bmtool 0.6.9.26__tar.gz → 0.6.9.27__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (34) hide show
  1. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/PKG-INFO +1 -1
  2. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/analysis/netcon_reports.py +4 -4
  3. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool.egg-info/PKG-INFO +1 -1
  4. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/setup.py +1 -1
  5. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/LICENSE +0 -0
  6. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/README.md +0 -0
  7. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/SLURM.py +0 -0
  8. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/__init__.py +0 -0
  9. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/__main__.py +0 -0
  10. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/analysis/__init__.py +0 -0
  11. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/analysis/entrainment.py +0 -0
  12. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/analysis/lfp.py +0 -0
  13. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/analysis/spikes.py +0 -0
  14. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/bmplot.py +0 -0
  15. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/connectors.py +0 -0
  16. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/debug/__init__.py +0 -0
  17. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/debug/commands.py +0 -0
  18. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/debug/debug.py +0 -0
  19. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/graphs.py +0 -0
  20. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/manage.py +0 -0
  21. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/plot_commands.py +0 -0
  22. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/singlecell.py +0 -0
  23. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/synapses.py +0 -0
  24. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/util/__init__.py +0 -0
  25. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/util/commands.py +0 -0
  26. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/util/neuron/__init__.py +0 -0
  27. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/util/neuron/celltuner.py +0 -0
  28. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/util/util.py +0 -0
  29. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool.egg-info/SOURCES.txt +0 -0
  30. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool.egg-info/dependency_links.txt +0 -0
  31. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool.egg-info/entry_points.txt +0 -0
  32. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool.egg-info/requires.txt +0 -0
  33. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool.egg-info/top_level.txt +0 -0
  34. {bmtool-0.6.9.26 → bmtool-0.6.9.27}/setup.cfg +0 -0
{bmtool-0.6.9.26 → bmtool-0.6.9.27}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: bmtool
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- Version: 0.6.9.26
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+ Version: 0.6.9.27
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  Summary: BMTool
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  Home-page: https://github.com/cyneuro/bmtool
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  Download-URL:
{bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/analysis/netcon_reports.py RENAMED
@@ -4,7 +4,7 @@ import xarray as xr
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  import pandas as pd
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  from ..util.util import load_nodes_from_config
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- def load_synapse_report(h5_file_path, config_path):
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+ def load_synapse_report(h5_file_path, config_path, network):
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  """
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  Load and process a synapse report from a bmtk simulation into an xarray.
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@@ -23,7 +23,7 @@ def load_synapse_report(h5_file_path, config_path):
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  # Load the h5 file
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  with h5py.File(h5_file_path, 'r') as file:
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  # Get the report data
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- report = file['report']['cortex']
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+ report = file['report'][network]
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  mapping = report['mapping']
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  # Get the data - shape is (n_timesteps, n_synapses)
@@ -47,10 +47,10 @@ def load_synapse_report(h5_file_path, config_path):
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  # Load node information
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  nodes = load_nodes_from_config(config_path)
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- cortex_nodes = nodes['cortex']
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+ nodes = nodes[network]
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  # Create a mapping from node IDs to population names
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- node_to_pop = dict(zip(cortex_nodes.index, cortex_nodes['pop_name']))
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+ node_to_pop = dict(zip(nodes.index, nodes['pop_name']))
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  # Get the number of synapses
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  n_synapses = data.shape[1]
{bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: bmtool
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- Version: 0.6.9.26
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+ Version: 0.6.9.27
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  Summary: BMTool
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  Home-page: https://github.com/cyneuro/bmtool
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  Download-URL:
{bmtool-0.6.9.26 → bmtool-0.6.9.27}/setup.py RENAMED
@@ -6,7 +6,7 @@ with open("README.md", "r") as fh:
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  setup(
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  name="bmtool",
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- version='0.6.9.26',
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+ version='0.6.9.27',
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  author="Neural Engineering Laboratory at the University of Missouri",
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  author_email="gregglickert@mail.missouri.edu",
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  description="BMTool",
{bmtool-0.6.9.26 → bmtool-0.6.9.27}/LICENSE RENAMED
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{bmtool-0.6.9.26 → bmtool-0.6.9.27}/README.md RENAMED
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{bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/SLURM.py RENAMED
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{bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/__init__.py RENAMED
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{bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/__main__.py RENAMED
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{bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/bmplot.py RENAMED
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{bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/graphs.py RENAMED
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{bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/manage.py RENAMED
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{bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/synapses.py RENAMED
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{bmtool-0.6.9.26 → bmtool-0.6.9.27}/bmtool/util/util.py RENAMED
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{bmtool-0.6.9.26 → bmtool-0.6.9.27}/setup.cfg RENAMED
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