boltz2-python-client 0.5.0__tar.gz → 0.5.1__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/CHANGELOG.md +6 -0
- {boltz2_python_client-0.5.0/boltz2_python_client.egg-info → boltz2_python_client-0.5.1}/PKG-INFO +30 -5
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/README.md +29 -4
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/boltz2_client/__init__.py +1 -1
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/boltz2_client/cli/info.py +7 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1/boltz2_python_client.egg-info}/PKG-INFO +30 -5
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/LICENSE +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/MANIFEST.in +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/boltz2_client/__main__.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/boltz2_client/a3m/__init__.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/boltz2_client/a3m/converter.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/boltz2_client/a3m/pairing.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/boltz2_client/a3m/parser.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/boltz2_client/a3m_to_csv_converter.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/boltz2_client/cli/__init__.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/boltz2_client/cli/msa.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/boltz2_client/cli/predict.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/boltz2_client/cli/screen.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/boltz2_client/client.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/boltz2_client/data/__init__.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/boltz2_client/data/speclist.txt +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/boltz2_client/exceptions.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/boltz2_client/models.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/boltz2_client/msa_search.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/boltz2_client/multi_endpoint_client.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/boltz2_client/utils.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/boltz2_client/virtual_screening.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/boltz2_python_client.egg-info/SOURCES.txt +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/boltz2_python_client.egg-info/dependency_links.txt +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/boltz2_python_client.egg-info/entry_points.txt +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/boltz2_python_client.egg-info/requires.txt +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/boltz2_python_client.egg-info/top_level.txt +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/docs/a3m_to_multimer_msa.md +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/docs/affinity_prediction.md +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/docs/async.md +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/docs/covalent_complex.md +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/docs/msa_search.md +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/docs/multi_endpoint.md +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/docs/parameters.md +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/docs/virtual_screening.md +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/docs/yaml.md +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/01_basic_protein_folding.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/02_protein_structure_prediction_with_msa.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/03_protein_ligand_complex.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/04_covalent_bonding.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/05_dna_protein_complex.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/06_yaml_configurations.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/07_advanced_parameters.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/08_affinity_prediction_simple.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/09_virtual_screening.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/10_msa_search_integration.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/11_msa_search_large_protein.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/12_msa_affinity_prediction.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/13_a3m_to_multimer_csv.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/README.md +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/barnase_barstar_with_msa.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/cdk4_msa_affinity_example.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/comprehensive_multi_endpoint_demo.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/data/cdk2_target.txt +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/data/cdk4_msa_affinity/cdk4_palbociclib_results.json +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/data/kinase_y7w_affinity.json +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/data/msa-kras-g12c_combined.a3m +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/data/multi_protein_complex.yaml +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/data/protein_ligand.yaml +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/data/sars_cov2_mpro_nirmatrelvir.yaml +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/data/test_msa_endpoint_curl.sh +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/msa_search_simple_demo.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/multi_endpoint_screening.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/notebooks/01_multimer_prediction.ipynb +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/notebooks/02_cdk4_msa_affinity_prediction.ipynb +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/notebooks/03_colabfold_a3m_to_multimer.ipynb +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/notebooks/boltz2_comprehensive_demo.ipynb +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/notebooks/boltz2_demo.ipynb +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/notebooks/boltz2_nim_DNA_Protein_Complex_example_py3Dmol.ipynb +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/examples/notebooks/boltz2_nim_protein_ligand_covalent_complex_molstar_visualization.ipynb +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/licenses/PyYAML-LICENSE +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/licenses/README.md +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/licenses/aiofiles-LICENSE +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/licenses/aiohttp-LICENSE +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/licenses/click-LICENSE +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/licenses/httpx-LICENSE +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/licenses/py3Dmol-LICENSE +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/licenses/pydantic-LICENSE +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/licenses/rich-LICENSE +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/licenses/typing-extensions-LICENSE +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/pyproject.toml +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/setup.cfg +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/tests/__init__.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/tests/conftest.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/tests/constants.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/tests/test_a3m_to_csv_converter.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/tests/test_basic.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/tests/test_cli_multi_endpoint.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/tests/test_comprehensive_stress.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/tests/test_examples_syntax.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/tests/test_integration_scenarios.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/tests/test_live_endpoints.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/tests/test_msa_search.py +0 -0
- {boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/tests/test_multi_endpoint_functionality.py +0 -0
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All notable changes to this project will be documented in this file.
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## [0.5.1] - 2026-04-07
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- CLI `metadata` command now shows a clear error for SageMaker endpoints instead of a cryptic `NoneType` error
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## [0.5.0] - 2026-04-07
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### Added
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{boltz2_python_client-0.5.0/boltz2_python_client.egg-info → boltz2_python_client-0.5.1}/PKG-INFO
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Metadata-Version: 2.2
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Name: boltz2-python-client
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Version: 0.5.
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Version: 0.5.1
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Summary: Python client for Boltz-2 protein structure prediction API with covalent complex and multi-endpoint support
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Author-email: NVIDIA Corporation <bionemo-support@nvidia.com>
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Maintainer-email: NVIDIA Corporation <bionemo-support@nvidia.com>
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### AWS SageMaker Endpoint
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```python
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# Requires: pip install "boltz2-python-client[sagemaker]"
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# AWS credentials must be configured (e.g. via AWS_ACCESS_KEY_ID/AWS_SECRET_ACCESS_KEY
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# environment variables, ~/.aws/credentials, or an IAM role)
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client = Boltz2SyncClient(
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# Predict protein structure — same API as local/hosted endpoints
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result = client.predict_protein_structure(
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sequence="MKTVRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRGYVLAGG",
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# Protein-ligand with affinity prediction
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)
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```
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```bash
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boltz2 --endpoint-type sagemaker --sagemaker-endpoint-name my-boltz2-endpoint \
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protein "MKTVRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRGYVLAGG"
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```
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## Supported Prediction Types
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result = client.predict_protein_structure(
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```
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```bash
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protein "MKTVRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRGYVLAGG"
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```
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## Supported Prediction Types
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print_error("Use 'boltz2 ... health' to check SageMaker endpoint status.")
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with Progress(
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@@ -108,6 +113,8 @@ def metadata(ctx):
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113
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console.print(table)
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|
+
except click.Abort:
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|
+
raise
|
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111
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|
except Exception as e:
|
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112
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print_error(f"Failed to get metadata: {e}")
|
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raise click.Abort()
|
{boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1/boltz2_python_client.egg-info}/PKG-INFO
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@@ -1,6 +1,6 @@
|
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1
1
|
Metadata-Version: 2.2
|
|
2
2
|
Name: boltz2-python-client
|
|
3
|
-
Version: 0.5.
|
|
3
|
+
Version: 0.5.1
|
|
4
4
|
Summary: Python client for Boltz-2 protein structure prediction API with covalent complex and multi-endpoint support
|
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5
5
|
Author-email: NVIDIA Corporation <bionemo-support@nvidia.com>
|
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6
6
|
Maintainer-email: NVIDIA Corporation <bionemo-support@nvidia.com>
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@@ -167,18 +167,43 @@ client = Boltz2Client(
|
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167
|
### AWS SageMaker Endpoint
|
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168
168
|
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169
169
|
```python
|
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|
-
|
|
170
|
+
from boltz2_client import Boltz2SyncClient
|
|
171
|
+
|
|
172
|
+
# Requires: pip install "boltz2-python-client[sagemaker]"
|
|
173
|
+
# AWS credentials must be configured (e.g. via AWS_ACCESS_KEY_ID/AWS_SECRET_ACCESS_KEY
|
|
174
|
+
# environment variables, ~/.aws/credentials, or an IAM role)
|
|
175
|
+
|
|
176
|
+
client = Boltz2SyncClient(
|
|
171
177
|
endpoint_type="sagemaker",
|
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172
178
|
sagemaker_endpoint_name="my-boltz2-endpoint",
|
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173
179
|
sagemaker_region="us-east-1",
|
|
174
180
|
)
|
|
175
|
-
```
|
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176
181
|
|
|
177
|
-
|
|
182
|
+
# Health check (calls describe_endpoint under the hood)
|
|
183
|
+
health = client.health_check()
|
|
184
|
+
print(f"Endpoint status: {health.status}")
|
|
185
|
+
|
|
186
|
+
# Predict protein structure — same API as local/hosted endpoints
|
|
187
|
+
result = client.predict_protein_structure(
|
|
188
|
+
sequence="MKTVRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRGYVLAGG",
|
|
189
|
+
recycling_steps=3,
|
|
190
|
+
sampling_steps=200,
|
|
191
|
+
)
|
|
192
|
+
print(f"Confidence: {result.confidence_scores[0]:.3f}")
|
|
193
|
+
|
|
194
|
+
# Protein-ligand with affinity prediction
|
|
195
|
+
result = client.predict_protein_ligand_complex(
|
|
196
|
+
protein_sequence="MKTVRQERLK...",
|
|
197
|
+
ligand_smiles="CC(=O)OC1=CC=CC=C1C(=O)O",
|
|
198
|
+
predict_affinity=True,
|
|
199
|
+
)
|
|
200
|
+
```
|
|
178
201
|
|
|
179
202
|
```bash
|
|
180
|
-
# CLI
|
|
203
|
+
# CLI — all commands work with SageMaker by adding the endpoint flags
|
|
181
204
|
boltz2 --endpoint-type sagemaker --sagemaker-endpoint-name my-boltz2-endpoint health
|
|
205
|
+
boltz2 --endpoint-type sagemaker --sagemaker-endpoint-name my-boltz2-endpoint \
|
|
206
|
+
protein "MKTVRQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVATPRGYVLAGG"
|
|
182
207
|
```
|
|
183
208
|
|
|
184
209
|
## Supported Prediction Types
|
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{boltz2_python_client-0.5.0 → boltz2_python_client-0.5.1}/licenses/typing-extensions-LICENSE
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RENAMED
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|