bluecellulab 2.6.6__tar.gz → 2.6.7__tar.gz

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  1. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/.github/workflows/release.yml +1 -1
  2. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/PKG-INFO +1 -1
  3. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab.egg-info/PKG-INFO +1 -1
  4. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/.compile_mod.sh +0 -0
  5. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/.gitattributes +0 -0
  6. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/.github/dependabot.yml +0 -0
  7. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/.github/workflows/test.yml +0 -0
  8. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/.gitignore +0 -0
  9. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/.gitlab-ci.yml +0 -0
  10. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/.readthedocs.yml +0 -0
  11. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/.zenodo.json +0 -0
  12. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/AUTHORS.txt +0 -0
  13. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/CHANGELOG.rst +0 -0
  14. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/LICENSE +0 -0
  15. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/MANIFEST.in +0 -0
  16. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/Makefile +0 -0
  17. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/README.rst +0 -0
  18. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/__init__.py +0 -0
  19. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/analysis/__init__.py +0 -0
  20. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/analysis/inject_sequence.py +0 -0
  21. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/cell/__init__.py +0 -0
  22. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/cell/ballstick/__init__.py +0 -0
  23. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/cell/ballstick/emodel.hoc +0 -0
  24. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/cell/ballstick/morphology.asc +0 -0
  25. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/cell/cell_dict.py +0 -0
  26. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/cell/core.py +0 -0
  27. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/cell/injector.py +0 -0
  28. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/cell/plotting.py +0 -0
  29. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/cell/random.py +0 -0
  30. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/cell/recording.py +0 -0
  31. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/cell/section_distance.py +0 -0
  32. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/cell/serialized_sections.py +0 -0
  33. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/cell/sonata_proxy.py +0 -0
  34. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/cell/stimuli_generator.py +0 -0
  35. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/cell/template.py +0 -0
  36. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/circuit/__init__.py +0 -0
  37. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/circuit/circuit_access/__init__.py +0 -0
  38. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/circuit/circuit_access/bluepy_circuit_access.py +0 -0
  39. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/circuit/circuit_access/definition.py +0 -0
  40. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/circuit/circuit_access/sonata_circuit_access.py +0 -0
  41. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/circuit/config/__init__.py +0 -0
  42. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/circuit/config/bluepy_simulation_config.py +0 -0
  43. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/circuit/config/definition.py +0 -0
  44. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/circuit/config/sections.py +0 -0
  45. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/circuit/config/sonata_simulation_config.py +0 -0
  46. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/circuit/format.py +0 -0
  47. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/circuit/iotools.py +0 -0
  48. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/circuit/node_id.py +0 -0
  49. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/circuit/simulation_access.py +0 -0
  50. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/circuit/synapse_properties.py +0 -0
  51. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/circuit/validate.py +0 -0
  52. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/circuit_simulation.py +0 -0
  53. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/connection.py +0 -0
  54. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/dendrogram.py +0 -0
  55. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/exceptions.py +0 -0
  56. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/graph.py +0 -0
  57. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/hoc/Cell.hoc +0 -0
  58. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/hoc/RNGSettings.hoc +0 -0
  59. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/hoc/TDistFunc.hoc +0 -0
  60. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/hoc/TStim.hoc +0 -0
  61. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/hoc/fileUtils.hoc +0 -0
  62. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/importer.py +0 -0
  63. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/neuron_interpreter.py +0 -0
  64. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/plotwindow.py +0 -0
  65. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/psection.py +0 -0
  66. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/psegment.py +0 -0
  67. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/rngsettings.py +0 -0
  68. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/simulation/__init__.py +0 -0
  69. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/simulation/neuron_globals.py +0 -0
  70. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/simulation/parallel.py +0 -0
  71. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/simulation/simulation.py +0 -0
  72. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/stimulus/__init__.py +0 -0
  73. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/stimulus/circuit_stimulus_definitions.py +0 -0
  74. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/stimulus/factory.py +0 -0
  75. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/synapse/__init__.py +0 -0
  76. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/synapse/synapse_factory.py +0 -0
  77. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/synapse/synapse_types.py +0 -0
  78. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/tools.py +0 -0
  79. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/type_aliases.py +0 -0
  80. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/utils.py +0 -0
  81. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab/verbosity.py +0 -0
  82. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab.egg-info/SOURCES.txt +0 -0
  83. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab.egg-info/dependency_links.txt +0 -0
  84. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab.egg-info/requires.txt +0 -0
  85. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/bluecellulab.egg-info/top_level.txt +0 -0
  86. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/docs/Makefile +0 -0
  87. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/docs/images/voltage-readme.png +0 -0
  88. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/docs/make.bat +0 -0
  89. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/docs/requirements_docs.txt +0 -0
  90. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/docs/source/_static/.gitkeep +0 -0
  91. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/docs/source/api.rst +0 -0
  92. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/docs/source/changelog.rst +0 -0
  93. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/docs/source/compiling-mechanisms.rst +0 -0
  94. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/docs/source/conf.py +0 -0
  95. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/docs/source/index.rst +0 -0
  96. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/docs/source/list_of_stim.rst +0 -0
  97. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/docs/source/logo/BlueCelluLabBanner.jpg +0 -0
  98. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/1-singlecell/README.md +0 -0
  99. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/1-singlecell/hoc/cADpyr_L2TPC.hoc +0 -0
  100. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/1-singlecell/morphology/rr110330_C3_idA.asc +0 -0
  101. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/1-singlecell/singlecell.ipynb +0 -0
  102. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/circuit_sonata_quick_scx_multi_circuit/.exception_node +0 -0
  103. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/circuit_sonata_quick_scx_multi_circuit/circuit_sonata.json +0 -0
  104. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/circuit_sonata_quick_scx_multi_circuit/components/CircuitA/hoc/cADpyr_L2TPC.hoc +0 -0
  105. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/circuit_sonata_quick_scx_multi_circuit/components/CircuitA/hoc/cNAC_L23BTC.hoc +0 -0
  106. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/circuit_sonata_quick_scx_multi_circuit/components/CircuitA/morphologies/asc/C210401C.asc +0 -0
  107. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/circuit_sonata_quick_scx_multi_circuit/components/CircuitA/morphologies/asc/rr110330_C3_idA.asc +0 -0
  108. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/circuit_sonata_quick_scx_multi_circuit/components/CircuitA/morphologies/swc/C210401C.swc +0 -0
  109. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/circuit_sonata_quick_scx_multi_circuit/components/CircuitA/morphologies/swc/rr110330_C3_idA.swc +0 -0
  110. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/circuit_sonata_quick_scx_multi_circuit/components/CircuitB/hoc/bAC_IN.hoc +0 -0
  111. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/circuit_sonata_quick_scx_multi_circuit/components/CircuitB/hoc/cNAD_noscltb.hoc +0 -0
  112. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/circuit_sonata_quick_scx_multi_circuit/components/CircuitB/morphologies/asc/dend-jy180406_B_idC_axon-jy171019_B_10x_resta_idB_-_Scale_x1.000_y0.950_z1.000_-_Clone_1.asc +0 -0
  113. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/circuit_sonata_quick_scx_multi_circuit/components/CircuitB/morphologies/asc/dend-jy180406_C_idB_axon-04752-04764-X11537-Y13753_final_-_Clone_3.asc +0 -0
  114. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/circuit_sonata_quick_scx_multi_circuit/components/CircuitB/morphologies/swc/dend-jy180406_B_idC_axon-jy171019_B_10x_resta_idB_-_Scale_x1.000_y0.950_z1.000_-_Clone_1.swc +0 -0
  115. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/circuit_sonata_quick_scx_multi_circuit/components/CircuitB/morphologies/swc/dend-jy180406_C_idB_axon-04752-04764-X11537-Y13753_final_-_Clone_3.swc +0 -0
  116. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/circuit_sonata_quick_scx_multi_circuit/edges_AB.h5 +0 -0
  117. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/circuit_sonata_quick_scx_multi_circuit/edges_AB.h5.txt +0 -0
  118. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/circuit_sonata_quick_scx_multi_circuit/local_edges_A.h5 +0 -0
  119. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/circuit_sonata_quick_scx_multi_circuit/local_edges_A.h5.txt +0 -0
  120. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/circuit_sonata_quick_scx_multi_circuit/local_edges_B.h5 +0 -0
  121. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/circuit_sonata_quick_scx_multi_circuit/local_edges_B.h5.txt +0 -0
  122. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/circuit_sonata_quick_scx_multi_circuit/node_sets.json +0 -0
  123. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/circuit_sonata_quick_scx_multi_circuit/nodes_A.h5 +0 -0
  124. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/circuit_sonata_quick_scx_multi_circuit/nodes_A.h5.txt +0 -0
  125. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/circuit_sonata_quick_scx_multi_circuit/nodes_B.h5 +0 -0
  126. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/circuit_sonata_quick_scx_multi_circuit/nodes_B.h5.txt +0 -0
  127. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/circuit_sonata_quick_scx_multi_circuit/simulation_sonata.json +0 -0
  128. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/sim_quick_scx_sonata_multicircuit/circuit_sonata.json +0 -0
  129. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/sim_quick_scx_sonata_multicircuit/output_sonata_hypamp/out.h5 +0 -0
  130. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/sim_quick_scx_sonata_multicircuit/output_sonata_hypamp/populations_offset.dat +0 -0
  131. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/sim_quick_scx_sonata_multicircuit/output_sonata_hypamp/soma.h5 +0 -0
  132. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/sim_quick_scx_sonata_multicircuit/output_sonata_noinput/out.h5 +0 -0
  133. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/sim_quick_scx_sonata_multicircuit/output_sonata_noinput/populations_offset.dat +0 -0
  134. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/sim_quick_scx_sonata_multicircuit/output_sonata_noinput/soma.h5 +0 -0
  135. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/sim_quick_scx_sonata_multicircuit/output_sonata_ornstein/out.h5 +0 -0
  136. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/sim_quick_scx_sonata_multicircuit/output_sonata_ornstein/populations_offset.dat +0 -0
  137. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/sim_quick_scx_sonata_multicircuit/output_sonata_ornstein/soma.h5 +0 -0
  138. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/sim_quick_scx_sonata_multicircuit/output_sonata_shotnoise/out.h5 +0 -0
  139. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/sim_quick_scx_sonata_multicircuit/output_sonata_shotnoise/populations_offset.dat +0 -0
  140. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/sim_quick_scx_sonata_multicircuit/output_sonata_shotnoise/soma.h5 +0 -0
  141. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/sim_quick_scx_sonata_multicircuit/simulation_config_hypamp.json +0 -0
  142. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/sim_quick_scx_sonata_multicircuit/simulation_config_noinput.json +0 -0
  143. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/sim_quick_scx_sonata_multicircuit/simulation_config_ornstein.json +0 -0
  144. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/sim_quick_scx_sonata_multicircuit/simulation_config_shotnoise.json +0 -0
  145. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/2-sonata-network/sonata-network.ipynb +0 -0
  146. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/3-bpap/bpap.ipynb +0 -0
  147. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/4-epsp/epsp.ipynb +0 -0
  148. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/4-epsp/hippocampus_mechanisms/cacumm.mod +0 -0
  149. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/4-epsp/hippocampus_mechanisms/cagk.mod +0 -0
  150. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/4-epsp/hippocampus_mechanisms/cal2.mod +0 -0
  151. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/4-epsp/hippocampus_mechanisms/can2.mod +0 -0
  152. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/4-epsp/hippocampus_mechanisms/cat.mod +0 -0
  153. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/4-epsp/hippocampus_mechanisms/h.mod +0 -0
  154. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/4-epsp/hippocampus_mechanisms/kadist.mod +0 -0
  155. {bluecellulab-2.6.6 → bluecellulab-2.6.7}/examples/4-epsp/hippocampus_mechanisms/kaprox.mod +0 -0
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  Summary: Biologically detailed neural network simulations and analysis.
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