
+ link: Link function name for response-scale back-transformation (set when units="data"
231
+ and weights="equal").
232
+ L_matrix_link: Link-scale L_matrix for CI back-transformation (set when units="data"
233
+ and weights="equal").
229
234
  inference_method: Inference method used (``"asymp"``, ``"boot"``,
230
235
  ``"perm"``, or ``None``). Controls which columns appear in
231
236
  the ``.effects`` DataFrame.
@@ -253,6 +258,7 @@ class MeeState:
253
258
  focal_var: str = field(validator=validators.instance_of(str))
254
259
  type: str = field(validator=validators.in_(("means", "slopes", "contrasts")))
255
260
  units: str = field(default="link", validator=validators.in_(("link", "data")))
261
+ weights: str = field(default="equal", validator=validators.in_(("equal", "observed")))
256
262
 
257
263
  # Design matrix for delta method inference (optional)
258
264
  # Shape: (n_estimates, n_coef). For EMMs, this is X_ref; for slopes, a selector row.
@@ -264,7 +270,17 @@ class MeeState:
264
270
  contrast_method: str | None = field(
265
271
  default=None,
266
272
  validator=validators.optional(
267
- validators.in_(("pairwise", "revpairwise", "sequential", "poly"))
273
+ validators.in_(
274
+ (
275
+ "pairwise",
276
+ "sequential",
277
+ "poly",
278
+ "treatment",
279
+ "sum",
280
+ "helmert",
281
+ "custom",
282
+ )
283
+ )
268
284
  ),
269
285
  )
270
286
  n_contrast_levels: int | None = field(default=None)
@@ -28,6 +28,7 @@ from bossanova.internal.maths.batching import (
28
28
  get_available_memory_gb,
29
29
  )
30
30
  from bossanova.internal.maths.config import is_singular
31
+ from bossanova.internal.maths.rounding import round_float_columns, round_sigfigs
31
32
  from bossanova.internal.maths.inference import (
32
33
  Chi2TestResult,
33
34
  FTestResult,
@@ -240,6 +241,8 @@ __all__ = [
240
241
  "poly_numeric",
241
242
  "poly_numeric_labels",
242
243
  "qr_solve",
244
+ "round_float_columns",
245
+ "round_sigfigs",
243
246
  "sequential_contrast",
244
247
  "sequential_labels",
245
248
  "sum_contrast",
@@ -12,15 +12,71 @@ if TYPE_CHECKING:
12
12
  import numpy as np
13
13
 
14
14
  __all__ = [
15
+ "get_display_digits",
15
16
  "get_singular_tolerance",
16
17
  "is_singular",
18
+ "set_display_digits",
17
19
  "set_singular_tolerance",
18
20
  ]
19
21
 
22
+ # Default significant figures for DataFrame display output.
23
+ # Matches R's summary() convention of 4 significant digits.
24
+ _DISPLAY_DIGITS: int = 4
25
+
20
26
  # Default singular tolerance matches lme4's default (utilities.R:924-928)
21
27
  _SINGULAR_TOLERANCE: float = 1e-4
22
28
 
23
29
 
30
+ def get_display_digits() -> int:
31
+ """Get the number of significant figures for DataFrame display output.
32
+
33
+ Controls how many significant figures are shown in user-facing
34
+ DataFrames returned by model properties (``.params``, ``.effects``,
35
+ ``.diagnostics``, etc.) and ``compare()``. Matches R's ``signif()``
36
+ convention.
37
+
38
+ Returns:
39
+ Current display digits setting (default 4).
40
+
41
+ Examples:
42
+ ```python
43
+ from bossanova import get_display_digits
44
+ get_display_digits()
45
+ # 4
46
+ ```
47
+ """
48
+ return _DISPLAY_DIGITS
49
+
50
+
51
+ def set_display_digits(digits: int) -> None:
52
+ """Set the number of significant figures for DataFrame display output.
53
+
54
+ Controls how many significant figures are shown in user-facing
55
+ DataFrames returned by model properties (``.params``, ``.effects``,
56
+ ``.diagnostics``, etc.) and ``compare()``. Matches R's ``signif()``
57
+ convention.
58
+
59
+ The ``summary()`` method has its own ``digits`` parameter and is
60
+ unaffected by this setting.
61
+
62
+ Args:
63
+ digits: Number of significant figures. Must be >= 1.
64
+
65
+ Raises:
66
+ ValueError: If digits is less than 1.
67
+
68
+ Examples:
69
+ ```python
70
+ from bossanova import set_display_digits
71
+ set_display_digits(6) # Show 6 significant figures
72
+ ```
73
+ """
74
+ global _DISPLAY_DIGITS
75
+ if digits < 1:
76
+ raise ValueError(f"digits must be >= 1, got {digits}")
77
+ _DISPLAY_DIGITS = digits
78
+
79
+
24
80
  def get_singular_tolerance() -> float:
25
81
  """Get the current singular tolerance for mixed models.
26
82
 
@@ -7,9 +7,11 @@ import numpy as np
7
7
  __all__ = [
8
8
  "build_all_pairwise_contrast",
9
9
  "build_contrast_matrix",
10
+ "build_helmert_contrast",
10
11
  "build_pairwise_contrast",
11
12
  "build_sequential_contrast",
12
13
  "build_sum_to_zero_contrast",
14
+ "build_treatment_contrast",
13
15
  "compose_contrast",
14
16
  "get_contrast_labels",
15
17
  ]
@@ -224,6 +226,98 @@ def build_sum_to_zero_contrast(n_levels: int) -> np.ndarray:
224
226
  return C
225
227
 
226
228
 
229
+ def build_treatment_contrast(n_levels: int, ref_idx: int = 0) -> np.ndarray:
230
+ """Build treatment (Dunnett-style) contrasts against a reference level.
231
+
232
+ Creates n_levels - 1 contrasts, each comparing one non-reference level
233
+ to the specified reference level.
234
+
235
+ Args:
236
+ n_levels: Number of EMM levels (factor levels).
237
+ ref_idx: Index of the reference level (0-based).
238
+
239
+ Returns:
240
+ Contrast matrix of shape (n_levels - 1, n_levels).
241
+ Row i compares non-reference level i to the reference.
242
+
243
+ Raises:
244
+ ValueError: If n_levels < 1 or ref_idx out of range.
245
+
246
+ Examples:
247
+ >>> C = build_treatment_contrast(3, ref_idx=0)
248
+ >>> C
249
+ array([[-1., 1., 0.],
250
+ [-1., 0., 1.]])
251
+
252
+ >>> C = build_treatment_contrast(3, ref_idx=2)
253
+ >>> C
254
+ array([[ 1., 0., -1.],
255
+ [ 0., 1., -1.]])
256
+ """
257
+ if n_levels < 1:
258
+ raise ValueError(f"n_levels must be >= 1, got {n_levels}")
259
+ if ref_idx < 0 or ref_idx >= n_levels:
260
+ raise ValueError(f"ref_idx must be in [0, {n_levels - 1}], got {ref_idx}")
261
+
262
+ if n_levels == 1:
263
+ return np.zeros((0, 1))
264
+
265
+ C = np.zeros((n_levels - 1, n_levels))
266
+ row = 0
267
+ for i in range(n_levels):
268
+ if i == ref_idx:
269
+ continue
270
+ C[row, ref_idx] = -1
271
+ C[row, i] = 1
272
+ row += 1
273
+
274
+ return C
275
+
276
+
277
+ def build_helmert_contrast(n_levels: int) -> np.ndarray:
278
+ """Build Helmert contrasts (each level vs mean of previous levels).
279
+
280
+ Creates n_levels - 1 contrasts where level k is compared to
281
+ the mean of levels 0, 1, ..., k-1. Useful for ordered factors
282
+ where you want to test if each successive level differs from
283
+ the average of all prior levels.
284
+
285
+ Args:
286
+ n_levels: Number of EMM levels (factor levels).
287
+
288
+ Returns:
289
+ Contrast matrix of shape (n_levels - 1, n_levels).
290
+
291
+ Raises:
292
+ ValueError: If n_levels < 1.
293
+
294
+ Examples:
295
+ >>> C = build_helmert_contrast(3)
296
+ >>> C
297
+ array([[-1. , 1. , 0. ],
298
+ [-0.5, -0.5, 1. ]])
299
+
300
+ >>> C = build_helmert_contrast(4)
301
+ >>> C
302
+ array([[-1. , 1. , 0. , 0. ],
303
+ [-0.5 , -0.5 , 1. , 0. ],
304
+ [-0.33333333, -0.33333333, -0.33333333, 1. ]])
305
+ """
306
+ if n_levels < 1:
307
+ raise ValueError(f"n_levels must be >= 1, got {n_levels}")
308
+
309
+ if n_levels == 1:
310
+ return np.zeros((0, 1))
311
+
312
+ C = np.zeros((n_levels - 1, n_levels))
313
+ for k in range(1, n_levels):
314
+ # Level k vs mean of levels 0..k-1
315
+ C[k - 1, :k] = -1.0 / k
316
+ C[k - 1, k] = 1.0
317
+
318
+ return C
319
+
320
+
227
321
  def build_contrast_matrix(
228
322
  contrast_type: str | dict,
229
323
  levels: list,
@@ -237,9 +331,10 @@ def build_contrast_matrix(
237
331
  Args:
238
332
  contrast_type: Type of contrast:
239
333
  - "pairwise": All pairwise comparisons (k(k-1)/2 contrasts)
240
- - "revpairwise": Reversed pairwise comparisons
241
334
  - "trt.vs.ctrl" or "treatment": Compare each level to first level
242
335
  - "sequential": Successive differences (level[i+1] - level[i])
336
+ - "sum": Each level vs grand mean (deviation coding)
337
+ - "helmert": Each level vs mean of previous levels
243
338
  - dict: Custom contrasts with names as keys and weights as values
244
339
  levels: List of factor levels.
245
340
  normalize: If True, normalize custom contrasts to sum to 1/-1.
@@ -281,10 +376,6 @@ def build_contrast_matrix(
281
376
  # All pairwise comparisons: B-A, C-A, C-B, ...
282
377
  return build_all_pairwise_contrast(n_levels)
283
378
 
284
- elif contrast_type == "revpairwise":
285
- # Reversed pairwise: A-B, A-C, B-C, ...
286
- return -build_all_pairwise_contrast(n_levels)
287
-
288
379
  elif contrast_type in ("trt.vs.ctrl", "treatment"):
289
380
  # Each level vs first level
290
381
  return build_pairwise_contrast(n_levels)
@@ -293,14 +384,23 @@ def build_contrast_matrix(
293
384
  # Successive differences: B-A, C-B, D-C, ...
294
385
  return build_sequential_contrast(n_levels)
295
386
 
387
+ elif contrast_type == "sum":
388
+ # Each level vs grand mean (deviation coding)
389
+ return build_sum_to_zero_contrast(n_levels)
390
+
391
+ elif contrast_type == "helmert":
392
+ # Each level vs mean of previous levels
393
+ return build_helmert_contrast(n_levels)
394
+
296
395
  else:
297
396
  raise ValueError(
298
397
  f"Unknown contrast type: {contrast_type!r}\n\n"
299
398
  "Supported types:\n"
300
399
  " - 'pairwise': All pairwise comparisons\n"
301
- " - 'revpairwise': Reversed pairwise\n"
302
400
  " - 'sequential': Successive differences (level[i+1] - level[i])\n"
303
- " - 'trt.vs.ctrl': Each level vs first level\n"
401
+ " - 'trt.vs.ctrl' / 'treatment': Each level vs first level\n"
402
+ " - 'sum': Each level vs grand mean\n"
403
+ " - 'helmert': Each level vs mean of previous levels\n"
304
404
  " - dict: Custom contrasts {name: weights}"
305
405
  )
306
406
 
@@ -3,8 +3,9 @@
3
3
  Provides critical value computation for multiplicity-adjusted CIs,
4
4
  matching R's emmeans defaults:
5
5
 
6
- - Tukey HSD for pairwise/revpairwise contrasts (studentized range).
7
- - Multivariate-t (MVT) for sequential contrasts (Genz-Bretz CDF + root-finding).
6
+ - Tukey HSD for pairwise contrasts (studentized range).
7
+ - Multivariate-t (MVT) for sequential, treatment, sum, helmert contrasts
8
+ (Genz-Bretz CDF + root-finding).
8
9
  - No adjustment for polynomial contrasts.
9
10
 
10
11
  Internal exports:
@@ -0,0 +1,89 @@
1
+ """Significant-figures rounding for display output.
2
+
3
+ Provides vectorized rounding to N significant figures, matching R's
4
+ ``signif()`` behavior. Used at the user-facing API boundary to produce
5
+ clean DataFrame output without altering internal computation precision.
6
+ """
7
+
8
+ from __future__ import annotations
9
+
10
+ import numpy as np
11
+ import polars as pl
12
+
13
+ __all__ = [
14
+ "round_float_columns",
15
+ "round_sigfigs",
16
+ ]
17
+
18
+
19
+ def round_sigfigs(x: np.ndarray, n: int = 4) -> np.ndarray:
20
+ """Round array values to *n* significant figures.
21
+
22
+ Matches R's ``signif()`` behavior: the *n* most significant digits
23
+ are preserved regardless of magnitude.
24
+
25
+ Args:
26
+ x: Input array (float64). May contain NaN or inf values.
27
+ n: Number of significant figures. Must be >= 1.
28
+
29
+ Returns:
30
+ Array of the same shape with values rounded to *n* significant
31
+ figures. NaN and inf values are passed through unchanged.
32
+
33
+ Examples:
34
+ >>> round_sigfigs(np.array([0.00012345, 3.14159, 12345.68]), n=4)
35
+ array([1.235e-04, 3.142e+00, 1.235e+04])
36
+ """
37
+ x = np.asarray(x, dtype=np.float64)
38
+ result = x.copy()
39
+
40
+ # Only round finite, non-zero values
41
+ mask = np.isfinite(x) & (x != 0)
42
+ if not mask.any():
43
+ return result
44
+
45
+ vals = x[mask]
46
+ magnitude = np.floor(np.log10(np.abs(vals)))
47
+ shift = 10.0 ** (magnitude - n + 1)
48
+ result[mask] = np.round(vals / shift) * shift
49
+
50
+ return result
51
+
52
+
53
+ def round_float_columns(df: pl.DataFrame, digits: int = 4) -> pl.DataFrame:
54
+ """Round all Float64 columns to *digits* significant figures.
55
+
56
+ Non-float columns (String, Int32, Int64, etc.) are passed through
57
+ unchanged. Null values within float columns are preserved.
58
+
59
+ Args:
60
+ df: Input DataFrame.
61
+ digits: Number of significant figures. Must be >= 1.
62
+
63
+ Returns:
64
+ New DataFrame with Float64 columns rounded.
65
+ """
66
+ float_cols = [c for c in df.columns if df[c].dtype == pl.Float64]
67
+ if not float_cols:
68
+ return df
69
+
70
+ replacements = []
71
+ for col_name in float_cols:
72
+ series = df[col_name]
73
+ if series.null_count() == len(series):
74
+ # All nulls — nothing to round
75
+ replacements.append(series)
76
+ continue
77
+
78
+ arr = series.to_numpy(allow_copy=True)
79
+ rounded = round_sigfigs(arr, n=digits)
80
+
81
+ # Preserve nulls from the original series
82
+ new_series = pl.Series(col_name, rounded)
83
+ if series.null_count() > 0:
84
+ null_mask = series.is_null()
85
+ new_series = new_series.set(null_mask, None)
86
+
87
+ replacements.append(new_series)
88
+
89
+ return df.with_columns(replacements)
@@ -1,5 +1,13 @@
1
1
  """Common utilities shared across operations modules."""
2
2
 
3
+ from bossanova.internal.operations.common.contrast_registry import (
4
+ CONTRAST_ALIASES,
5
+ DEGREE_FUNCTIONS,
6
+ ORDER_DEPENDENT,
7
+ REF_FUNCTIONS,
8
+ VALID_CONTRAST_FUNCTIONS,
9
+ resolve_contrast_name,
10
+ )
3
11
  from bossanova.internal.operations.common.data_utils import filter_valid_rows
4
12
  from bossanova.internal.operations.common.factors import (
5
13
  get_factor_levels,
@@ -11,9 +19,15 @@ from bossanova.internal.operations.common.formula_utils import (
11
19
  )
12
20
 
13
21
  __all__ = [
22
+ "CONTRAST_ALIASES",
23
+ "DEGREE_FUNCTIONS",
24
+ "ORDER_DEPENDENT",
25
+ "REF_FUNCTIONS",
26
+ "VALID_CONTRAST_FUNCTIONS",
14
27
  "build_ablated_formula",
15
28
  "filter_valid_rows",
16
29
  "get_factor_levels",
17
30
  "infer_factor_levels_from_data",
18
31
  "remove_predictor_from_formula",
32
+ "resolve_contrast_name",
19
33
  ]
@@ -0,0 +1,61 @@
1
+ """Contrast function registry for explore formulas.
2
+
3
+ Centralizes the vocabulary of contrast function names, aliases,
4
+ and parameter requirements. Used by the explore parser and contrast
5
+ dispatch logic to ensure consistent naming.
6
+ """
7
+
8
+ from __future__ import annotations
9
+
10
+ __all__ = [
11
+ "CONTRAST_ALIASES",
12
+ "DEGREE_FUNCTIONS",
13
+ "ORDER_DEPENDENT",
14
+ "REF_FUNCTIONS",
15
+ "VALID_CONTRAST_FUNCTIONS",
16
+ "resolve_contrast_name",
17
+ ]
18
+
19
+ # Canonical names and their aliases.
20
+ # Keys = alias, Values = canonical name.
21
+ CONTRAST_ALIASES: dict[str, str] = {
22
+ "pairwise": "pairwise",
23
+ "sequential": "sequential",
24
+ "poly": "poly",
25
+ "treatment": "treatment",
26
+ "dummy": "treatment",
27
+ "sum": "sum",
28
+ "deviation": "sum",
29
+ "helmert": "helmert",
30
+ }
31
+
32
+ # All valid contrast function names (canonical + aliases)
33
+ VALID_CONTRAST_FUNCTIONS: frozenset[str] = frozenset(CONTRAST_ALIASES.keys())
34
+
35
+ # Functions that accept a ``degree`` parameter
36
+ DEGREE_FUNCTIONS: frozenset[str] = frozenset({"poly"})
37
+
38
+ # Functions that require a ``ref`` parameter
39
+ REF_FUNCTIONS: frozenset[str] = frozenset({"treatment", "dummy"})
40
+
41
+ # Order-dependent functions (level ordering matters)
42
+ ORDER_DEPENDENT: frozenset[str] = frozenset({"sequential", "poly", "helmert"})
43
+
44
+
45
+ def resolve_contrast_name(name: str) -> str:
46
+ """Resolve a contrast function name to its canonical form.
47
+
48
+ Args:
49
+ name: Contrast function name (may be an alias).
50
+
51
+ Returns:
52
+ Canonical contrast name.
53
+
54
+ Raises:
55
+ ValueError: If name is not a recognized contrast function.
56
+ """
57
+ canonical = CONTRAST_ALIASES.get(name)
58
+ if canonical is None:
59
+ valid = ", ".join(sorted(VALID_CONTRAST_FUNCTIONS))
60
+ raise ValueError(f"Unknown contrast function '{name}'. Valid options: {valid}")
61
+ return canonical