boris-behav-obs 9.2__tar.gz → 9.2.3__tar.gz

boris_behav_obs-9.2.3/PKG-INFO

@@ -0,0 +1,33 @@
+Metadata-Version: 2.4
+Name: boris-behav-obs
+Version: 9.2.3
+Summary: BORIS - Behavioral Observation Research Interactive Software
+Author-email: Olivier Friard <olivier.friard@unito.it>
+License-Expression: GPL-3.0-only
+Project-URL: Homepage, http://www.boris.unito.it
+Project-URL: Documentation, https://boris.readthedocs.io/en/latest/
+Project-URL: Change_log, https://github.com/olivierfriard/BORIS/wiki/BORIS-change-log-v.8
+Project-URL: Source_code, https://github.com/olivierfriard/BORIS
+Project-URL: Issues, https://github.com/olivierfriard/BORIS/issues
+Classifier: Topic :: Scientific/Engineering
+Classifier: Intended Audience :: Science/Research
+Classifier: Intended Audience :: Education
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Operating System :: OS Independent
+Classifier: Topic :: Scientific/Engineering
+Requires-Python: >=3.12
+Description-Content-Type: text/x-rst
+License-File: LICENSE.TXT
+Requires-Dist: exifread>=3.0.0
+Requires-Dist: numpy>=1.26.4
+Requires-Dist: matplotlib>=3.3.3
+Requires-Dist: pandas>=2.2.2
+Requires-Dist: tablib[cli,html,ods,pandas,xls,xlsx]>=3
+Requires-Dist: pyreadr
+Requires-Dist: pyside6==6.8.0.2
+Requires-Dist: hachoir>=3.3.0
+Provides-Extra: dev
+Requires-Dist: ruff; extra == "dev"
+Requires-Dist: pytest; extra == "dev"
+Requires-Dist: pytest-cov; extra == "dev"
+Dynamic: license-file

{boris_behav_obs-9.2 → boris_behav_obs-9.2.3}/boris/advanced_event_filtering.py

@@ -359,8 +359,10 @@ def event_filtering(self):
         selected_observations,
         start_coding=start_coding,
         end_coding=end_coding,
-        start_interval=start_interval,
-        end_interval=end_interval,
+        # start_interval=start_interval,
+        # end_interval=end_interval,
+        start_interval=None,
+        end_interval=None,
         maxTime=max_media_duration_all_obs,
         show_include_modifiers=False,
         show_exclude_non_coded_behaviors=False,
@@ -368,7 +370,7 @@ def event_filtering(self):
         n_observations=len(selected_observations),
     )
 
-    if parameters == {}:
+    if not parameters:
         return
 
     if not parameters[cfg.SELECTED_SUBJECTS] or not parameters[cfg.SELECTED_BEHAVIORS]:

{boris_behav_obs-9.2 → boris_behav_obs-9.2.3}/boris/behavior_binary_table.py

@@ -80,12 +80,12 @@ def create_behavior_binary_table(pj: dict, selected_observations: list, paramete
                 end_time = dec(max_obs_length)
 
         if parameters_obs["time"] == cfg.TIME_OBS_INTERVAL:
-            obs_interval = pj[cfg.OBSERVATIONS][obs_id][cfg.OBSERVATION_TIME_INTERVAL]
+            obs_interval = pj[cfg.OBSERVATIONS][obs_id].get(cfg.OBSERVATION_TIME_INTERVAL, [0, 0])
             offset = pj[cfg.OBSERVATIONS][obs_id][cfg.TIME_OFFSET]
             start_time = dec(obs_interval[0]) + offset
             # Use max observation length for end time if no interval is defined (=0)
             max_obs_length, _ = observation_operations.observation_length(pj, [obs_id])
-            end_time = dec(obs_interval[1]) + offset if obs_interval[1] != 0 else dec(max_obs_length)
+            end_time = dec(obs_interval[1]) + offset if obs_interval[1] not in (0, None) else dec(max_obs_length)
 
         if obs_id not in results_df:
             results_df[obs_id] = {}
@@ -166,8 +166,8 @@ def behavior_binary_table(self):
         None,
         cfg.programName,
         (
-            "Depending of the length of your observations "
-            "the execution of this function may be very long.<br>"
+            "Depending on the length of yours observations "
+            "the execution of this function may take a long time.<br>"
             "The program interface may freeze, be patient. <br>"
         ),
     )
@@ -224,7 +224,7 @@ def behavior_binary_table(self):
         by_category=False,
         n_observations=len(selected_observations),
     )
-    if parameters == {}:
+    if not parameters:
         return
     if not parameters[cfg.SELECTED_SUBJECTS] or not parameters[cfg.SELECTED_BEHAVIORS]:
         QMessageBox.warning(None, cfg.programName, "Select subject(s) and behavior(s) to analyze")

{boris_behav_obs-9.2 → boris_behav_obs-9.2.3}/boris/connections.py

@@ -271,7 +271,9 @@ def connections(self):
     self.actionViewBehavior.triggered.connect(self.view_behavior)
     self.twEthogram.addAction(self.actionViewBehavior)
 
-    self.actionFilterBehaviors.triggered.connect(lambda: self.filter_behaviors(table=cfg.ETHOGRAM))
+    self.actionFilterBehaviors.triggered.connect(
+        lambda: self.filter_behaviors(table=cfg.ETHOGRAM, behavior_type=cfg.STATE_EVENT_TYPES + cfg.POINT_EVENT_TYPES)
+    )
     self.twEthogram.addAction(self.actionFilterBehaviors)
 
     self.actionShowAllBehaviors.triggered.connect(self.show_all_behaviors)

{boris_behav_obs-9.2 → boris_behav_obs-9.2.3}/boris/cooccurence.py

@@ -106,8 +106,10 @@ def get_cooccurence(self):
             selected_observations,
             start_coding=start_coding,
             end_coding=end_coding,
-            start_interval=start_interval,
-            end_interval=end_interval,
+            # start_interval=start_interval,
+            # end_interval=end_interval,
+            start_interval=None,
+            end_interval=None,
             maxTime=max_media_duration_all_obs,
             n_observations=len(selected_observations),
             show_include_modifiers=False,

{boris_behav_obs-9.2 → boris_behav_obs-9.2.3}/boris/core.py

@@ -794,10 +794,10 @@ class MainWindow(QMainWindow, Ui_MainWindow):
 
     def filter_behaviors(
         self,
-        title="Select the behaviors to show in the ethogram table",
-        text="Behaviors to show in ethogram list",
-        table=cfg.ETHOGRAM,
-        behavior_type=cfg.STATE_EVENT_TYPES,
+        title: str = "Select the behaviors to show in the ethogram table",
+        text: str = "Behaviors to show in ethogram list",
+        table: str = cfg.ETHOGRAM,
+        behavior_type: list = cfg.STATE_EVENT_TYPES,
     ) -> Tuple[bool, list]:
         """
         allow user to:
@@ -809,6 +809,7 @@ class MainWindow(QMainWindow, Ui_MainWindow):
             title (str): title of dialog box
             text (str): text of dialog box
             table (str): table where behaviors will be filtered
+            behavior_type
 
         Returns:
             (None if table = ETHOGRAM)
@@ -858,21 +859,22 @@ class MainWindow(QMainWindow, Ui_MainWindow):
             categories = ["###no category###"]
 
         for category in categories:
-            if category != "###no category###":
-                if category == "":
-                    paramPanelWindow.item = QListWidgetItem("No category")
-                    paramPanelWindow.item.setData(34, "No category")
-                else:
-                    paramPanelWindow.item = QListWidgetItem(category)
-                    paramPanelWindow.item.setData(34, category)
+            if category == "###no category###":
+                continue
+            if category == "":
+                paramPanelWindow.item = QListWidgetItem("No category")
+                paramPanelWindow.item.setData(34, "No category")
+            else:
+                paramPanelWindow.item = QListWidgetItem(category)
+                paramPanelWindow.item.setData(34, category)
 
-                font = QFont()
-                font.setBold(True)
-                paramPanelWindow.item.setFont(font)
-                paramPanelWindow.item.setData(33, "category")
-                paramPanelWindow.item.setData(35, False)
+            font = QFont()
+            font.setBold(True)
+            paramPanelWindow.item.setFont(font)
+            paramPanelWindow.item.setData(33, "category")
+            paramPanelWindow.item.setData(35, False)
 
-                paramPanelWindow.lwBehaviors.addItem(paramPanelWindow.item)
+            paramPanelWindow.lwBehaviors.addItem(paramPanelWindow.item)
 
             # check if behavior type must be shown
             for behavior in [self.pj[cfg.ETHOGRAM][x][cfg.BEHAVIOR_CODE] for x in util.sorted_keys(self.pj[cfg.ETHOGRAM])]:
@@ -3631,6 +3633,17 @@ class MainWindow(QMainWindow, Ui_MainWindow):
         else:
             current_time = self.getLaps()
 
+        # check if observation time interval
+        if self.pj[cfg.OBSERVATIONS][self.observationId].get(cfg.OBSERVATION_TIME_INTERVAL, [0, 0])[1]:
+            # check if current time outside of interval
+            if current_time >= self.pj[cfg.OBSERVATIONS][self.observationId].get(cfg.OBSERVATION_TIME_INTERVAL, [None, None])[1]:
+                self.beep("beep")
+                self.liveTimer.stop()
+                self.liveObservationStarted = False
+                # set current time to end of observation interval
+                current_time = dec(self.pj[cfg.OBSERVATIONS][self.observationId].get(cfg.OBSERVATION_TIME_INTERVAL, [None, None])[1])
+                self.pb_live_obs.setText("Live observation finished")
+
         self.lb_current_media_time.setText(util.convertTime(self.timeFormat, current_time))
 
         # extract State events
@@ -3660,14 +3673,6 @@ class MainWindow(QMainWindow, Ui_MainWindow):
                 self.liveTimer.stop()
                 self.pb_live_obs.setText("Live observation stopped (scan sampling)")
 
-        # observation time interval
-        if self.pj[cfg.OBSERVATIONS][self.observationId].get(cfg.OBSERVATION_TIME_INTERVAL, [0, 0])[1]:
-            if current_time >= self.pj[cfg.OBSERVATIONS][self.observationId].get(cfg.OBSERVATION_TIME_INTERVAL, [0, 0])[1]:
-                self.beep("beep")
-                self.liveTimer.stop()
-                self.liveObservationStarted = False
-                self.pb_live_obs.setText("Live observation finished")
-
     def start_live_observation(self):
         """
         activate the live observation mode
@@ -3769,8 +3774,10 @@ class MainWindow(QMainWindow, Ui_MainWindow):
             selected_observations,
             start_coding=start_coding,
             end_coding=end_coding,
-            start_interval=start_interval,
-            end_interval=end_interval,
+            # start_interval=start_interval,
+            # end_interval=end_interval,
+            start_interval=None,
+            end_interval=None,
             maxTime=max_media_duration_all_obs,
             show_include_modifiers=False,
             show_exclude_non_coded_behaviors=False,
@@ -5747,10 +5754,7 @@ class MainWindow(QMainWindow, Ui_MainWindow):
         if self.playerType == cfg.MEDIA:
             self.pause_video()
 
-            if cfg.OBSERVATION_TIME_INTERVAL in self.pj[cfg.OBSERVATIONS][self.observationId]:
-                self.seek_mediaplayer(int(self.pj[cfg.OBSERVATIONS][self.observationId][cfg.OBSERVATION_TIME_INTERVAL][0]))
-            else:
-                self.seek_mediaplayer(0)
+            self.seek_mediaplayer(int(self.pj[cfg.OBSERVATIONS][self.observationId].get(cfg.OBSERVATION_TIME_INTERVAL, [0, 0])[0]))
 
             self.update_visualizations()
 

{boris_behav_obs-9.2 → boris_behav_obs-9.2.3}/boris/export_events.py

@@ -76,7 +76,7 @@ def export_events_as_behavioral_sequences(self, separated_subjects=False, timed=
     else:
         max_media_duration_all_obs = None
         start_coding, end_coding = dec("NaN"), dec("NaN")
-        start_interval, end_interval = dec("NaN"), dec("NaN")
+        start_interval, end_interval = None, None
 
     parameters = select_subj_behav.choose_obs_subj_behav_category(
         self,
@@ -169,7 +169,7 @@ def export_tabular_events(self, mode: str = "tabular") -> None:
     else:
         max_media_duration_all_obs = None
         start_coding, end_coding = dec("NaN"), dec("NaN")
-        start_interval, end_interval = dec("NaN"), dec("NaN")
+        start_interval, end_interval = None, None
 
     parameters = select_subj_behav.choose_obs_subj_behav_category(
         self,
@@ -373,7 +373,7 @@ def export_aggregated_events(self):
     else:
         max_media_duration_all_obs = None
         start_coding, end_coding = dec("NaN"), dec("NaN")
-        start_interval, end_interval = dec("NaN"), dec("NaN")
+        start_interval, end_interval = None, None
 
     parameters = select_subj_behav.choose_obs_subj_behav_category(
         self,
@@ -681,8 +681,10 @@ def export_events_as_textgrid(self) -> None:
         selected_observations,
         start_coding=start_coding,
         end_coding=end_coding,
-        start_interval=start_interval,
-        end_interval=end_interval,
+        # start_interval=start_interval,
+        # end_interval=end_interval,
+        start_interval=None,
+        end_interval=None,
         show_include_modifiers=False,
         show_exclude_non_coded_behaviors=False,
         maxTime=max_obs_length,
@@ -786,7 +788,7 @@ def export_events_as_textgrid(self) -> None:
 
         if parameters["time"] == cfg.TIME_OBS_INTERVAL:
             max_media_duration, _ = observation_operations.media_duration(self.pj[cfg.OBSERVATIONS], [obs_id])
-            obs_interval = self.pj[cfg.OBSERVATIONS][obs_id][cfg.OBSERVATION_TIME_INTERVAL]
+            obs_interval = self.pj[cfg.OBSERVATIONS][obs_id].get(cfg.OBSERVATION_TIME_INTERVAL, [0, 0])
             offset = float(self.pj[cfg.OBSERVATIONS][obs_id][cfg.TIME_OFFSET])
             min_time = float(obs_interval[0]) + offset
             # Use max media duration for max time if no interval is defined (=0)

{boris_behav_obs-9.2 → boris_behav_obs-9.2.3}/boris/export_observation.py

@@ -121,7 +121,10 @@ def export_events_jwatcher(
             except Exception:
                 # coded behavior not defined in ethogram
                 continue
-            if [ethogram[k][cfg.TYPE] for k in ethogram if ethogram[k][cfg.BEHAVIOR_CODE] == behav_code] == [cfg.STATE_EVENT]:
+            if [ethogram[k][cfg.TYPE] for k in ethogram if ethogram[k][cfg.BEHAVIOR_CODE] == behav_code] in [
+                [cfg.STATE_EVENT],
+                [cfg.STATE_EVENT_WITH_CODING_MAP],
+            ]:
                 if behav_code in mem_number_of_state_events:
                     mem_number_of_state_events[behav_code] += 1
                 else:

{boris_behav_obs-9.2 → boris_behav_obs-9.2.3}/boris/gui_utilities.py

@@ -31,32 +31,40 @@ def save_geometry(widget: QWidget, widget_name: str):
     save window geometry in ini file
     """
 
-    try:
-        ini_file_path = pl.Path.home() / pl.Path(".boris")
-        if ini_file_path.is_file():
+    ini_file_path = pl.Path.home() / pl.Path(".boris")
+    if ini_file_path.is_file():
+        try:
             settings = QSettings(str(ini_file_path), QSettings.IniFormat)
             settings.setValue(f"{widget_name} geometry", widget.saveGeometry())
-    except Exception:
-        logging.warning(f"error during saving {widget_name} geometry")
+        except Exception:
+            logging.warning(f"error during saving {widget_name} geometry")
 
 
-def restore_geometry(widget: QWidget, widget_name: str, default_geometry):
+def restore_geometry(widget: QWidget, widget_name: str, default_width_height):
     """
     restore window geometry in ini file
     """
+    def default_resize(widget, default_width_height):
+        if default_width_height != (0, 0):
+            try:
+                widget.resize(default_width_height[0], default_width_height[1])
+            except Exception:
+                logging.warning("Error during restoring default")
+
 
+    logging.debug(f'restore geometry function for {widget_name}')
     try:
         ini_file_path = pl.Path.home() / pl.Path(".boris")
         if ini_file_path.is_file():
             settings = QSettings(str(ini_file_path), QSettings.IniFormat)
+            print(settings.value(f"{widget_name} geometry"))
             widget.restoreGeometry(settings.value(f"{widget_name} geometry"))
+            logging.debug(f'geometry restored for {widget_name}  {settings.value(f"{widget_name} geometry")}')
+        else:
+            default_resize(widget, default_width_height)
     except Exception:
         logging.warning(f"error during restoring {widget_name} geometry")
-        if default_geometry != (0, 0):
-            try:
-                widget.resize(default_geometry[0], default_geometry[1])
-            except Exception:
-                logging.warning("Error during restoring default")
+        default_resize(widget, default_width_height)
 
 
 def set_icons(self, theme_mode: str) -> None:

{boris_behav_obs-9.2 → boris_behav_obs-9.2.3}/boris/observation_operations.py

@@ -359,14 +359,20 @@ def time_intervals_range(observations: dict, observations_list: list) -> Tuple[O
         decimal.Decimal: time of latest end interval
 
     """
-    start_interval_list = []
-    end_interval_list = []
+    start_interval_list: list = []
+    end_interval_list: list = []
     for obs_id in observations_list:
         observation = observations[obs_id]
         offset = observation[cfg.TIME_OFFSET]
-        if dec(observation[cfg.OBSERVATION_TIME_INTERVAL][0]) + offset and dec(observation[cfg.OBSERVATION_TIME_INTERVAL][1]) + offset:
-            start_interval_list.append(dec(observation[cfg.OBSERVATION_TIME_INTERVAL][0]) + offset)
-            end_interval_list.append(dec(observation[cfg.OBSERVATION_TIME_INTERVAL][1]) + offset)
+        # check if observation interval is defined
+        if (
+            not observation.get(cfg.OBSERVATION_TIME_INTERVAL, [None, None])[0]
+            and not observation.get(cfg.OBSERVATION_TIME_INTERVAL, [None, None])[1]
+        ):
+            return None, None
+
+        start_interval_list.append(dec(observation[cfg.OBSERVATION_TIME_INTERVAL][0]) + offset)
+        end_interval_list.append(dec(observation[cfg.OBSERVATION_TIME_INTERVAL][1]) + offset)
 
     if not start_interval_list:
         earliest_start_interval = None
@@ -872,8 +878,8 @@ def new_observation(self, mode: str = cfg.NEW, obsId: str = "") -> None:
             observationWindow.cb_observation_time_interval.setText(
                 (
                     "Limit observation to a time interval: "
-                    f"{self.pj[cfg.OBSERVATIONS][obsId][cfg.OBSERVATION_TIME_INTERVAL][0]} - "
-                    f"{self.pj[cfg.OBSERVATIONS][obsId][cfg.OBSERVATION_TIME_INTERVAL][1]}"
+                    f"{self.pj[cfg.OBSERVATIONS][obsId].get(cfg.OBSERVATION_TIME_INTERVAL, [0, 0])[0]} - "
+                    f"{self.pj[cfg.OBSERVATIONS][obsId].get(cfg.OBSERVATION_TIME_INTERVAL, [0, 0])[1]}"
                 )
             )
 
@@ -1950,8 +1956,9 @@ def initialize_new_media_observation(self) -> bool:
             )
 
             # position media
-            if cfg.OBSERVATION_TIME_INTERVAL in self.pj[cfg.OBSERVATIONS][self.observationId]:
-                self.seek_mediaplayer(int(self.pj[cfg.OBSERVATIONS][self.observationId][cfg.OBSERVATION_TIME_INTERVAL][0]), player=i)
+            self.seek_mediaplayer(
+                int(self.pj[cfg.OBSERVATIONS][self.observationId].get(cfg.OBSERVATION_TIME_INTERVAL, [0, 0])[0]), player=i
+            )
 
             # restore video zoom level
             if cfg.ZOOM_LEVEL in self.pj[cfg.OBSERVATIONS][self.observationId][cfg.MEDIA_INFO]:

{boris_behav_obs-9.2 → boris_behav_obs-9.2.3}/boris/player_dock_widget.py

@@ -23,7 +23,18 @@ This file is part of BORIS.
 import sys
 import logging
 import functools
-from PySide6.QtWidgets import QLabel, QDockWidget, QWidget, QHBoxLayout, QVBoxLayout, QSlider, QSizePolicy, QStackedWidget, QToolButton
+from PySide6.QtWidgets import (
+    QApplication,
+    QLabel,
+    QDockWidget,
+    QWidget,
+    QHBoxLayout,
+    QVBoxLayout,
+    QSlider,
+    QSizePolicy,
+    QStackedWidget,
+    QToolButton,
+)
 from PySide6.QtCore import Signal, QEvent, Qt
 from PySide6.QtGui import QIcon, QAction
 
@@ -141,7 +152,10 @@ class DW_player(QDockWidget):
         self.mute_button.setFocusPolicy(Qt.NoFocus)
         self.mute_button.setAutoRaise(True)
         self.mute_action = QAction()
-        self.mute_action.setIcon(QIcon(":/volume_xmark"))
+
+        theme_mode = "dark" if QApplication.instance().palette().window().color().value() < 128 else "light"
+
+        self.mute_action.setIcon(QIcon(f":/volume_xmark_{theme_mode}"))
         self.mute_action.triggered.connect(self.mute_action_triggered)
         self.mute_button.setDefaultAction(self.mute_action)
 
@@ -180,10 +194,11 @@ class DW_player(QDockWidget):
         """
         emit signal when mute action is triggered
         """
+        theme_mode = "dark" if QApplication.instance().palette().window().color().value() < 128 else "light"
         if self.player.mute:
-            self.mute_action.setIcon(QIcon(":/volume_xmark"))
+            self.mute_action.setIcon(QIcon(f":/volume_xmark_{theme_mode}"))
         else:
-            self.mute_action.setIcon(QIcon(":/volume_off"))
+            self.mute_action.setIcon(QIcon(f":/volume_off_{theme_mode}"))
         self.mute_action_triggered_signal.emit(self.id_)
 
     def keyPressEvent(self, event):

{boris_behav_obs-9.2 → boris_behav_obs-9.2.3}/boris/plot_events.py

@@ -441,7 +441,7 @@ def create_events_plot(
             max_time = float(obs_length)
 
         if interval == cfg.TIME_OBS_INTERVAL:
-            obs_interval = self.pj[cfg.OBSERVATIONS][obs_id][cfg.OBSERVATION_TIME_INTERVAL]
+            obs_interval = self.pj[cfg.OBSERVATIONS][obs_id].get(cfg.OBSERVATION_TIME_INTERVAL, [0, 0])
             offset = float(self.pj[cfg.OBSERVATIONS][obs_id][cfg.TIME_OFFSET])
             min_time = float(obs_interval[0]) + offset
             # Use max media duration for max time if no interval is defined (=0)

{boris_behav_obs-9.2 → boris_behav_obs-9.2.3}/boris/plugins.py

@@ -65,24 +65,44 @@ def load_plugins(self):
     """
     load selected plugins in analysis menu
     """
+
+    def msg():
+        QMessageBox.warning(
+            self,
+            cfg.programName,
+            f"A plugin with the same name is already loaded ({self.config_param[cfg.ANALYSIS_PLUGINS][plugin_name]}).\n\nThe plugin from {file_} is not loaded.",
+            QMessageBox.Ok | QMessageBox.Default,
+            QMessageBox.NoButton,
+        )
+
     self.menu_plugins.clear()
     self.config_param[cfg.ANALYSIS_PLUGINS] = {}
 
     # load BORIS plugins
-    for file_ in (Path(__file__).parent / "analysis_plugins").glob("*.py"):
+    for file_ in sorted((Path(__file__).parent / "analysis_plugins").glob("*.py")):
         if file_.name == "__init__.py":
             continue
         plugin_name = get_plugin_name(file_)
         if plugin_name is not None and plugin_name not in self.config_param.get(cfg.EXCLUDED_PLUGINS, set()):
+            # check if plugin with same name already loaded
+            if plugin_name in self.config_param[cfg.ANALYSIS_PLUGINS]:
+                msg()
+                continue
+
             self.config_param[cfg.ANALYSIS_PLUGINS][plugin_name] = str(file_)
 
     # load personal plugins
     if self.config_param.get(cfg.PERSONAL_PLUGINS_DIR, ""):
-        for file_ in Path(self.config_param.get(cfg.PERSONAL_PLUGINS_DIR, "")).glob("*.py"):
+        for file_ in sorted(Path(self.config_param.get(cfg.PERSONAL_PLUGINS_DIR, "")).glob("*.py")):
             if file_.name == "__init__.py":
                 continue
             plugin_name = get_plugin_name(file_)
             if plugin_name is not None and plugin_name not in self.config_param.get(cfg.EXCLUDED_PLUGINS, set()):
+                # check if plugin with same name already loaded
+                if plugin_name in self.config_param[cfg.ANALYSIS_PLUGINS]:
+                    msg()
+                    continue
+
                 self.config_param[cfg.ANALYSIS_PLUGINS][plugin_name] = str(file_)
 
     logging.debug(f"{self.config_param.get(cfg.ANALYSIS_PLUGINS, {})=}")
@@ -108,7 +128,7 @@ def plugin_df_filter(df: pd.DataFrame, observations_list: list = [], parameters:
         # filter selected behaviors
         df = df[df["Behavior"].isin(parameters["selected behaviors"])]
 
-        if parameters["time"] == "interval of observation":
+        if parameters["time"] == cfg.TIME_OBS_INTERVAL:
             # filter each observation with observation interval start/stop
 
             # keep events between observation interval start time and observation interval stop/end
@@ -142,6 +162,7 @@ def plugin_df_filter(df: pd.DataFrame, observations_list: list = [], parameters:
                     | ((df["Start (s)"] < MIN_TIME) & (df["Stop (s)"] > MAX_TIME))
                 ]
 
+                # cut state events to interval
                 df_interval.loc[df["Start (s)"] < MIN_TIME, "Start (s)"] = MIN_TIME
                 df_interval.loc[df["Stop (s)"] > MAX_TIME, "Stop (s)"] = MAX_TIME
 
@@ -152,7 +173,7 @@ def plugin_df_filter(df: pd.DataFrame, observations_list: list = [], parameters:
     print("filtered")
     print("=" * 50)
 
-    print(f"{df=}")
+    # print(f"{df=}")
 
     return df
 
@@ -205,8 +226,12 @@ def run_plugin(self, plugin_name):
     if not selected_observations:
         return
 
+    logging.info("preparing dtaaframe for plugin")
+
     df = project_functions.project2dataframe(self.pj, selected_observations)
 
+    logging.info("done")
+
     """
     logging.debug("dataframe info")
     logging.debug(f"{df.info()}")
@@ -214,7 +239,9 @@ def run_plugin(self, plugin_name):
     """
 
     # filter the dataframe with parameters
+    logging.info("filtering dataframe for plugin")
     filtered_df = plugin_df_filter(df, observations_list=selected_observations, parameters=parameters)
+    logging.info("done")
 
     plugin_results = plugin_module.run(filtered_df)
     # test if plugin_tests is a tuple: if not transform to tuple

{boris_behav_obs-9.2 → boris_behav_obs-9.2.3}/boris/project_functions.py

@@ -1899,20 +1899,12 @@ def project2dataframe(pj: dict, observations_list: list = []) -> pd.DataFrame:
             if idx_event in stop_event_idx:
                 continue
             data["Observation id"].append(obs_id)
-            data["Observation date"].append(pj["observations"][obs_id]["date"])
-            data["Description"].append(" ".join(pj["observations"][obs_id]["description"].splitlines()))
-            data["Observation type"].append(pj["observations"][obs_id]["type"])
-
-            data["Observation interval start"].append(
-                pj["observations"][obs_id]["observation time interval"][0]
-                if pj["observations"][obs_id]["observation time interval"][0]
-                else None
-            )
-            data["Observation interval stop"].append(
-                pj["observations"][obs_id]["observation time interval"][1]
-                if pj["observations"][obs_id]["observation time interval"][1]
-                else None
-            )
+            data["Observation date"].append(pj[cfg.OBSERVATIONS][obs_id]["date"])
+            data["Description"].append(" ".join(pj[cfg.OBSERVATIONS][obs_id]["description"].splitlines()))
+            data["Observation type"].append(pj[cfg.OBSERVATIONS][obs_id]["type"])
+
+            data["Observation interval start"].append(pj[cfg.OBSERVATIONS][obs_id].get(cfg.OBSERVATION_TIME_INTERVAL, [None, None])[0])
+            data["Observation interval stop"].append(pj[cfg.OBSERVATIONS][obs_id].get(cfg.OBSERVATION_TIME_INTERVAL, [None, None])[1])
 
             # data["Source"].append("")
             # data["Time offset (s)"].append(pj["observations"][obs_id]["time offset"])

{boris_behav_obs-9.2 → boris_behav_obs-9.2.3}/boris/synthetic_time_budget.py

@@ -71,8 +71,10 @@ def synthetic_time_budget(self) -> None:
         selected_observations,
         start_coding=start_coding,
         end_coding=end_coding,
-        start_interval=start_interval,
-        end_interval=end_interval,
+        # start_interval=start_interval,
+        # end_interval=end_interval,
+        start_interval=None,
+        end_interval=None,
         maxTime=max_media_duration_all_obs,
         show_exclude_non_coded_behaviors=False,
         by_category=False,
@@ -93,7 +95,7 @@ def synthetic_time_budget(self) -> None:
             title="Select behaviors to exclude from the total time",
             text="The duration of the selected behaviors will be subtracted from the total time",
             table="",
-            behavior_type=[cfg.STATE_EVENT],
+            behavior_type=cfg.STATE_EVENT_TYPES,
         )
         if cancel_pressed:
             return
@@ -201,8 +203,10 @@ def synthetic_binned_time_budget(self) -> None:
         selected_observations,
         start_coding=start_coding,
         end_coding=end_coding,
-        start_interval=start_interval,
-        end_interval=end_interval,
+        # start_interval=start_interval,
+        # end_interval=end_interval,
+        start_interval=None,
+        end_interval=None,
         maxTime=max_media_duration_all_obs,
         show_exclude_non_coded_behaviors=False,
         by_category=False,
@@ -221,9 +225,9 @@ def synthetic_binned_time_budget(self) -> None:
     # ask for excluding behaviors durations from total time
     cancel_pressed, synth_tb_param[cfg.EXCLUDED_BEHAVIORS] = self.filter_behaviors(
         title="Select behaviors to exclude",
-        text=("The duration of the selected behaviors will " "be subtracted from the total time"),
+        text=("The duration of the selected behaviors will be subtracted from the total time"),
         table="",
-        behavior_type=[cfg.STATE_EVENT],
+        behavior_type=cfg.STATE_EVENT_TYPES,
     )
     if cancel_pressed:
         return

{boris_behav_obs-9.2 → boris_behav_obs-9.2.3}/boris/time_budget_functions.py

@@ -260,7 +260,7 @@ def synthetic_time_budget_bin(pj: dict, selected_observations: list, parameters_
             max_time = dec(end_time)
 
         if time_interval == cfg.TIME_OBS_INTERVAL:
-            obs_interval = pj[cfg.OBSERVATIONS][obs_id][cfg.OBSERVATION_TIME_INTERVAL]
+            obs_interval = pj[cfg.OBSERVATIONS][obs_id].get(cfg.OBSERVATION_TIME_INTERVAL, [0, 0])
             offset = pj[cfg.OBSERVATIONS][obs_id][cfg.TIME_OFFSET]
             min_time = dec(obs_interval[0]) + offset
             # Use max media duration for max time if no interval is defined (=0)