bmtool 0.6.9.17__tar.gz → 0.6.9.19__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (35) hide show
  1. bmtool-0.6.9.19/PKG-INFO +79 -0
  2. bmtool-0.6.9.19/README.md +32 -0
  3. bmtool-0.6.9.19/bmtool.egg-info/PKG-INFO +79 -0
  4. {bmtool-0.6.9.17 → bmtool-0.6.9.19}/setup.py +1 -1
  5. bmtool-0.6.9.17/PKG-INFO +0 -610
  6. bmtool-0.6.9.17/README.md +0 -563
  7. bmtool-0.6.9.17/bmtool.egg-info/PKG-INFO +0 -610
  8. {bmtool-0.6.9.17 → bmtool-0.6.9.19}/LICENSE +0 -0
  9. {bmtool-0.6.9.17 → bmtool-0.6.9.19}/bmtool/SLURM.py +0 -0
  10. {bmtool-0.6.9.17 → bmtool-0.6.9.19}/bmtool/__init__.py +0 -0
  11. {bmtool-0.6.9.17 → bmtool-0.6.9.19}/bmtool/__main__.py +0 -0
  12. {bmtool-0.6.9.17 → bmtool-0.6.9.19}/bmtool/analysis/__init__.py +0 -0
  13. {bmtool-0.6.9.17 → bmtool-0.6.9.19}/bmtool/analysis/lfp.py +0 -0
  14. {bmtool-0.6.9.17 → bmtool-0.6.9.19}/bmtool/analysis/spikes.py +0 -0
  15. {bmtool-0.6.9.17 → bmtool-0.6.9.19}/bmtool/bmplot.py +0 -0
  16. {bmtool-0.6.9.17 → bmtool-0.6.9.19}/bmtool/connectors.py +0 -0
  17. {bmtool-0.6.9.17 → bmtool-0.6.9.19}/bmtool/debug/__init__.py +0 -0
  18. {bmtool-0.6.9.17 → bmtool-0.6.9.19}/bmtool/debug/commands.py +0 -0
  19. {bmtool-0.6.9.17 → bmtool-0.6.9.19}/bmtool/debug/debug.py +0 -0
  20. {bmtool-0.6.9.17 → bmtool-0.6.9.19}/bmtool/graphs.py +0 -0
  21. {bmtool-0.6.9.17 → bmtool-0.6.9.19}/bmtool/manage.py +0 -0
  22. {bmtool-0.6.9.17 → bmtool-0.6.9.19}/bmtool/plot_commands.py +0 -0
  23. {bmtool-0.6.9.17 → bmtool-0.6.9.19}/bmtool/singlecell.py +0 -0
  24. {bmtool-0.6.9.17 → bmtool-0.6.9.19}/bmtool/synapses.py +0 -0
  25. {bmtool-0.6.9.17 → bmtool-0.6.9.19}/bmtool/util/__init__.py +0 -0
  26. {bmtool-0.6.9.17 → bmtool-0.6.9.19}/bmtool/util/commands.py +0 -0
  27. {bmtool-0.6.9.17 → bmtool-0.6.9.19}/bmtool/util/neuron/__init__.py +0 -0
  28. {bmtool-0.6.9.17 → bmtool-0.6.9.19}/bmtool/util/neuron/celltuner.py +0 -0
  29. {bmtool-0.6.9.17 → bmtool-0.6.9.19}/bmtool/util/util.py +0 -0
  30. {bmtool-0.6.9.17 → bmtool-0.6.9.19}/bmtool.egg-info/SOURCES.txt +0 -0
  31. {bmtool-0.6.9.17 → bmtool-0.6.9.19}/bmtool.egg-info/dependency_links.txt +0 -0
  32. {bmtool-0.6.9.17 → bmtool-0.6.9.19}/bmtool.egg-info/entry_points.txt +0 -0
  33. {bmtool-0.6.9.17 → bmtool-0.6.9.19}/bmtool.egg-info/requires.txt +0 -0
  34. {bmtool-0.6.9.17 → bmtool-0.6.9.19}/bmtool.egg-info/top_level.txt +0 -0
  35. {bmtool-0.6.9.17 → bmtool-0.6.9.19}/setup.cfg +0 -0
bmtool-0.6.9.19/PKG-INFO ADDED
@@ -0,0 +1,79 @@
1
+ Metadata-Version: 2.4
2
+ Name: bmtool
3
+ Version: 0.6.9.19
4
+ Summary: BMTool
5
+ Home-page: https://github.com/cyneuro/bmtool
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+ Download-URL:
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+ Author: Neural Engineering Laboratory at the University of Missouri
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+ Author-email: gregglickert@mail.missouri.edu
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+ License: MIT
10
+ Classifier: Intended Audience :: Developers
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+ Classifier: Intended Audience :: Education
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+ Classifier: Intended Audience :: Science/Research
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+ Classifier: License :: OSI Approved :: MIT License
14
+ Classifier: Programming Language :: Python :: 3
15
+ Classifier: Programming Language :: Python :: 3.6
16
+ Classifier: Topic :: Software Development :: Libraries
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+ Classifier: Topic :: Software Development :: Libraries :: Python Modules
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+ Classifier: Operating System :: OS Independent
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+ Description-Content-Type: text/markdown
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+ License-File: LICENSE
21
+ Requires-Dist: bmtk
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+ Requires-Dist: click
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+ Requires-Dist: clint
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+ Requires-Dist: h5py
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+ Requires-Dist: matplotlib
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+ Requires-Dist: networkx
27
+ Requires-Dist: numpy
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+ Requires-Dist: pandas
29
+ Requires-Dist: questionary
30
+ Requires-Dist: pynmodlt
31
+ Requires-Dist: xarray
32
+ Requires-Dist: fooof
33
+ Requires-Dist: requests
34
+ Requires-Dist: pyyaml
35
+ Requires-Dist: PyWavelets
36
+ Requires-Dist: numba
37
+ Dynamic: author
38
+ Dynamic: author-email
39
+ Dynamic: classifier
40
+ Dynamic: description
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+ Dynamic: description-content-type
42
+ Dynamic: home-page
43
+ Dynamic: license
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+ Dynamic: license-file
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+ Dynamic: requires-dist
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+ Dynamic: summary
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+
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+ # bmtool
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+ A collection of modules to make developing [Neuron](https://www.neuron.yale.edu/neuron/) and [BMTK](https://alleninstitute.github.io/bmtk/) models easier.
50
+
51
+ [![license](https://img.shields.io/github/license/mashape/apistatus.svg?maxAge=2592000)](https://github.com/cyneuro/bmtool/blob/master/LICENSE)
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+
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+ ## In depth documentation and examples can be found [here](https://cyneuro.github.io/bmtool/)
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+
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+ ## Getting Started
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+
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+ **Installation**
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+ ```bash
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+ pip install bmtool
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+ ```
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+ For developers who will be pulling down additional updates to this repository regularly use the following instead.
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+ ```bash
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+ git clone https://github.com/cyneuro/bmtool.git
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+ cd bmtool
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+ python setup.py develop
66
+ ```
67
+ Then download updates (from this directory) with
68
+ ```bash
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+ git pull
70
+ ```
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+
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+ BMTool provides several modules to simplify the development of computational neuroscience models with NEURON and the Brain Modeling Toolkit (BMTK). It offers functionality for:
73
+
74
+ - **Single Cell Modeling**: Analyze passive properties, current injection, FI curves, and impedance profiles
75
+ - **Synapse Development**: Tools for tuning synaptic properties and gap junctions
76
+ - **Network Construction**: Connectors for building complex network structures
77
+ - **Visualization**: Plot connection matrices, network positions, and more
78
+ - **Simulation Management**: Run simulations on SLURM clusters with parameter sweeps
79
+ - **Analysis**: Process simulation results efficiently
bmtool-0.6.9.19/README.md ADDED
@@ -0,0 +1,32 @@
1
+ # bmtool
2
+ A collection of modules to make developing [Neuron](https://www.neuron.yale.edu/neuron/) and [BMTK](https://alleninstitute.github.io/bmtk/) models easier.
3
+
4
+ [![license](https://img.shields.io/github/license/mashape/apistatus.svg?maxAge=2592000)](https://github.com/cyneuro/bmtool/blob/master/LICENSE)
5
+
6
+ ## In depth documentation and examples can be found [here](https://cyneuro.github.io/bmtool/)
7
+
8
+ ## Getting Started
9
+
10
+ **Installation**
11
+ ```bash
12
+ pip install bmtool
13
+ ```
14
+ For developers who will be pulling down additional updates to this repository regularly use the following instead.
15
+ ```bash
16
+ git clone https://github.com/cyneuro/bmtool.git
17
+ cd bmtool
18
+ python setup.py develop
19
+ ```
20
+ Then download updates (from this directory) with
21
+ ```bash
22
+ git pull
23
+ ```
24
+
25
+ BMTool provides several modules to simplify the development of computational neuroscience models with NEURON and the Brain Modeling Toolkit (BMTK). It offers functionality for:
26
+
27
+ - **Single Cell Modeling**: Analyze passive properties, current injection, FI curves, and impedance profiles
28
+ - **Synapse Development**: Tools for tuning synaptic properties and gap junctions
29
+ - **Network Construction**: Connectors for building complex network structures
30
+ - **Visualization**: Plot connection matrices, network positions, and more
31
+ - **Simulation Management**: Run simulations on SLURM clusters with parameter sweeps
32
+ - **Analysis**: Process simulation results efficiently
bmtool-0.6.9.19/bmtool.egg-info/PKG-INFO ADDED
@@ -0,0 +1,79 @@
1
+ Metadata-Version: 2.4
2
+ Name: bmtool
3
+ Version: 0.6.9.19
4
+ Summary: BMTool
5
+ Home-page: https://github.com/cyneuro/bmtool
6
+ Download-URL:
7
+ Author: Neural Engineering Laboratory at the University of Missouri
8
+ Author-email: gregglickert@mail.missouri.edu
9
+ License: MIT
10
+ Classifier: Intended Audience :: Developers
11
+ Classifier: Intended Audience :: Education
12
+ Classifier: Intended Audience :: Science/Research
13
+ Classifier: License :: OSI Approved :: MIT License
14
+ Classifier: Programming Language :: Python :: 3
15
+ Classifier: Programming Language :: Python :: 3.6
16
+ Classifier: Topic :: Software Development :: Libraries
17
+ Classifier: Topic :: Software Development :: Libraries :: Python Modules
18
+ Classifier: Operating System :: OS Independent
19
+ Description-Content-Type: text/markdown
20
+ License-File: LICENSE
21
+ Requires-Dist: bmtk
22
+ Requires-Dist: click
23
+ Requires-Dist: clint
24
+ Requires-Dist: h5py
25
+ Requires-Dist: matplotlib
26
+ Requires-Dist: networkx
27
+ Requires-Dist: numpy
28
+ Requires-Dist: pandas
29
+ Requires-Dist: questionary
30
+ Requires-Dist: pynmodlt
31
+ Requires-Dist: xarray
32
+ Requires-Dist: fooof
33
+ Requires-Dist: requests
34
+ Requires-Dist: pyyaml
35
+ Requires-Dist: PyWavelets
36
+ Requires-Dist: numba
37
+ Dynamic: author
38
+ Dynamic: author-email
39
+ Dynamic: classifier
40
+ Dynamic: description
41
+ Dynamic: description-content-type
42
+ Dynamic: home-page
43
+ Dynamic: license
44
+ Dynamic: license-file
45
+ Dynamic: requires-dist
46
+ Dynamic: summary
47
+
48
+ # bmtool
49
+ A collection of modules to make developing [Neuron](https://www.neuron.yale.edu/neuron/) and [BMTK](https://alleninstitute.github.io/bmtk/) models easier.
50
+
51
+ [![license](https://img.shields.io/github/license/mashape/apistatus.svg?maxAge=2592000)](https://github.com/cyneuro/bmtool/blob/master/LICENSE)
52
+
53
+ ## In depth documentation and examples can be found [here](https://cyneuro.github.io/bmtool/)
54
+
55
+ ## Getting Started
56
+
57
+ **Installation**
58
+ ```bash
59
+ pip install bmtool
60
+ ```
61
+ For developers who will be pulling down additional updates to this repository regularly use the following instead.
62
+ ```bash
63
+ git clone https://github.com/cyneuro/bmtool.git
64
+ cd bmtool
65
+ python setup.py develop
66
+ ```
67
+ Then download updates (from this directory) with
68
+ ```bash
69
+ git pull
70
+ ```
71
+
72
+ BMTool provides several modules to simplify the development of computational neuroscience models with NEURON and the Brain Modeling Toolkit (BMTK). It offers functionality for:
73
+
74
+ - **Single Cell Modeling**: Analyze passive properties, current injection, FI curves, and impedance profiles
75
+ - **Synapse Development**: Tools for tuning synaptic properties and gap junctions
76
+ - **Network Construction**: Connectors for building complex network structures
77
+ - **Visualization**: Plot connection matrices, network positions, and more
78
+ - **Simulation Management**: Run simulations on SLURM clusters with parameter sweeps
79
+ - **Analysis**: Process simulation results efficiently
{bmtool-0.6.9.17 → bmtool-0.6.9.19}/setup.py RENAMED
@@ -6,7 +6,7 @@ with open("README.md", "r") as fh:
6
6
 
7
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  setup(
8
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  name="bmtool",
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- version='0.6.9.17',
9
+ version='0.6.9.19',
10
10
  author="Neural Engineering Laboratory at the University of Missouri",
11
11
  author_email="gregglickert@mail.missouri.edu",
12
12
  description="BMTool",