bluecellulab 2.6.55__tar.gz → 2.6.57__tar.gz

{bluecellulab-2.6.55 → bluecellulab-2.6.57}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: bluecellulab
-Version: 2.6.55
+Version: 2.6.57
 Summary: Biologically detailed neural network simulations and analysis.
 Author: Blue Brain Project, EPFL
 License: Apache2.0

{bluecellulab-2.6.55 → bluecellulab-2.6.57}/bluecellulab/analysis/inject_sequence.py

@@ -11,6 +11,7 @@ from bluecellulab.simulation.parallel import IsolatedProcess
 from bluecellulab.simulation.simulation import Simulation
 from bluecellulab.stimulus.circuit_stimulus_definitions import Hyperpolarizing
 from bluecellulab.stimulus.factory import Stimulus, StimulusFactory
+from bluecellulab.tools import template_accepts_cvode
 from bluecellulab.tools import validate_section_and_segment
 
 
@@ -112,6 +113,9 @@ def run_multirecordings_stimulus(
     current_vector = neuron.h.Vector()
     current_vector.record(iclamp._ref_i)
 
+    if cvode:
+        cvode = template_accepts_cvode(template_params.template_filepath)
+
     simulation = Simulation(cell)
     simulation.run(stimulus.stimulus_time, cvode=cvode)
 

{bluecellulab-2.6.55 → bluecellulab-2.6.57}/bluecellulab/validation/validation.py

@@ -291,15 +291,17 @@ def hyperpolarization_test(template_params, rheobase, out_dir):
         "stim_end": [IDRestTimings.PRE_DELAY.value + IDRestTimings.DURATION.value],
     }
     features_results = efel.get_feature_values([trace], ["voltage_base", "steady_state_voltage_stimend"])
-    rmp = features_results[0]["voltage_base"][0]
-    ss_voltage = features_results[0]["steady_state_voltage_stimend"][0]
-    if rmp is None or ss_voltage is None:
+    rmp = features_results[0]["voltage_base"]
+    ss_voltage = features_results[0]["steady_state_voltage_stimend"]
+    if rmp is None or len(rmp) == 0 or ss_voltage is None or len(ss_voltage) == 0:
         return {
             "name": name,
             "passed": False,
             "validation_details": "Validation failed: Could not determine RMP or steady state voltage.",
             "figures": [outpath],
         }
+    rmp = rmp[0]
+    ss_voltage = ss_voltage[0]
     hyperpol_bool = bool(ss_voltage < rmp)
 
     notes = (

{bluecellulab-2.6.55 → bluecellulab-2.6.57}/bluecellulab.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: bluecellulab
-Version: 2.6.55
+Version: 2.6.57
 Summary: Biologically detailed neural network simulations and analysis.
 Author: Blue Brain Project, EPFL
 License: Apache2.0