bluecellulab 2.6.69__tar.gz → 2.6.70__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.

Potentially problematic release.

This version of bluecellulab might be problematic. Click here for more details.

Files changed (117) hide show
  1. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/PKG-INFO +1 -1
  2. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/tools.py +1 -1
  3. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab.egg-info/PKG-INFO +1 -1
  4. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/.compile_mod.sh +0 -0
  5. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/.gitattributes +0 -0
  6. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/.github/dependabot.yml +0 -0
  7. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/.github/workflows/release.yml +0 -0
  8. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/.github/workflows/test.yml +0 -0
  9. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/.gitignore +0 -0
  10. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/.gitlab-ci.yml +0 -0
  11. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/.readthedocs.yml +0 -0
  12. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/.zenodo.json +0 -0
  13. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/AUTHORS.txt +0 -0
  14. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/CHANGELOG.rst +0 -0
  15. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/CITATION.cff +0 -0
  16. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/CONTRIBUTING.rst +0 -0
  17. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/LICENSE +0 -0
  18. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/MANIFEST.in +0 -0
  19. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/Makefile +0 -0
  20. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/README.rst +0 -0
  21. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/__init__.py +0 -0
  22. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/analysis/__init__.py +0 -0
  23. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/analysis/analysis.py +0 -0
  24. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/analysis/inject_sequence.py +0 -0
  25. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/analysis/plotting.py +0 -0
  26. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/analysis/utils.py +0 -0
  27. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/cell/__init__.py +0 -0
  28. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/cell/ballstick/__init__.py +0 -0
  29. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/cell/ballstick/emodel.hoc +0 -0
  30. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/cell/ballstick/morphology.asc +0 -0
  31. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/cell/cell_dict.py +0 -0
  32. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/cell/core.py +0 -0
  33. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/cell/injector.py +0 -0
  34. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/cell/plotting.py +0 -0
  35. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/cell/random.py +0 -0
  36. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/cell/recording.py +0 -0
  37. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/cell/section_distance.py +0 -0
  38. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/cell/section_tools.py +0 -0
  39. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/cell/serialized_sections.py +0 -0
  40. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/cell/sonata_proxy.py +0 -0
  41. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/cell/stimuli_generator.py +0 -0
  42. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/cell/template.py +0 -0
  43. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/circuit/__init__.py +0 -0
  44. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/circuit/circuit_access/__init__.py +0 -0
  45. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/circuit/circuit_access/bluepy_circuit_access.py +0 -0
  46. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/circuit/circuit_access/definition.py +0 -0
  47. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/circuit/circuit_access/sonata_circuit_access.py +0 -0
  48. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/circuit/config/__init__.py +0 -0
  49. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/circuit/config/bluepy_simulation_config.py +0 -0
  50. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/circuit/config/definition.py +0 -0
  51. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/circuit/config/sections.py +0 -0
  52. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/circuit/config/sonata_simulation_config.py +0 -0
  53. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/circuit/format.py +0 -0
  54. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/circuit/iotools.py +0 -0
  55. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/circuit/node_id.py +0 -0
  56. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/circuit/simulation_access.py +0 -0
  57. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/circuit/synapse_properties.py +0 -0
  58. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/circuit/validate.py +0 -0
  59. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/circuit_simulation.py +0 -0
  60. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/connection.py +0 -0
  61. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/dendrogram.py +0 -0
  62. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/exceptions.py +0 -0
  63. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/graph.py +0 -0
  64. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/hoc/Cell.hoc +0 -0
  65. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/hoc/RNGSettings.hoc +0 -0
  66. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/hoc/TDistFunc.hoc +0 -0
  67. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/hoc/TStim.hoc +0 -0
  68. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/hoc/fileUtils.hoc +0 -0
  69. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/importer.py +0 -0
  70. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/neuron_interpreter.py +0 -0
  71. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/plotwindow.py +0 -0
  72. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/psection.py +0 -0
  73. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/psegment.py +0 -0
  74. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/reports/__init__.py +0 -0
  75. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/reports/manager.py +0 -0
  76. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/reports/utils.py +0 -0
  77. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/reports/writers/__init__.py +0 -0
  78. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/reports/writers/base_writer.py +0 -0
  79. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/reports/writers/compartment.py +0 -0
  80. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/reports/writers/spikes.py +0 -0
  81. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/rngsettings.py +0 -0
  82. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/simulation/__init__.py +0 -0
  83. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/simulation/neuron_globals.py +0 -0
  84. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/simulation/parallel.py +0 -0
  85. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/simulation/report.py +0 -0
  86. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/simulation/simulation.py +0 -0
  87. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/stimulus/__init__.py +0 -0
  88. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/stimulus/circuit_stimulus_definitions.py +0 -0
  89. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/stimulus/factory.py +0 -0
  90. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/stimulus/stimulus.py +0 -0
  91. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/synapse/__init__.py +0 -0
  92. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/synapse/synapse_factory.py +0 -0
  93. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/synapse/synapse_types.py +0 -0
  94. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/type_aliases.py +0 -0
  95. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/utils.py +0 -0
  96. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/validation/validation.py +0 -0
  97. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/verbosity.py +0 -0
  98. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab.egg-info/SOURCES.txt +0 -0
  99. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab.egg-info/dependency_links.txt +0 -0
  100. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab.egg-info/requires.txt +0 -0
  101. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab.egg-info/top_level.txt +0 -0
  102. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/docs/Makefile +0 -0
  103. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/docs/images/voltage-readme.png +0 -0
  104. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/docs/make.bat +0 -0
  105. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/docs/requirements_docs.txt +0 -0
  106. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/docs/source/_static/.gitkeep +0 -0
  107. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/docs/source/api.rst +0 -0
  108. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/docs/source/changelog.rst +0 -0
  109. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/docs/source/compiling-mechanisms.rst +0 -0
  110. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/docs/source/conf.py +0 -0
  111. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/docs/source/contributing.rst +0 -0
  112. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/docs/source/index.rst +0 -0
  113. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/docs/source/list_of_stim.rst +0 -0
  114. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/docs/source/logo/BlueCelluLabBanner.jpg +0 -0
  115. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/pyproject.toml +0 -0
  116. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/setup.cfg +0 -0
  117. {bluecellulab-2.6.69 → bluecellulab-2.6.70}/tox.ini +0 -0
{bluecellulab-2.6.69 → bluecellulab-2.6.70}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: bluecellulab
3
- Version: 2.6.69
3
+ Version: 2.6.70
4
4
  Summary: Biologically detailed neural network simulations and analysis.
5
5
  Author: Blue Brain Project, EPFL
6
6
  License: Apache2.0
{bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab/tools.py RENAMED
@@ -127,7 +127,7 @@ def calculate_SS_voltage_subprocess(
127
127
  simulation.run(1000, cvode=template_accepts_cvode(template_path))
128
128
  time = cell.get_time()
129
129
  voltage = cell.get_voltage_recording(section=neuron_section, segx=segx)
130
- SS_voltage = np.mean(voltage[np.where((time < 1000) & (time > 800))])
130
+ SS_voltage = np.mean(voltage[np.where((time <= 1000) & (time > 800))])
131
131
  cell.delete()
132
132
 
133
133
  if check_for_spiking:
{bluecellulab-2.6.69 → bluecellulab-2.6.70}/bluecellulab.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: bluecellulab
3
- Version: 2.6.69
3
+ Version: 2.6.70
4
4
  Summary: Biologically detailed neural network simulations and analysis.
5
5
  Author: Blue Brain Project, EPFL
6
6
  License: Apache2.0
{bluecellulab-2.6.69 → bluecellulab-2.6.70}/.gitignore RENAMED
File without changes
{bluecellulab-2.6.69 → bluecellulab-2.6.70}/AUTHORS.txt RENAMED
File without changes
{bluecellulab-2.6.69 → bluecellulab-2.6.70}/LICENSE RENAMED
File without changes
{bluecellulab-2.6.69 → bluecellulab-2.6.70}/MANIFEST.in RENAMED
File without changes
{bluecellulab-2.6.69 → bluecellulab-2.6.70}/Makefile RENAMED
File without changes
{bluecellulab-2.6.69 → bluecellulab-2.6.70}/README.rst RENAMED
File without changes
{bluecellulab-2.6.69 → bluecellulab-2.6.70}/setup.cfg RENAMED
File without changes
{bluecellulab-2.6.69 → bluecellulab-2.6.70}/tox.ini RENAMED
File without changes