bluecellulab 2.6.48__tar.gz → 2.6.49__tar.gz
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- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/PKG-INFO +1 -1
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/validation/validation.py +8 -5
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab.egg-info/PKG-INFO +1 -1
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/.compile_mod.sh +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/.gitattributes +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/.github/dependabot.yml +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/.github/workflows/release.yml +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/.github/workflows/test.yml +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/.gitignore +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/.gitlab-ci.yml +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/.readthedocs.yml +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/.zenodo.json +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/AUTHORS.txt +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/CHANGELOG.rst +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/CITATION.cff +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/CONTRIBUTING.rst +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/LICENSE +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/MANIFEST.in +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/Makefile +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/README.rst +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/__init__.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/analysis/__init__.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/analysis/analysis.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/analysis/inject_sequence.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/analysis/plotting.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/cell/__init__.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/cell/ballstick/__init__.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/cell/ballstick/emodel.hoc +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/cell/ballstick/morphology.asc +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/cell/cell_dict.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/cell/core.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/cell/injector.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/cell/plotting.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/cell/random.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/cell/recording.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/cell/section_distance.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/cell/serialized_sections.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/cell/sonata_proxy.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/cell/stimuli_generator.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/cell/template.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/circuit/__init__.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/circuit/circuit_access/__init__.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/circuit/circuit_access/bluepy_circuit_access.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/circuit/circuit_access/definition.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/circuit/circuit_access/sonata_circuit_access.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/circuit/config/__init__.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/circuit/config/bluepy_simulation_config.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/circuit/config/definition.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/circuit/config/sections.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/circuit/config/sonata_simulation_config.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/circuit/format.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/circuit/iotools.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/circuit/node_id.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/circuit/simulation_access.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/circuit/synapse_properties.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/circuit/validate.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/circuit_simulation.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/connection.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/dendrogram.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/exceptions.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/graph.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/hoc/Cell.hoc +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/hoc/RNGSettings.hoc +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/hoc/TDistFunc.hoc +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/hoc/TStim.hoc +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/hoc/fileUtils.hoc +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/importer.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/neuron_interpreter.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/plotwindow.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/psection.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/psegment.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/rngsettings.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/simulation/__init__.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/simulation/neuron_globals.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/simulation/parallel.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/simulation/simulation.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/stimulus/__init__.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/stimulus/circuit_stimulus_definitions.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/stimulus/factory.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/stimulus/stimulus.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/synapse/__init__.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/synapse/synapse_factory.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/synapse/synapse_types.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/tools.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/type_aliases.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/utils.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab/verbosity.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab.egg-info/SOURCES.txt +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab.egg-info/dependency_links.txt +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab.egg-info/requires.txt +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/bluecellulab.egg-info/top_level.txt +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/docs/Makefile +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/docs/images/voltage-readme.png +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/docs/make.bat +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/docs/requirements_docs.txt +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/docs/source/_static/.gitkeep +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/docs/source/api.rst +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/docs/source/changelog.rst +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/docs/source/compiling-mechanisms.rst +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/docs/source/conf.py +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/docs/source/contributing.rst +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/docs/source/index.rst +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/docs/source/list_of_stim.rst +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/docs/source/logo/BlueCelluLabBanner.jpg +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/pyproject.toml +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/setup.cfg +0 -0
- {bluecellulab-2.6.48 → bluecellulab-2.6.49}/tox.ini +0 -0
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def run_validations(
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def run_validations(
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cell, cell_name, spike_threshold_voltage=-30, output_dir="./memodel_validation_figures"
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):
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"""Run all the validations on the cell.
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Args:
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cell (Cell): The cell to validate.
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cell_name (str): The name of the cell, used in the output directory.
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spike_threshold_voltage (float): The voltage threshold for spike detection.
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output_dir (str): The directory to save the validation figures.
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"""
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out_dir = pathlib.Path(
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out_dir = pathlib.Path(output_dir) / cell_name
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out_dir.mkdir(parents=True, exist_ok=True)
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# cell = Cell.from_template_parameters(template_params)
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return {
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"memodel_properties": {
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"holding_current": holding_current,
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"rheobase": rheobase,
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"rin": rin,
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"holding_current": float(holding_current),
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"rheobase": float(rheobase),
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"rin": float(rin),
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},
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"spiking_test": spiking_test_result,
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"depolarization_block_test": depolarization_block_result,
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