bluecellulab 2.6.56__tar.gz → 2.6.57__tar.gz

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  1. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/PKG-INFO +1 -1
  2. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/validation/validation.py +5 -3
  3. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab.egg-info/PKG-INFO +1 -1
  4. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/.compile_mod.sh +0 -0
  5. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/.gitattributes +0 -0
  6. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/.github/dependabot.yml +0 -0
  7. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/.github/workflows/release.yml +0 -0
  8. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/.github/workflows/test.yml +0 -0
  9. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/.gitignore +0 -0
  10. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/.gitlab-ci.yml +0 -0
  11. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/.readthedocs.yml +0 -0
  12. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/.zenodo.json +0 -0
  13. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/AUTHORS.txt +0 -0
  14. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/CHANGELOG.rst +0 -0
  15. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/CITATION.cff +0 -0
  16. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/CONTRIBUTING.rst +0 -0
  17. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/LICENSE +0 -0
  18. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/MANIFEST.in +0 -0
  19. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/Makefile +0 -0
  20. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/README.rst +0 -0
  21. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/__init__.py +0 -0
  22. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/analysis/__init__.py +0 -0
  23. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/analysis/analysis.py +0 -0
  24. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/analysis/inject_sequence.py +0 -0
  25. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/analysis/plotting.py +0 -0
  26. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/analysis/utils.py +0 -0
  27. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/cell/__init__.py +0 -0
  28. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/cell/ballstick/__init__.py +0 -0
  29. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/cell/ballstick/emodel.hoc +0 -0
  30. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/cell/ballstick/morphology.asc +0 -0
  31. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/cell/cell_dict.py +0 -0
  32. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/cell/core.py +0 -0
  33. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/cell/injector.py +0 -0
  34. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/cell/plotting.py +0 -0
  35. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/cell/random.py +0 -0
  36. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/cell/recording.py +0 -0
  37. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/cell/section_distance.py +0 -0
  38. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/cell/serialized_sections.py +0 -0
  39. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/cell/sonata_proxy.py +0 -0
  40. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/cell/stimuli_generator.py +0 -0
  41. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/cell/template.py +0 -0
  42. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/circuit/__init__.py +0 -0
  43. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/circuit/circuit_access/__init__.py +0 -0
  44. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/circuit/circuit_access/bluepy_circuit_access.py +0 -0
  45. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/circuit/circuit_access/definition.py +0 -0
  46. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/circuit/circuit_access/sonata_circuit_access.py +0 -0
  47. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/circuit/config/__init__.py +0 -0
  48. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/circuit/config/bluepy_simulation_config.py +0 -0
  49. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/circuit/config/definition.py +0 -0
  50. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/circuit/config/sections.py +0 -0
  51. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/circuit/config/sonata_simulation_config.py +0 -0
  52. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/circuit/format.py +0 -0
  53. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/circuit/iotools.py +0 -0
  54. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/circuit/node_id.py +0 -0
  55. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/circuit/simulation_access.py +0 -0
  56. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/circuit/synapse_properties.py +0 -0
  57. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/circuit/validate.py +0 -0
  58. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/circuit_simulation.py +0 -0
  59. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/connection.py +0 -0
  60. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/dendrogram.py +0 -0
  61. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/exceptions.py +0 -0
  62. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/graph.py +0 -0
  63. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/hoc/Cell.hoc +0 -0
  64. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/hoc/RNGSettings.hoc +0 -0
  65. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/hoc/TDistFunc.hoc +0 -0
  66. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/hoc/TStim.hoc +0 -0
  67. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/hoc/fileUtils.hoc +0 -0
  68. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/importer.py +0 -0
  69. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/neuron_interpreter.py +0 -0
  70. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/plotwindow.py +0 -0
  71. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/psection.py +0 -0
  72. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/psegment.py +0 -0
  73. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/rngsettings.py +0 -0
  74. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/simulation/__init__.py +0 -0
  75. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/simulation/neuron_globals.py +0 -0
  76. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/simulation/parallel.py +0 -0
  77. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/simulation/report.py +0 -0
  78. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/simulation/simulation.py +0 -0
  79. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/stimulus/__init__.py +0 -0
  80. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/stimulus/circuit_stimulus_definitions.py +0 -0
  81. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/stimulus/factory.py +0 -0
  82. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/stimulus/stimulus.py +0 -0
  83. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/synapse/__init__.py +0 -0
  84. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/synapse/synapse_factory.py +0 -0
  85. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/synapse/synapse_types.py +0 -0
  86. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/tools.py +0 -0
  87. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/type_aliases.py +0 -0
  88. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/utils.py +0 -0
  89. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/verbosity.py +0 -0
  90. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab.egg-info/SOURCES.txt +0 -0
  91. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab.egg-info/dependency_links.txt +0 -0
  92. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab.egg-info/requires.txt +0 -0
  93. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab.egg-info/top_level.txt +0 -0
  94. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/docs/Makefile +0 -0
  95. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/docs/images/voltage-readme.png +0 -0
  96. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/docs/make.bat +0 -0
  97. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/docs/requirements_docs.txt +0 -0
  98. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/docs/source/_static/.gitkeep +0 -0
  99. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/docs/source/api.rst +0 -0
  100. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/docs/source/changelog.rst +0 -0
  101. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/docs/source/compiling-mechanisms.rst +0 -0
  102. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/docs/source/conf.py +0 -0
  103. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/docs/source/contributing.rst +0 -0
  104. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/docs/source/index.rst +0 -0
  105. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/docs/source/list_of_stim.rst +0 -0
  106. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/docs/source/logo/BlueCelluLabBanner.jpg +0 -0
  107. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/pyproject.toml +0 -0
  108. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/setup.cfg +0 -0
  109. {bluecellulab-2.6.56 → bluecellulab-2.6.57}/tox.ini +0 -0
{bluecellulab-2.6.56 → bluecellulab-2.6.57}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: bluecellulab
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- Version: 2.6.56
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+ Version: 2.6.57
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  Summary: Biologically detailed neural network simulations and analysis.
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  Author: Blue Brain Project, EPFL
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  License: Apache2.0
{bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab/validation/validation.py RENAMED
@@ -291,15 +291,17 @@ def hyperpolarization_test(template_params, rheobase, out_dir):
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  "stim_end": [IDRestTimings.PRE_DELAY.value + IDRestTimings.DURATION.value],
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  }
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  features_results = efel.get_feature_values([trace], ["voltage_base", "steady_state_voltage_stimend"])
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- rmp = features_results[0]["voltage_base"][0]
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- ss_voltage = features_results[0]["steady_state_voltage_stimend"][0]
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- if rmp is None or ss_voltage is None:
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+ rmp = features_results[0]["voltage_base"]
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+ ss_voltage = features_results[0]["steady_state_voltage_stimend"]
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+ if rmp is None or len(rmp) == 0 or ss_voltage is None or len(ss_voltage) == 0:
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  return {
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  "name": name,
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  "passed": False,
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  "validation_details": "Validation failed: Could not determine RMP or steady state voltage.",
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  "figures": [outpath],
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  }
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+ rmp = rmp[0]
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+ ss_voltage = ss_voltage[0]
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  hyperpol_bool = bool(ss_voltage < rmp)
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  notes = (
{bluecellulab-2.6.56 → bluecellulab-2.6.57}/bluecellulab.egg-info/PKG-INFO RENAMED
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  Metadata-Version: 2.4
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  Name: bluecellulab
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- Version: 2.6.56
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+ Version: 2.6.57
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  Summary: Biologically detailed neural network simulations and analysis.
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  Author: Blue Brain Project, EPFL
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  License: Apache2.0
{bluecellulab-2.6.56 → bluecellulab-2.6.57}/.gitignore RENAMED
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{bluecellulab-2.6.56 → bluecellulab-2.6.57}/AUTHORS.txt RENAMED
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{bluecellulab-2.6.56 → bluecellulab-2.6.57}/LICENSE RENAMED
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{bluecellulab-2.6.56 → bluecellulab-2.6.57}/MANIFEST.in RENAMED
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{bluecellulab-2.6.56 → bluecellulab-2.6.57}/Makefile RENAMED
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{bluecellulab-2.6.56 → bluecellulab-2.6.57}/README.rst RENAMED
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{bluecellulab-2.6.56 → bluecellulab-2.6.57}/setup.cfg RENAMED
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{bluecellulab-2.6.56 → bluecellulab-2.6.57}/tox.ini RENAMED
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