bluecellulab 2.6.32__tar.gz → 2.6.33__tar.gz

{bluecellulab-2.6.32 → bluecellulab-2.6.33}/LICENSE

@@ -1,10 +1,3 @@
-BlueCellulab is licensed under the Apache License, unless noted otherwise, 
-e.g., for external dependencies such as MOD or morphology files.
-For MOD files for which the original source is available on ModelDB, 
-any specific licenses on mentioned on ModelDB, or the generic License of ModelDB apply.
-The licenses of the morphology files used in this repository are available on: https://zenodo.org/record/5909613
-
-
                                  Apache License
                            Version 2.0, January 2004
                         http://www.apache.org/licenses/

{bluecellulab-2.6.32 → bluecellulab-2.6.33}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bluecellulab
-Version: 2.6.32
+Version: 2.6.33
 Summary: Biologically detailed neural network simulations and analysis.
 Author: Blue Brain Project, EPFL
 License: Apache2.0
@@ -46,9 +46,10 @@ BlueCelluLab
 +----------------+------------+
 | Gitter         | |gitter|   |
 +----------------+------------+
-| Citation       | |zenodo|   |
+| Paper          | |joss|     |
++----------------+------------+
+| Zenodo         | |zenodo|   |
 +----------------+------------+
-
 
 The Blue Brain Cellular Laboratory is designed for simulations and experiments on individual cells or groups of cells.
 Suitable use cases for BlueCelluLab include:
@@ -68,20 +69,25 @@ Suitable use cases for BlueCelluLab include:
 Citation
 ========
 
-When you use this BlueCelluLab software for your research, we ask you to cite the following reference(this includes poster presentations):
+When using the BlueCelluLab software for your research, please cite the following paper (including for poster presentations): `BlueCelluLab: Biologically Detailed Neural Network Experimentation API <https://doi.org/10.21105/joss.07026>`_
 
 .. code-block::
 
-    @software{bluecellulab_zenodo,
-      author       = {Tuncel, Anil and Van Geit, Werner and Gevaert, Mike and Torben-Nielsen, Benjamin and Mandge, Darshan and Kilic, Ilkan and Jaquier, Aurélien and Muller, Eilif and Kanari, Lida and Markram, Henry},
-      title        = {BlueCelluLab},
-      month        = jul,
-      year         = 2023,
-      publisher    = {Zenodo},
-      doi          = {10.5281/zenodo.8113483},
-      url          = {https://doi.org/10.5281/zenodo.8113483}
+    @article{Tuncel2024,
+        doi = {10.21105/joss.07026},
+        url = {https://doi.org/10.21105/joss.07026},
+        year = {2024},
+        publisher = {The Open Journal},
+        volume = {9},
+        number = {100},
+        pages = {7026},
+        author = {Anıl Tuncel and Werner Van Geit and Mike Gevaert and Benjamin Torben-Nielsen and Darshan Mandge and İlkan Kılıç and Aurélien Jaquier and Eilif Muller and Lida Kanari and Henry Markram},
+        title = {BlueCelluLab: Biologically Detailed Neural Network Experimentation API},
+        journal = {Journal of Open Source Software}
     }
 
+If you need to cite a specific version, please use the DOI provided by `Zenodo <https://zenodo.org/records/8113483>`_, which you can access via the "Cite this repository" button at the top of the repository page.
+
 Support
 =======
 
@@ -191,6 +197,10 @@ The licenses of the morphology files used in this repository are available on: h
                  :target: https://gitter.im/BlueBrain/BlueCelluLab
                  :alt: Join the chat at https://gitter.im/BlueBrain/BlueCelluLab
 
+.. |joss| image:: https://joss.theoj.org/papers/effd553ca48734a2966d9d7ace3b05ff/status.svg
+                :target: https://joss.theoj.org/papers/effd553ca48734a2966d9d7ace3b05ff
+                :alt: JOSS
+
 .. |zenodo| image:: https://zenodo.org/badge/640805129.svg
                  :target: https://zenodo.org/badge/latestdoi/640805129
 

{bluecellulab-2.6.32 → bluecellulab-2.6.33}/README.rst

@@ -16,9 +16,10 @@ BlueCelluLab
 +----------------+------------+
 | Gitter         | |gitter|   |
 +----------------+------------+
-| Citation       | |zenodo|   |
+| Paper          | |joss|     |
++----------------+------------+
+| Zenodo         | |zenodo|   |
 +----------------+------------+
-
 
 The Blue Brain Cellular Laboratory is designed for simulations and experiments on individual cells or groups of cells.
 Suitable use cases for BlueCelluLab include:
@@ -38,20 +39,25 @@ Suitable use cases for BlueCelluLab include:
 Citation
 ========
 
-When you use this BlueCelluLab software for your research, we ask you to cite the following reference(this includes poster presentations):
+When using the BlueCelluLab software for your research, please cite the following paper (including for poster presentations): `BlueCelluLab: Biologically Detailed Neural Network Experimentation API <https://doi.org/10.21105/joss.07026>`_
 
 .. code-block::
 
-    @software{bluecellulab_zenodo,
-      author       = {Tuncel, Anil and Van Geit, Werner and Gevaert, Mike and Torben-Nielsen, Benjamin and Mandge, Darshan and Kilic, Ilkan and Jaquier, Aurélien and Muller, Eilif and Kanari, Lida and Markram, Henry},
-      title        = {BlueCelluLab},
-      month        = jul,
-      year         = 2023,
-      publisher    = {Zenodo},
-      doi          = {10.5281/zenodo.8113483},
-      url          = {https://doi.org/10.5281/zenodo.8113483}
+    @article{Tuncel2024,
+        doi = {10.21105/joss.07026},
+        url = {https://doi.org/10.21105/joss.07026},
+        year = {2024},
+        publisher = {The Open Journal},
+        volume = {9},
+        number = {100},
+        pages = {7026},
+        author = {Anıl Tuncel and Werner Van Geit and Mike Gevaert and Benjamin Torben-Nielsen and Darshan Mandge and İlkan Kılıç and Aurélien Jaquier and Eilif Muller and Lida Kanari and Henry Markram},
+        title = {BlueCelluLab: Biologically Detailed Neural Network Experimentation API},
+        journal = {Journal of Open Source Software}
     }
 
+If you need to cite a specific version, please use the DOI provided by `Zenodo <https://zenodo.org/records/8113483>`_, which you can access via the "Cite this repository" button at the top of the repository page.
+
 Support
 =======
 
@@ -161,6 +167,10 @@ The licenses of the morphology files used in this repository are available on: h
                  :target: https://gitter.im/BlueBrain/BlueCelluLab
                  :alt: Join the chat at https://gitter.im/BlueBrain/BlueCelluLab
 
+.. |joss| image:: https://joss.theoj.org/papers/effd553ca48734a2966d9d7ace3b05ff/status.svg
+                :target: https://joss.theoj.org/papers/effd553ca48734a2966d9d7ace3b05ff
+                :alt: JOSS
+
 .. |zenodo| image:: https://zenodo.org/badge/640805129.svg
                  :target: https://zenodo.org/badge/latestdoi/640805129
 

{bluecellulab-2.6.32 → bluecellulab-2.6.33}/bluecellulab.egg-info/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: bluecellulab
-Version: 2.6.32
+Version: 2.6.33
 Summary: Biologically detailed neural network simulations and analysis.
 Author: Blue Brain Project, EPFL
 License: Apache2.0
@@ -46,9 +46,10 @@ BlueCelluLab
 +----------------+------------+
 | Gitter         | |gitter|   |
 +----------------+------------+
-| Citation       | |zenodo|   |
+| Paper          | |joss|     |
++----------------+------------+
+| Zenodo         | |zenodo|   |
 +----------------+------------+
-
 
 The Blue Brain Cellular Laboratory is designed for simulations and experiments on individual cells or groups of cells.
 Suitable use cases for BlueCelluLab include:
@@ -68,20 +69,25 @@ Suitable use cases for BlueCelluLab include:
 Citation
 ========
 
-When you use this BlueCelluLab software for your research, we ask you to cite the following reference(this includes poster presentations):
+When using the BlueCelluLab software for your research, please cite the following paper (including for poster presentations): `BlueCelluLab: Biologically Detailed Neural Network Experimentation API <https://doi.org/10.21105/joss.07026>`_
 
 .. code-block::
 
-    @software{bluecellulab_zenodo,
-      author       = {Tuncel, Anil and Van Geit, Werner and Gevaert, Mike and Torben-Nielsen, Benjamin and Mandge, Darshan and Kilic, Ilkan and Jaquier, Aurélien and Muller, Eilif and Kanari, Lida and Markram, Henry},
-      title        = {BlueCelluLab},
-      month        = jul,
-      year         = 2023,
-      publisher    = {Zenodo},
-      doi          = {10.5281/zenodo.8113483},
-      url          = {https://doi.org/10.5281/zenodo.8113483}
+    @article{Tuncel2024,
+        doi = {10.21105/joss.07026},
+        url = {https://doi.org/10.21105/joss.07026},
+        year = {2024},
+        publisher = {The Open Journal},
+        volume = {9},
+        number = {100},
+        pages = {7026},
+        author = {Anıl Tuncel and Werner Van Geit and Mike Gevaert and Benjamin Torben-Nielsen and Darshan Mandge and İlkan Kılıç and Aurélien Jaquier and Eilif Muller and Lida Kanari and Henry Markram},
+        title = {BlueCelluLab: Biologically Detailed Neural Network Experimentation API},
+        journal = {Journal of Open Source Software}
     }
 
+If you need to cite a specific version, please use the DOI provided by `Zenodo <https://zenodo.org/records/8113483>`_, which you can access via the "Cite this repository" button at the top of the repository page.
+
 Support
 =======
 
@@ -191,6 +197,10 @@ The licenses of the morphology files used in this repository are available on: h
                  :target: https://gitter.im/BlueBrain/BlueCelluLab
                  :alt: Join the chat at https://gitter.im/BlueBrain/BlueCelluLab
 
+.. |joss| image:: https://joss.theoj.org/papers/effd553ca48734a2966d9d7ace3b05ff/status.svg
+                :target: https://joss.theoj.org/papers/effd553ca48734a2966d9d7ace3b05ff
+                :alt: JOSS
+
 .. |zenodo| image:: https://zenodo.org/badge/640805129.svg
                  :target: https://zenodo.org/badge/latestdoi/640805129