boris-behav-obs 9.6.2__tar.gz → 9.6.3__tar.gz

{boris_behav_obs-9.6.2 → boris_behav_obs-9.6.3}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: boris-behav-obs
-Version: 9.6.2
+Version: 9.6.3
 Summary: BORIS - Behavioral Observation Research Interactive Software
 Author-email: Olivier Friard <olivier.friard@unito.it>
 License-Expression: GPL-3.0-only
@@ -19,7 +19,7 @@ Requires-Python: >=3.12
 Description-Content-Type: text/markdown
 License-File: LICENSE.TXT
 Requires-Dist: exifread>=3.0.0
-Requires-Dist: numpy>=1.26.4
+Requires-Dist: numpy==2.3.2
 Requires-Dist: matplotlib>=3.3.3
 Requires-Dist: pandas>=2.2.2
 Requires-Dist: tablib[cli,html,ods,pandas,xls,xlsx]>=3
@@ -49,7 +49,7 @@ You can not longer run BORIS natively on MacOS (since v.8). Some alternatives to
 
 It provides also some analysis tools like time budget and some plotting functions.
 
-The BORIS paper has more than [![BORIS citations counter](http://penelope.unito.it/friard/boris_scopus_citations.png) citations](https://www.boris.unito.it/citations) in peer-reviewed scientific publications.
+The BORIS paper has more than [![BORIS citations counter](https://penelope.unito.it/friard/boris_scopus_citations.png) citations](https://www.boris.unito.it/citations) in peer-reviewed scientific publications.
 
 
 
@@ -59,13 +59,17 @@ See the official [BORIS web site](https://www.boris.unito.it).
 [![Python web site](https://img.shields.io/badge/Made%20with-Python-1f425f.svg)](https://www.python.org)
 ![Python versions](https://img.shields.io/pypi/pyversions/boris-behav-obs)
 ![BORIS license](https://img.shields.io/pypi/l/boris-behav-obs)
+[![PyPI version](https://img.shields.io/pypi/v/boris-behav-obs.svg)](https://pypi.org/project/boris-behav-obs/)
+
 [![Number of downloads](https://static.pepy.tech/personalized-badge/boris-behav-obs?period=total&units=international_system&left_color=black&right_color=orange&left_text=Downloads)](https://pepy.tech/project/boris-behav-obs)
 ![commit-activity](https://img.shields.io/github/commit-activity/m/olivierfriard/BORIS)
-[![PyPI version](https://img.shields.io/pypi/v/boris-behav-obs.svg)](https://pypi.org/project/boris-behav-obs/)
-![BORIS scopus citations badge](http://penelope.unito.it/friard/boris_scopus_citations.svg)
+![GitHub last commit](https://img.shields.io/github/last-commit/olivierfriard/BORIS)
 
+![BORIS scopus citations badge](https://penelope.unito.it/friard/boris_scopus_citations.svg)
 
 
+![GitHub Repo stars](https://img.shields.io/github/stars/olivierfriard/BORIS?style=flat&label=Stars)
+[![Please Star](https://img.shields.io/badge/⭐-Star%20this%20repo-blue?style=flat-square)](https://github.com/olivierfriard/BORIS/stargazers)
 
 # Documentation
 
@@ -82,8 +86,7 @@ Some [video tutorials](https://www.boris.unito.it/video_tutorials/) are availabl
 # Bug reports and feature requests
 
 
-To search for bugs, report them or request a feature, please use the github tracker:
-https://github.com/olivierfriard/BORIS/issues
+To search for bugs, report them or request a feature, please use the [GitHub issues tracker](https://github.com/olivierfriard/BORIS/issues)
 
 
 
@@ -129,7 +132,7 @@ GNU General Public License for more details.
 
 Distributed with a [GPL v.3 license](LICENSE.TXT).
 
-Copyright (C) 2012-2024 Olivier Friard
+Copyright (C) 2012-2025 Olivier Friard
 
 
 

{boris_behav_obs-9.6.2 → boris_behav_obs-9.6.3}/README.md

@@ -11,7 +11,7 @@ You can not longer run BORIS natively on MacOS (since v.8). Some alternatives to
 
 It provides also some analysis tools like time budget and some plotting functions.
 
-The BORIS paper has more than [![BORIS citations counter](http://penelope.unito.it/friard/boris_scopus_citations.png) citations](https://www.boris.unito.it/citations) in peer-reviewed scientific publications.
+The BORIS paper has more than [![BORIS citations counter](https://penelope.unito.it/friard/boris_scopus_citations.png) citations](https://www.boris.unito.it/citations) in peer-reviewed scientific publications.
 
 
 
@@ -21,13 +21,17 @@ See the official [BORIS web site](https://www.boris.unito.it).
 [![Python web site](https://img.shields.io/badge/Made%20with-Python-1f425f.svg)](https://www.python.org)
 ![Python versions](https://img.shields.io/pypi/pyversions/boris-behav-obs)
 ![BORIS license](https://img.shields.io/pypi/l/boris-behav-obs)
+[![PyPI version](https://img.shields.io/pypi/v/boris-behav-obs.svg)](https://pypi.org/project/boris-behav-obs/)
+
 [![Number of downloads](https://static.pepy.tech/personalized-badge/boris-behav-obs?period=total&units=international_system&left_color=black&right_color=orange&left_text=Downloads)](https://pepy.tech/project/boris-behav-obs)
 ![commit-activity](https://img.shields.io/github/commit-activity/m/olivierfriard/BORIS)
-[![PyPI version](https://img.shields.io/pypi/v/boris-behav-obs.svg)](https://pypi.org/project/boris-behav-obs/)
-![BORIS scopus citations badge](http://penelope.unito.it/friard/boris_scopus_citations.svg)
+![GitHub last commit](https://img.shields.io/github/last-commit/olivierfriard/BORIS)
 
+![BORIS scopus citations badge](https://penelope.unito.it/friard/boris_scopus_citations.svg)
 
 
+![GitHub Repo stars](https://img.shields.io/github/stars/olivierfriard/BORIS?style=flat&label=Stars)
+[![Please Star](https://img.shields.io/badge/⭐-Star%20this%20repo-blue?style=flat-square)](https://github.com/olivierfriard/BORIS/stargazers)
 
 # Documentation
 
@@ -44,8 +48,7 @@ Some [video tutorials](https://www.boris.unito.it/video_tutorials/) are availabl
 # Bug reports and feature requests
 
 
-To search for bugs, report them or request a feature, please use the github tracker:
-https://github.com/olivierfriard/BORIS/issues
+To search for bugs, report them or request a feature, please use the [GitHub issues tracker](https://github.com/olivierfriard/BORIS/issues)
 
 
 
@@ -91,7 +94,7 @@ GNU General Public License for more details.
 
 Distributed with a [GPL v.3 license](LICENSE.TXT).
 
-Copyright (C) 2012-2024 Olivier Friard
+Copyright (C) 2012-2025 Olivier Friard
 
 
 

{boris_behav_obs-9.6.2 → boris_behav_obs-9.6.3}/boris/analysis_plugins/time_budget.py

@@ -26,10 +26,6 @@ def run(df: pd.DataFrame):
     - % of total subject observation duration
     """
 
-    print("running time budget plugin")
-
-    print(df)
-
     group_by = ["Subject", "Behavior"]
 
     dfs = [

{boris_behav_obs-9.6.2 → boris_behav_obs-9.6.3}/boris/behav_coding_map_creator.py

@@ -431,7 +431,6 @@ class BehaviorsMapCreatorWindow(QMainWindow):
                 self.selectedPolygon = None
                 self.selectedPolygonMemBrush = None
 
-            print(self.polygonsList2)
             idx = 0
             for areaCode, pg in self.polygonsList2:
                 if pg.contains(test):

{boris_behav_obs-9.6.2 → boris_behav_obs-9.6.3}/boris/coding_pad.py

@@ -261,8 +261,6 @@ def show_coding_pad(self):
         self.codingpad.setWindowFlags(Qt.WindowStaysOnTopHint)
         self.codingpad.sendEventSignal.connect(self.signal_from_widget)
 
-        print(f"{self.signal_from_widget=}")
-
         self.codingpad.clickSignal.connect(self.click_signal_from_coding_pad)
         self.codingpad.close_signal.connect(self.close_signal_from_coding_pad)
         self.codingpad.show()

{boris_behav_obs-9.6.2 → boris_behav_obs-9.6.3}/boris/core.py

@@ -205,7 +205,6 @@ class TableModel(QAbstractTableModel):
             if 0 <= row < self.rowCount():
                 column = index.column()
 
-                # print(self._data[:3])
                 if cfg.TW_EVENTS_FIELDS[self.observation_type][column] == "type":
                     return self._data[row][-1]
                 else:
@@ -2137,39 +2136,47 @@ class MainWindow(QMainWindow, Ui_MainWindow):
             set_and_update_pan_and_zoom(new_pan_x, new_pan_y, new_zoom)
 
         if cmd == "MBTN_LEFT_DBL":
-            print("left dbl")
+            logging.debug("MBTN_LEFT_DBL")
             # ZOOM IN x2
             do_zoom_in_clicked_coords(zoom_increment=1)
             return
         if cmd == "MBTN_RIGHT_DBL":
+            logging.debug("MBTN_RIGHT_DBL")
             # ZOOM OUT x2
             do_zoom_in_clicked_coords(zoom_increment=-1)
             return
         if cmd == "Ctrl+WHEEL_UP":
+            logging.debug("Ctrl+WHEEL_UP")
             # ZOOM IN (3 wheel steps to zoom X2)
             do_zoom_in_clicked_coords(zoom_increment=1.0 / 3.0)
             return
         if cmd == "Ctrl+WHEEL_DOWN":
+            logging.debug("Ctrl+WHEEL_DOWN")
             # ZOOM OUT (3 wheel steps to zoom X2)
             do_zoom_in_clicked_coords(zoom_increment=-1.0 / 3.0)
             return
         if cmd == "WHEEL_UP":
+            logging.debug("WHEEL_UP")
             # PAN UP (VIDEO MOVES DOWN)
             do_pan_in_clicked_coords(pan_x_increment=0, pan_y_increment=+0.01)
             return
         if cmd == "WHEEL_DOWN":
+            logging.debug("WHEEL_DOWN")
             # PAN DOWN (VIDEO MOVES UP)
             do_pan_in_clicked_coords(pan_x_increment=0, pan_y_increment=-0.01)
             return
         if cmd == "Shift+WHEEL_UP":
+            logging.debug("Shift+WHEEL_UP")
             # PAN LEFT (VIDEO MOVES TO THE RIGHT)
             do_pan_in_clicked_coords(pan_x_increment=+0.01, pan_y_increment=0)
             return
         if cmd == "Shift+WHEEL_DOWN":
+            logging.debug("Shift+WHEEL_DOWN")
             # PAN RIGHT (VIDEO MOVES TO THE LEFT)
             do_pan_in_clicked_coords(pan_x_increment=-0.01, pan_y_increment=0)
             return
         if cmd == "Shift+MBTN_LEFT":
+            logging.debug("Shift+MBTN_LEFT")
             # RESET PAN AND ZOOM TO DEFAULT
             set_and_update_pan_and_zoom(pan_x=0, pan_y=0, zoom=0)
             return
@@ -3745,21 +3752,10 @@ class MainWindow(QMainWindow, Ui_MainWindow):
 
             # calculate time for current media file in case of many queued media files
 
-            print(mediaFileIdx_s)
-            print(type(eventtime_s))
-            print(durations)
-
             eventtime_onmedia_s = round(eventtime_s - util.float2decimal(sum(durations[0:mediaFileIdx_s])), 3)
             eventtime_onmedia_e = round(eventtime_e - util.float2decimal(sum(durations[0:mediaFileIdx_e])), 3)
 
-            print(row_s, media_path_s, eventtime_s, eventtime_onmedia_s)
-            print(self.pj[cfg.OBSERVATIONS][self.observationId][cfg.EVENTS][row_s])
-
-            print(row_e, media_path_e, eventtime_e, eventtime_onmedia_e)
-            print(self.pj[cfg.OBSERVATIONS][self.observationId][cfg.EVENTS][row_e])
-
             if media_path_s != media_path_e:
-                print("events are located on 2 different media files")
                 return
 
             media_path = media_path_s
@@ -3770,7 +3766,6 @@ class MainWindow(QMainWindow, Ui_MainWindow):
             if "BORISEXTERNAL" in os.environ:
                 external_command_template = os.environ["BORISEXTERNAL"]
             else:
-                print("BORISEXTERNAL env var not defined")
                 return
 
             external_command = external_command_template.format(
@@ -3853,11 +3848,6 @@ class MainWindow(QMainWindow, Ui_MainWindow):
 
             time_, cumulative_time = self.get_obs_time()
 
-            """
-            print(time_)
-            print(cumulative_time)
-            """
-
             if self.pj[cfg.OBSERVATIONS][self.observationId].get(cfg.MEDIA_CREATION_DATE_AS_OFFSET, False):
                 write_event.write_event(self, event, time_)
             else:
@@ -5222,25 +5212,20 @@ class MainWindow(QMainWindow, Ui_MainWindow):
             if (not self.find_dialog.cbFindInSelectedEvents.isChecked()) or (
                 self.find_dialog.cbFindInSelectedEvents.isChecked() and event_idx in self.find_dialog.rowsToFind
             ):
-                print(f"{event=}")
-
                 # search only on filtered events
                 if event_idx not in self.tv_idx2events_idx:
                     continue
 
                 for idx in fields_list:
-                    print(f"{idx=}")
                     if (self.find_dialog.cb_case_sensitive.isChecked() and self.find_dialog.findText.text() in event[idx]) or (
                         not self.find_dialog.cb_case_sensitive.isChecked()
                         and self.find_dialog.findText.text().upper() in event[idx].upper()
                     ):
                         self.find_dialog.currentIdx = event_idx
 
-                        # self.twEvents.scrollToItem(self.twEvents.item(event_idx, 0))
                         index = self.tv_events.model().index(event_idx, 0)
                         self.tv_events.scrollTo(index, QAbstractItemView.EnsureVisible)
                         self.tv_events.selectRow(event_idx)
-                        # self.twEvents.selectRow(event_idx)
                         return
 
         if msg != "FIND_FROM_BEGINING":

{boris_behav_obs-9.6.2 → boris_behav_obs-9.6.3}/boris/db_functions.py

@@ -188,7 +188,7 @@ def load_aggregated_events_in_db(
         selected_behaviors = sorted([pj[cfg.ETHOGRAM][x][cfg.BEHAVIOR_CODE] for x in pj[cfg.ETHOGRAM]])
 
     # check if state events are paired
-    out = ""
+    out: str = ""
     for obs_id in selected_observations:
         r, msg = project_functions.check_state_events_obs(obs_id, pj[cfg.ETHOGRAM], pj[cfg.OBSERVATIONS][obs_id], cfg.HHMMSS)
         if not r:
@@ -212,11 +212,11 @@ def load_aggregated_events_in_db(
 
     db = sqlite3.connect(":memory:")
 
-    """
     # only for debugging
+    """
     import os
-    os.system("rm /tmp/ramdisk/aggreg.sqlite")
-    db = sqlite3.connect("/tmp/ramdisk/aggreg.sqlite", isolation_level=None)
+    os.system("rm /tmp/ramdisk/aggregated_events.sqlite")
+    db = sqlite3.connect("/tmp/ramdisk/aggregated_events.sqlite", isolation_level=None)
     """
 
     db.row_factory = sqlite3.Row

{boris_behav_obs-9.6.2 → boris_behav_obs-9.6.3}/boris/edit_event.py

@@ -128,8 +128,6 @@ class DlgEditEvent(QDialog, Ui_Form):
         set time to current media time
         """
 
-        print(f"{self.current_time=}")
-
         if self.observation_type in (cfg.LIVE, cfg.MEDIA):
             self.time_widget.set_time(dec(float(self.current_time)))
 
@@ -137,13 +135,6 @@ class DlgEditEvent(QDialog, Ui_Form):
             if self.exif_date_time is not None:
                 self.time_widget.set_time(dec(self.exif_date_time))
 
-    # def frame_idx_na(self):
-    #     """
-    #     set/unset frame index NA
-    #     """
-    #     self.lb_frame_idx.setEnabled(not self.cb_set_frame_idx_na.isChecked())
-    #     self.sb_frame_idx.setEnabled(not self.cb_set_frame_idx_na.isChecked())
-
     def time_na(self):
         """
         set/unset time to NA

{boris_behav_obs-9.6.2 → boris_behav_obs-9.6.3}/boris/export_events.py

@@ -702,7 +702,7 @@ def export_events_as_textgrid(self) -> None:
     if not export_dir:
         return
 
-    mem_command = ""
+    mem_command: str = ""
 
     # see https://www.fon.hum.uva.nl/praat/manual/TextGrid_file_formats.html
 
@@ -795,6 +795,7 @@ def export_events_as_textgrid(self) -> None:
             max_time = float(obs_interval[1]) + offset if obs_interval[1] != 0 else float(max_media_duration)
 
         # delete events outside time interval
+
         cursor.execute(
             "DELETE FROM aggregated_events WHERE observation = ? AND (start < ? AND stop < ?) OR (start > ? AND stop > ?)",
             (
@@ -838,38 +839,30 @@ def export_events_as_textgrid(self) -> None:
 
         next_obs: bool = False
 
-        """
-        total_media_duration = round(
-            observation_operations.observation_total_length(self.pj[cfg.OBSERVATIONS][obs_id]), 3
-        )
-        """
-
+        # number of items for size parameter
         cursor.execute(
             (
-                "SELECT COUNT(DISTINCT subject) FROM aggregated_events "
-                "WHERE observation = ? AND subject IN ({}) AND type = 'STATE' ".format(
-                    ",".join(["?"] * len(parameters[cfg.SELECTED_SUBJECTS]))
-                )
+                "SELECT COUNT(*) FROM (SELECT * FROM aggregated_events "
+                f"WHERE observation = ? AND subject IN ({','.join(['?'] * len(parameters[cfg.SELECTED_SUBJECTS]))}) GROUP BY subject, behavior) "
             ),
             [obs_id] + parameters[cfg.SELECTED_SUBJECTS],
         )
 
-        subjectsNum = int(cursor.fetchone()[0])
-        """subjectsMin = min_time"""
-        subjectsMax = max_time
+        subjects_num = int(cursor.fetchone()[0])
+        subjects_max = max_time
 
         out = (
             'File type = "ooTextFile"\n'
             'Object class = "TextGrid"\n'
             "\n"
             f"xmin = 0.0\n"
-            f"xmax = {subjectsMax}\n"
+            f"xmax = {subjects_max}\n"
             "tiers? <exists>\n"
-            f"size = {subjectsNum}\n"
+            f"size = {subjects_num}\n"
             "item []:\n"
         )
 
-        subject_index = 0
+        subject_index: int = 0
         for subject in parameters[cfg.SELECTED_SUBJECTS]:
             if subject not in [
                 x[cfg.EVENT_SUBJECT_FIELD_IDX] if x[cfg.EVENT_SUBJECT_FIELD_IDX] else cfg.NO_FOCAL_SUBJECT
@@ -877,7 +870,8 @@ def export_events_as_textgrid(self) -> None:
             ]:
                 continue
 
-            intervalsMin, intervalsMax = min_time, max_time
+            intervalsMin = min_time
+            intervalsMax = max_time
 
             # STATE events
             cursor.execute(
@@ -892,68 +886,66 @@ def export_events_as_textgrid(self) -> None:
                 {"start": util.float2decimal(r["start"]), "stop": util.float2decimal(r["stop"]), "code": r["behavior"]}
                 for r in cursor.fetchall()
             ]
-            if not rows:
-                continue
+            if rows:
+                out += interval_subject_header
 
-            out += interval_subject_header
+                count = 0
 
-            count = 0
-
-            # check if 1st behavior starts at the beginning
-            if rows[0]["start"] > 0:
-                count += 1
-                out += interval_template.format(count=count, name="null", xmin=0.0, xmax=rows[0]["start"])
-
-            for idx, row in enumerate(rows):
-                # check if events are overlapping
-                if (idx + 1 < len(rows)) and (row["stop"] > rows[idx + 1]["start"]):
-                    self.results.ptText.appendHtml(
-                        (
-                            f"The events overlap for subject <b>{subject}</b> in the observation <b>{obs_id}</b>. "
-                            "It is not possible to create the Praat TextGrid file."
+                # check if 1st behavior starts at the beginning
+                if rows[0]["start"] > 0:
+                    count += 1
+                    out += interval_template.format(count=count, name="null", xmin=0.0, xmax=rows[0]["start"])
+
+                for idx, row in enumerate(rows):
+                    # check if events are overlapping
+                    if (idx + 1 < len(rows)) and (row["stop"] > rows[idx + 1]["start"]):
+                        self.results.ptText.appendHtml(
+                            (
+                                f"The events overlap for subject <b>{subject}</b> in the observation <b>{obs_id}</b>. "
+                                "It is not possible to create the Praat TextGrid file."
+                            )
                         )
-                    )
-                    QApplication.processEvents()
+                        QApplication.processEvents()
 
-                    next_obs = True
-                    break
+                        next_obs = True
+                        break
 
-                count += 1
+                    count += 1
 
-                if (idx + 1 < len(rows)) and (rows[idx + 1]["start"] - dec("0.001") <= row["stop"] < rows[idx + 1]["start"]):
-                    xmax = rows[idx + 1]["start"]
-                else:
-                    xmax = row["stop"]
+                    if (idx + 1 < len(rows)) and (rows[idx + 1]["start"] - dec("0.001") <= row["stop"] < rows[idx + 1]["start"]):
+                        xmax = rows[idx + 1]["start"]
+                    else:
+                        xmax = row["stop"]
+
+                    out += interval_template.format(count=count, name=row["code"], xmin=row["start"], xmax=xmax)
+
+                    # check if no behavior
+                    if (idx + 1 < len(rows)) and (row["stop"] < rows[idx + 1]["start"] - dec("0.001")):
+                        count += 1
+                        out += interval_template.format(
+                            count=count,
+                            name="null",
+                            xmin=row["stop"],
+                            xmax=rows[idx + 1]["start"],
+                        )
 
-                out += interval_template.format(count=count, name=row["code"], xmin=row["start"], xmax=xmax)
+                if next_obs:
+                    break
 
-                # check if no behavior
-                if (idx + 1 < len(rows)) and (row["stop"] < rows[idx + 1]["start"] - dec("0.001")):
+                # check if last event ends at the end of media file
+                if rows[-1]["stop"] < max_time:
                     count += 1
-                    out += interval_template.format(
-                        count=count,
-                        name="null",
-                        xmin=row["stop"],
-                        xmax=rows[idx + 1]["start"],
-                    )
-
-            if next_obs:
-                break
-
-            # check if last event ends at the end of media file
-            if rows[-1]["stop"] < max_time:
-                count += 1
-                out += interval_template.format(count=count, name="null", xmin=rows[-1]["stop"], xmax=max_time)
-
-            # add info
-            subject_index += 1
-            out = out.format(
-                subject_index=subject_index,
-                subject=subject,
-                intervalsSize=count,
-                intervalsMin=intervalsMin,
-                intervalsMax=intervalsMax,
-            )
+                    out += interval_template.format(count=count, name="null", xmin=rows[-1]["stop"], xmax=max_time)
+
+                # add info
+                subject_index += 1
+                out = out.format(
+                    subject_index=subject_index,
+                    subject=subject,
+                    intervalsSize=count,
+                    intervalsMin=intervalsMin,
+                    intervalsMax=intervalsMax,
+                )
 
             # POINT events
             cursor.execute(

{boris_behav_obs-9.6.2 → boris_behav_obs-9.6.3}/boris/gui_utilities.py

@@ -66,7 +66,6 @@ def restore_geometry(widget: QWidget, widget_name: str, default_width_height):
         ini_file_path = pl.Path.home() / pl.Path(".boris")
         if ini_file_path.is_file():
             settings = QSettings(str(ini_file_path), QSettings.IniFormat)
-            print(settings.value(f"{widget_name} geometry"))
             widget.restoreGeometry(settings.value(f"{widget_name} geometry"))
             logging.debug(f"geometry restored for {widget_name}  {settings.value(f'{widget_name} geometry')}")
         else:

{boris_behav_obs-9.6.2 → boris_behav_obs-9.6.3}/boris/modifier_coding_map_creator.py

@@ -907,8 +907,6 @@ class ModifiersMapCreatorWindow(QMainWindow):
         """
         self.area_list.clear()
 
-        print(f"{self.polygonsList2=}")
-
         for modifier_name in sorted(self.polygonsList2.keys()):
             self.area_list.addItem(modifier_name)
 

{boris_behav_obs-9.6.2 → boris_behav_obs-9.6.3}/boris/observation_operations.py

@@ -1301,10 +1301,8 @@ def init_mpv(self):
 
     logging.debug("function: init_mpv")
 
-    """
-    print(f"{self.winId()=}")
-    print(f"{str(int(self.winId()))=}")
-    """
+    # print(f"{self.winId()=}")
+    # print(f"{str(int(self.winId()))=}")
 
     subprocess.Popen(
         [

{boris_behav_obs-9.6.2 → boris_behav_obs-9.6.3}/boris/param_panel.py

@@ -96,12 +96,8 @@ class Param_panel(QDialog, Ui_Dialog):
                 # Set start_time and end_time widgets values even if it is not shown with
                 # more than 1 observation as some analyses might use it (eg: advanced event filtering)
 
-                print(f"{self.end_interval=}")
-
                 end_interval = self.end_interval if self.end_interval != 0 else self.media_duration
 
-                print(f"{end_interval=}")
-
                 self.start_time.set_time(self.start_interval)
                 self.end_time.set_time(end_interval)
                 self.frm_time_interval.setEnabled(False)

{boris_behav_obs-9.6.2 → boris_behav_obs-9.6.3}/boris/plot_spectrogram_rt.py

@@ -129,7 +129,8 @@ class Plot_spectrogram_RT(QWidget):
         try:
             wav = wave.open(wav_file, "r")
             frames = wav.readframes(-1)
-            sound_info = np.fromstring(frames, dtype=np.int16)
+            # sound_info = np.fromstring(frames, dtype=np.int16)
+            sound_info = np.frombuffer(frames, dtype=np.int16)
             frame_rate = wav.getframerate()
             wav.close()
             return sound_info, frame_rate

{boris_behav_obs-9.6.2 → boris_behav_obs-9.6.3}/boris/plot_waveform_rt.py

@@ -109,7 +109,8 @@ class Plot_waveform_RT(QWidget):
         try:
             wav = wave.open(wav_file, "r")
             frames = wav.readframes(-1)
-            signal = np.fromstring(frames, dtype=np.int16)
+            # signal = np.fromstring(frames, dtype=np.int16)
+            signal = np.frombuffer(frames, dtype=np.int16)
             frame_rate = wav.getframerate()
             wav.close()
             return signal, frame_rate

{boris_behav_obs-9.6.2 → boris_behav_obs-9.6.3}/boris/time_budget_functions.py

@@ -1021,15 +1021,6 @@ def time_budget_analysis(
                         continue
 
                     if len(rows) % 2:  # unpaired events
-                        """
-                        print()
-                        print(f"{subject=}")
-                        print(f"{behavior=}")
-                        print()
-                        for row in rows:
-                            print(f"{row['observation']=}  {row['occurence']=}")
-                        print()
-                        """
                         out_cat.append(
                             {
                                 "subject": subject,

{boris_behav_obs-9.6.2 → boris_behav_obs-9.6.3}/boris/version.py

@@ -20,5 +20,5 @@ This file is part of BORIS.
 
 """
 
-__version__ = "9.6.2"
-__version_date__ = "2025-08-05"
+__version__ = "9.6.3"
+__version_date__ = "2025-08-26"

{boris_behav_obs-9.6.2 → boris_behav_obs-9.6.3}/boris/video_equalizer.py

@@ -60,8 +60,6 @@ class Video_equalizer(QDialog, Ui_Equalizer):
         if n_player not in self.equalizer:
             return
 
-        print(self.equalizer)
-
         self.hs_brightness.setValue(self.equalizer[n_player]["hs_brightness"])
         self.lb_brightness.setText(str(self.equalizer[n_player]["hs_brightness"]))
 

{boris_behav_obs-9.6.2 → boris_behav_obs-9.6.3}/boris/view_df.py

@@ -49,8 +49,6 @@ class View_df(QWidget, Ui_Form):
         self.lb_plugin_info.setText(f"{plugin_name} v. {plugin_version}")
         self.setWindowTitle(f"{plugin_name} v. {plugin_version}")
 
-        # print(f"{self.df=}")
-
         self.pb_close.clicked.connect(self.close)
         self.pb_save.clicked.connect(self.save)
 

{boris_behav_obs-9.6.2 → boris_behav_obs-9.6.3}/boris/write_event.py

@@ -68,8 +68,6 @@ def write_event(self, event: dict, mem_time: dec) -> int:
             )
             return 1
 
-        print(f"{mem_time=}")
-
         if mem_time < self.pj[cfg.OBSERVATIONS][self.observationId].get(cfg.OBSERVATION_TIME_INTERVAL, [0, 0])[0]:
             _ = dialog.MessageDialog(
                 cfg.programName,
@@ -104,12 +102,6 @@ def write_event(self, event: dict, mem_time: dec) -> int:
 
                 # add media creation date/time
 
-                """
-                print(f"{media_file_name=}")
-                print(f"{mem_time=}")
-                """
-                print(f"{self.pj[cfg.OBSERVATIONS][self.observationId][cfg.MEDIA_INFO]=}")
-
                 mem_time += dec(
                     self.pj[cfg.OBSERVATIONS][self.observationId][cfg.MEDIA_INFO][cfg.MEDIA_CREATION_TIME][media_file_name_posix]
                 )
@@ -413,7 +405,6 @@ def write_event(self, event: dict, mem_time: dec) -> int:
                         r = modifiers_selector.exec_()
                         if r:
                             selected_modifiers = modifiers_selector.get_modifiers()
-                            # print(f"{selected_modifiers=}")
 
                             behavior_to_stop_modifier_str: str = ""
                             for idx in util.sorted_keys(selected_modifiers):

{boris_behav_obs-9.6.2 → boris_behav_obs-9.6.3}/boris_behav_obs.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: boris-behav-obs
-Version: 9.6.2
+Version: 9.6.3
 Summary: BORIS - Behavioral Observation Research Interactive Software
 Author-email: Olivier Friard <olivier.friard@unito.it>
 License-Expression: GPL-3.0-only
@@ -19,7 +19,7 @@ Requires-Python: >=3.12
 Description-Content-Type: text/markdown
 License-File: LICENSE.TXT
 Requires-Dist: exifread>=3.0.0
-Requires-Dist: numpy>=1.26.4
+Requires-Dist: numpy==2.3.2
 Requires-Dist: matplotlib>=3.3.3
 Requires-Dist: pandas>=2.2.2
 Requires-Dist: tablib[cli,html,ods,pandas,xls,xlsx]>=3
@@ -49,7 +49,7 @@ You can not longer run BORIS natively on MacOS (since v.8). Some alternatives to
 
 It provides also some analysis tools like time budget and some plotting functions.
 
-The BORIS paper has more than [![BORIS citations counter](http://penelope.unito.it/friard/boris_scopus_citations.png) citations](https://www.boris.unito.it/citations) in peer-reviewed scientific publications.
+The BORIS paper has more than [![BORIS citations counter](https://penelope.unito.it/friard/boris_scopus_citations.png) citations](https://www.boris.unito.it/citations) in peer-reviewed scientific publications.
 
 
 
@@ -59,13 +59,17 @@ See the official [BORIS web site](https://www.boris.unito.it).
 [![Python web site](https://img.shields.io/badge/Made%20with-Python-1f425f.svg)](https://www.python.org)
 ![Python versions](https://img.shields.io/pypi/pyversions/boris-behav-obs)
 ![BORIS license](https://img.shields.io/pypi/l/boris-behav-obs)
+[![PyPI version](https://img.shields.io/pypi/v/boris-behav-obs.svg)](https://pypi.org/project/boris-behav-obs/)
+
 [![Number of downloads](https://static.pepy.tech/personalized-badge/boris-behav-obs?period=total&units=international_system&left_color=black&right_color=orange&left_text=Downloads)](https://pepy.tech/project/boris-behav-obs)
 ![commit-activity](https://img.shields.io/github/commit-activity/m/olivierfriard/BORIS)
-[![PyPI version](https://img.shields.io/pypi/v/boris-behav-obs.svg)](https://pypi.org/project/boris-behav-obs/)
-![BORIS scopus citations badge](http://penelope.unito.it/friard/boris_scopus_citations.svg)
+![GitHub last commit](https://img.shields.io/github/last-commit/olivierfriard/BORIS)
 
+![BORIS scopus citations badge](https://penelope.unito.it/friard/boris_scopus_citations.svg)
 
 
+![GitHub Repo stars](https://img.shields.io/github/stars/olivierfriard/BORIS?style=flat&label=Stars)
+[![Please Star](https://img.shields.io/badge/⭐-Star%20this%20repo-blue?style=flat-square)](https://github.com/olivierfriard/BORIS/stargazers)
 
 # Documentation
 
@@ -82,8 +86,7 @@ Some [video tutorials](https://www.boris.unito.it/video_tutorials/) are availabl
 # Bug reports and feature requests
 
 
-To search for bugs, report them or request a feature, please use the github tracker:
-https://github.com/olivierfriard/BORIS/issues
+To search for bugs, report them or request a feature, please use the [GitHub issues tracker](https://github.com/olivierfriard/BORIS/issues)
 
 
 
@@ -129,7 +132,7 @@ GNU General Public License for more details.
 
 Distributed with a [GPL v.3 license](LICENSE.TXT).
 
-Copyright (C) 2012-2024 Olivier Friard
+Copyright (C) 2012-2025 Olivier Friard
 
 
 

{boris_behav_obs-9.6.2 → boris_behav_obs-9.6.3}/boris_behav_obs.egg-info/requires.txt

@@ -1,5 +1,5 @@
 exifread>=3.0.0
-numpy>=1.26.4
+numpy==2.3.2
 matplotlib>=3.3.3
 pandas>=2.2.2
 tablib[cli,html,ods,pandas,xls,xlsx]>=3

{boris_behav_obs-9.6.2 → boris_behav_obs-9.6.3}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "boris-behav-obs"
-version = "9.6.2"
+version = "9.6.3"
 description = "BORIS - Behavioral Observation Research Interactive Software"
 authors = [{ name="Olivier Friard", email="olivier.friard@unito.it" }]
 readme = "README.md"
@@ -16,7 +16,7 @@ classifiers=[
     ]
 dependencies = [
     "exifread>=3.0.0",
-    "numpy>=1.26.4",
+    "numpy==2.3.2",
     "matplotlib>=3.3.3",
     "pandas>=2.2.2",
     "tablib[html, ods, xls, xlsx, pandas, cli]>=3",